- Transcript BART1_0-u30923.002
- Transcript IDBART1_0-u30923.002
- Gene IDBART1_0-u30923
Barley RTD
Exon Structure of BART1_0-u30923.002
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr4H | 1 | 594110003 | 594109089 | - |
| chr4H | 2 | 594110196 | 594110116 | - |
| chr4H | 3 | 594111156 | 594111023 | - |
| chr4H | 4 | 594111612 | 594111468 | - |
| chr4H | 5 | 594112446 | 594112174 | - |
| chr4H | 6 | 594112801 | 594112592 | - |
| chr4H | 7 | 594112958 | 594112873 | - |
| chr4H | 8 | 594113869 | 594113771 | - |
| chr4H | 9 | 594115363 | 594115181 | - |
| chr4H | 10 | 594116068 | 594115461 | - |
| chr4H | 11 | 594116642 | 594116575 | - |
| chr4H | 12 | 594116918 | 594116730 | - |
| chr4H | 13 | 594117137 | 594117009 | - |
| chr4H | 14 | 594119514 | 594117220 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 13.086 | 30.7567 | 22.8681 |
| morex | ETI | 25.2107 | 19.2031 | 27.9575 |
| morex | LEA | 15.2557 | 14.2901 | 13.8376 |
| morex | EPI | 10.0948 | 18.2641 | 12.7711 |
| morex | ROO | 16.2375 | 11.6419 | 0.967494 |
| morex | ROO2 | 17.1641 | 14.9946 | 19.3719 |
| morex | NOD | 14.1298 | 22.2062 | 23.5514 |
| morex | RAC | 31.5708 | 29.3735 | 23.987 |
| morex | INF1 | 28.7191 | 27.8225 | 27.1687 |
| morex | INF2 | 23.8322 | 22.4816 | 28.4714 |
| morex | CAR5 | 43.0938 | 39.1473 | 44.0628 |
| morex | CAR15 | 12.0304 | 16.321 | 13.6275 |
| morex | LEM | 28.0384 | 27.2265 | 21.2153 |
| morex | LOD | 28.2526 | 27.0245 | 33.5783 |
| morex | PAL | 22.9852 | 24.9504 | 22.8262 |
| morex | SEN | 20.0406 | 22.3964 | 12.8115 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os03g06950.1 | +1 | 0.0 | 1530 | 934/1534 (61%) | protein|ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed |
| TAIR PP10 | AT3G47910 @ ARAPORT AT3G47910.2 @ TAIR |
+1 | 9e-152 | 509 | 282/633 (45%) | Symbols: | Ubiquitin carboxyl-terminal hydrolase-related protein | chr3:17674737-17681444 REVERSE LENGTH=1607 |
| BRACH PP3 | Bradi1g74000.4.p | +1 | 0.0 | 2019 | 1147/1496 (77%) | pacid=32803973 transcript=Bradi1g74000.4 locus=Bradi1g74000 ID=Bradi1g74000.4.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (5415 bp)
>BART1_0-u30923.002 5415 150831_barley_pseudomolecules CACAACGCTTCGCCCAAATCTCATTCCCCCCCCGATGGGCCGAAAGAAGCGCAGCCCCCC ACCAAACCCTACTCCGCCCCCGCCCCCGCCCGCCGGCGCCCTCGTCCTCCGCCTCGCCGA TGCGCCGGCCCCGGNCTCAACGACCCCGCCGCCCGCGCGCGCCACCACCAGGCCGCCCTC CTCGCCGCGCGCCGCGCCGTCGACCTCGCGCCCGACTCCCTCGAGCTCGCCCACTTCCGC GCCCTGCTCCTCTACGACGCCGCCACCGACAACCGCGCCTACGAGGAGGTCATCGCCGAG TGCGAGCGCGGGCTCAGGATCGACGAGCCATCCGACCCGGAGCCCCACTCGCTCCGGCTC CCCGCCCCCGACCCCGACCAGCTCCGCGCCGAGCTCCGCAACCTCGTCCAGAAGGCCAAT CTCGCATCCATTTCCACCTGGGTCAAGACCCTCGGCGGCTCCGATGACAAGCTCGGCTTC TTCCGCCTGGCCGATGACCCCCTGGAGCTCCAGCTCCTGCCCGCGGCCCCAGCCCCGCGC CGCCCTAACGAGATCAAGAAGGCCACCAAGACCGTCGAGGAGCGCCGCAAGGAGATCGAG GTGCAGGTCGCCGCTCTCAGGCTGCTGGAGCAGCAGCAGCAGCAGCACAATGCCGCCGCG GCTCTCTCCTCCTCACCACCACAGTCACAGCAGGGAGATGAGCCCCCCTCCTCATCATCT CAGTCCACCGCCTCCGGCCATCGCGCTGATCGGAGAAAGGGAGGGTCCAAAAGGGCAACA GTCTCATCGGCATCCGACCAAAGGAATCAGGTGCGTGCGTTCTTGGCCGCTCTCCCTGTT GACCGAAGGCTGGCCTTACTGAAAACTAGCATTTCTGAGCTCAAGTCGTACTACAAAACT CACAAGGACAAAGATGTTGCCGATGCGGCACCTGCGGTGCTTGATGAGGTGGTAGAGTTT GCCACTTCACACGGGTGTTGGGAGTTCTGGTTATGTGGCATCTGTGAGGAGCGCTACCCA GATGTGGCGCATTCATTGCGGGAGCATGTGAGTGCAATACCACGTCAAGTGCAGGCTATG TTGCCACAGGAGATTGATGCTGACTGGGCAGCAATGCTCCTTGGCTCGAGCTGGAGGCCA GTGGATGTTGCTGCGGCGCTCAAAGCGCTTGAGGAAGAGCAAGGGGACAATATCGGCCAA GACAGGGACAAAGATTCAATGTCATCCGATAATTGGAGTATCAAGGACAAGTCGGACACC TCAGAATCCTCAGCCTCGCCACACAATGAGGAGTGTGATGGTTTTGGAGTGGTAATGAGG GAAGGTGCCCGAAAATGGCCGCTGTCTGATGATGATGAAAGAGCGAAGATTTTGGAGAGG ATCCATTCATTGTTCCAAACCCTTGTGAAGCATAAAAACATTTCAGTGAACCATCTGAAC AGGGTGATACAATATGCCATGGACGAACTTAGAGGGATGCCTTCTGCGTCATTGTTGCTT AACCACTCTATTGAAGAGTCGCCACTCTGCATTTGCTTCTTGGAGGCCTCATCACTGAAG AAGGTTCTCAAGTTCTTGCAAGACCTAATGCAGTCCTGTGGACTTAGTAGGTCCTCAGAG AAGGATGGCGAACTAGGTGATAGAGATTGTTTCCCCAAAAATAACACTATCCTTGAGGGT GTTACGCTGGATTCTGGTTCATCATCACTGATCCTTGATGGCCGGGTATTTGGCGGGAAG TCGAAGTCTGGTCCTGAGAATGTTGATACTGATGAATTCCTTTCGTGGCTGTATGCTGGA TCTCCTCCAATAGGAGAGCAGCTATCAGAGTGGAACTGTATGCTTGTTGATAGGACAAGT CAAGGGATGCAGATTCTTGATATGATCGACAAGGAGGCATCTGTCTTGAGAAACTTGTGT GAAATGAAGCATGAACAATTGAGCATTGAGGAGGGTGTGCTTGCTGTGAACAATATTATA CTTGAGGAGCAACGGCTAAGGGACCGTGGGGGGCGGTATTCATATCAAGGGTTCGAGGAT CTCTTGAGGAACCGTCAGGAGGAGTTGTTGGAGACCAGATTTCGCAGCTCTGAGTACGAT GCAATCTCAAACATCTTGAAGGAAGTTCGCGCCTCACACTTTGGTTATGATGAAGGTTTT TCTGGGATGACCTCGCGCCAATGTGACTATGATGGGGCAGTAATAGATGATTGGAGGTTG CATGACTTTATGCACCCAAGCGATTCAGTGGTGCCGTCGATTGTTTTGAGGATGAAGGAA CATGCAACTACGGAGCTTGGCAAGATAGACGCTAGGATTATGCGAAGTGTAGCTCTGATG CAGCAACTGGATCTCAAGCTTGAACCTGCTGCTTTAGTTGATTATCGATCAATTCTTCTC CCCCTCCTGAAATCCTTCTTGCGAAACCATTTGGAAGAGCTCGCGGACAAGGATGCTAGA GAGAGATCTGATGCAGCAAGAGACGCCTTTCTAGCTGAACTTGCTTTAGATGCTGAGAAG AGTGCAAACAAAGGGGTTGATAAAAAACTTACCCATGAGAAATCAAAGGACAAGAAGAGA ATGAAGGATTCTAGGAGATCCAAGGATATCAAGGATTTGAGCTGGAGTGATCAATACATT GTTCGCCAGGACAGTGCAGATGAGGAAACATCAGAGCAAGCTCAGACTCTTGTTGATTGT GATGACTTTGACGGCAAACTTTCACTAAGTGATGAGTACTCAAATGAGCAAGAGGAAGAG CTTAGGCATAGAGTACAACTTGAAGCAGAGGAAAGAAAACTGGAGGAAACATTGGAGTAC CAAAGGCGGATAGAGGAGGAGGCAAAGCAGAAGCATCTTGCCGAACAGTCCAGAAGTACT TCGTCAGCTCCTGATATTGGGACAAATGGTTATTCAACTGATGTAAATTCAAGCGTGCAT CAGGATAACCATCAAAGTGCACCCAATAATGTCTCACCTGCTTATCTTGAAGGGATAAAG TTTGGTGATTTTCGCTTTCCTAAAGTTCCCTCGCGGGAAAAGAATTCTAGTTCCGATTTT TGTGGTGTGGACCTGCCACAAAAGACTGAGAACAATCGCAGGGAGAAACCAAATGGACTG TGCTCTCCTGGAGCACATGCATTAACCAGCAACAATGTGGACTTCACTAAGCCAGCACTG AAAATGAACGGAGTTGGGAAATATGCTCAGAATACAAAACTTGCAACTAATCCTCTCATC CAAAGGTCTAAGAGCAGCACTAGCCAACCACATAAGAAATACATCCAAGGTGCTGTTCAT AATGGTGATGATAGTGCATCTAGTCGACAAAATGGTACAGCAGCTCTAAGATGGAGCAGT TCTGGCAAAGCAGCTGACTATTCTAGTAACAGTTATCAGGATGGAAGACAAAATGAGTTG CCACCTGTGCTTTCTTCGGATGATCCATGGAATGCCAACAAAGCTGAGAAAGCTGACAAG GGGGCAATCTCACCTGCAATTGTATGTATCGAGGATGATTCTGACAAAAGGTTCGAAGAA GACCTCAGAAAAGCAGTGCACCAAAGCCTCGGCACTTCAAATGGGAAAGAAGTGTATGGG GCTGGCCTTAAAAATGCTGCTGGAGAATACAACTGTTTCCTGAATGTGATTATCCAGTCA TTATGGCATTTGAAGCGGTTTCGACACGAGTTCCTTAAAACATCATCACTGCATAAGCAT ATTGAAGATCCTTGTGCTGTCTGTGCATTATATAATATATTCGTTGACTTGAGCAAAGCA TCTGAGGGGCAAGGAGAAGCTGTTGCACCTACTTCTTTGAGGATAGCTTTGAGCAAATCC TATCCTAACAACAGGTTCTTTCAGGAGGGACAAATGAATGATGCATCTGAGGTATTGGGT GTGATCTTTGAGTGCTTGCATAAGTCGTACACTTCTCGGGCTGAGTGCCATGCTAAATCT CACGAGGGCAATTCTATCGGCTCATGGGACTGTGCAAGCGATTTTTGCATTGCACATTGT CTTTTTGGAATGGATGTCTATGAACGGATGAACTGCCACAATTGCGGATTAGAGTCTAGA CGACTTAAGTATACCTCATTCTTCCACAATATCAATGCTAGTTCACTTCGAACTGCAAAG ATGATGTGCCTAGATCCATTTGATGATCTTTTGAAGACTGTGATAATGAATGATCAGCTA GCTTGTGATCCTGACGTTGGCGGTTGCGGAAAACCGAATCATATACACCACATTCTTTCT AGTTCCCCTCATGTTTTTACAGTTGTTTTGGGATGGCAGAACAGCAAAGAGAGTGTTGAT GACATAGCTGCAACCTTGGCTGGTATTTCGACTGAGATAGACATCAGTGTTTTCTACCGT GGTCTAGATCGAGGAAGCAAACATTTTCTTGTGTCAGTGGTTTGTTACTATGGGCAGCAT TATCATTGCTTTGCTTTCGAGGATGAGCACTGGGTCATGTATGATGACCAGACTGTTAAG GTTATTGGTAGCTGGGATGATGTGGTCATTATGTGTGAGAAAGGTCATTTACAACCTCAA GTGCTCTTCTTTGAAGCTGCAAATTAATTTTCTTCAAAGTTCAAGGGTGCTGTGCTGTGC TGTGCTGTGCCGTGGTGTGGTTAACATGTCTTCCGAGATATAGGTTTTCCCGGTGACTGA GAAGGTTAGCGATAGAATACAAAATTCGTTTTGAGCTATGGGGGATAATGGTGGTAATTT CAGCAGTTGCACTTGCCTGTCGGTTTTGTCGAGCCCTGCCTTAAATAAATGGTCGTCCGA GCCTTTACTAAAAGGAGAGAAGTGGTGATATATATATTTTCCTTTTGGACTTTGGATATA GCCTGACCCCATATCCTGTCGAATGCGATTTTGCCGTGGAGGACTGTAGCGGGGATAACT CTACTCGATCATGTGCTGCCCCAGAGAAATTATTCATGAGTGCTGCTGAATTTGCTAGAA GCTTATCAATATATACGGTTTTTTTGTGCTTACGATGTGGAGGAATGTTGTACTGTGTGT GACGAAGGGCGGGGGGTATCAAAGAAAATGGATGCTGTCATTTTTCTTTTTGTTGCAAAT TCCTGGGAGGGGGTTTCTTATCATCTGTAGTGACAAAGTTGTATTATCTCAGAATGTTGT GAAGCCTGTTTTCGCTGGCCATGACGAACACGTAAAGTTATTGCTCCTGGACCTCCTGTC GCTTGTTATCTTGCTGTTTGGTGTTAGTTTTAGTTTATTTTTTTTGTGCAATTAGTATCA GAATTGCCACATGGCTATGCACCCCTTTTGCAGCTATGCTGCACCCCACCAGCAACCTTA CGATTCACTGCAACGAAAACAGCTAGAAACAGTTTTTTTCCTTTTTCACCGTCAGAGTTC ACTATTCATTTCCGT
Protein Sequence (1528 aa)
>BART1_0-u30923.002 1528 150831_barley_pseudomolecules HNASPKSHSPPDGPKEAQPPTKPYSAPAPARRRPRPPPRRCAGPXLNDPAARARHHQAAL LAARRAVDLAPDSLELAHFRALLLYDAATDNRAYEEVIAECERGLRIDEPSDPEPHSLRL PAPDPDQLRAELRNLVQKANLASISTWVKTLGGSDDKLGFFRLADDPLELQLLPAAPAPR RPNEIKKATKTVEERRKEIEVQVAALRLLEQQQQQHNAAAALSSSPPQSQQGDEPPSSSS QSTASGHRADRRKGGSKRATVSSASDQRNQVRAFLAALPVDRRLALLKTSISELKSYYKT HKDKDVADAAPAVLDEVVEFATSHGCWEFWLCGICEERYPDVAHSLREHVSAIPRQVQAM LPQEIDADWAAMLLGSSWRPVDVAAALKALEEEQGDNIGQDRDKDSMSSDNWSIKDKSDT SESSASPHNEECDGFGVVMREGARKWPLSDDDERAKILERIHSLFQTLVKHKNISVNHLN RVIQYAMDELRGMPSASLLLNHSIEESPLCICFLEASSLKKVLKFLQDLMQSCGLSRSSE KDGELGDRDCFPKNNTILEGVTLDSGSSSLILDGRVFGGKSKSGPENVDTDEFLSWLYAG SPPIGEQLSEWNCMLVDRTSQGMQILDMIDKEASVLRNLCEMKHEQLSIEEGVLAVNNII LEEQRLRDRGGRYSYQGFEDLLRNRQEELLETRFRSSEYDAISNILKEVRASHFGYDEGF SGMTSRQCDYDGAVIDDWRLHDFMHPSDSVVPSIVLRMKEHATTELGKIDARIMRSVALM QQLDLKLEPAALVDYRSILLPLLKSFLRNHLEELADKDARERSDAARDAFLAELALDAEK SANKGVDKKLTHEKSKDKKRMKDSRRSKDIKDLSWSDQYIVRQDSADEETSEQAQTLVDC DDFDGKLSLSDEYSNEQEEELRHRVQLEAEERKLEETLEYQRRIEEEAKQKHLAEQSRST SSAPDIGTNGYSTDVNSSVHQDNHQSAPNNVSPAYLEGIKFGDFRFPKVPSREKNSSSDF CGVDLPQKTENNRREKPNGLCSPGAHALTSNNVDFTKPALKMNGVGKYAQNTKLATNPLI QRSKSSTSQPHKKYIQGAVHNGDDSASSRQNGTAALRWSSSGKAADYSSNSYQDGRQNEL PPVLSSDDPWNANKAEKADKGAISPAIVCIEDDSDKRFEEDLRKAVHQSLGTSNGKEVYG AGLKNAAGEYNCFLNVIIQSLWHLKRFRHEFLKTSSLHKHIEDPCAVCALYNIFVDLSKA SEGQGEAVAPTSLRIALSKSYPNNRFFQEGQMNDASEVLGVIFECLHKSYTSRAECHAKS HEGNSIGSWDCASDFCIAHCLFGMDVYERMNCHNCGLESRRLKYTSFFHNINASSLRTAK MMCLDPFDDLLKTVIMNDQLACDPDVGGCGKPNHIHHILSSSPHVFTVVLGWQNSKESVD DIAATLAGISTEIDISVFYRGLDRGSKHFLVSVVCYYGQHYHCFAFEDEHWVMYDDQTVK VIGSWDDVVIMCEKGHLQPQVLFFEAAN