- Transcript BART1_0-u30923.001
- Transcript IDBART1_0-u30923.001
- Gene IDBART1_0-u30923
Barley RTD
Exon Structure of BART1_0-u30923.001
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr4H | 1 | 594110003 | 594109089 | - |
| chr4H | 2 | 594110196 | 594110116 | - |
| chr4H | 3 | 594111156 | 594111023 | - |
| chr4H | 4 | 594111612 | 594111468 | - |
| chr4H | 5 | 594112446 | 594112174 | - |
| chr4H | 6 | 594112801 | 594112592 | - |
| chr4H | 7 | 594112961 | 594112873 | - |
| chr4H | 8 | 594113869 | 594113771 | - |
| chr4H | 9 | 594115363 | 594115181 | - |
| chr4H | 10 | 594116068 | 594115461 | - |
| chr4H | 11 | 594116642 | 594116575 | - |
| chr4H | 12 | 594116918 | 594116730 | - |
| chr4H | 13 | 594117137 | 594117009 | - |
| chr4H | 14 | 594119514 | 594117220 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 0.0288158 | 17.6588 | 15.4453 |
| morex | ETI | 11.9753 | 25.1553 | 22.327 |
| morex | LEA | 12.7111 | 13.6052 | 14.6706 |
| morex | EPI | 0.00080202 | 4.11808 | 0.927798 |
| morex | ROO | 0.000183833 | 13.9248 | 0.0161704 |
| morex | ROO2 | 15.8819 | 18.5061 | 12.0021 |
| morex | NOD | 0.000100242 | 8.45249 | 0.0121529 |
| morex | RAC | 19.6254 | 16.4011 | 24.1974 |
| morex | INF1 | 19.1787 | 30.2548 | 8.21192 |
| morex | INF2 | 28.2959 | 60.3103 | 29.2454 |
| morex | CAR5 | 67.1241 | 43.0212 | 52.8102 |
| morex | CAR15 | 20.7298 | 20.7708 | 20.7877 |
| morex | LEM | 27.8284 | 22.589 | 22.1136 |
| morex | LOD | 28.383 | 25.2585 | 28.7398 |
| morex | PAL | 24.9592 | 28.7159 | 27.2209 |
| morex | SEN | 7.93627 | 14.3809 | 10.4376 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os03g06950.1 | +1 | 0.0 | 1526 | 934/1535 (61%) | protein|ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed |
| TAIR PP10 | AT3G47910 @ ARAPORT AT3G47910.2 @ TAIR |
+1 | 6e-152 | 509 | 282/633 (45%) | Symbols: | Ubiquitin carboxyl-terminal hydrolase-related protein | chr3:17674737-17681444 REVERSE LENGTH=1607 |
| BRACH PP3 | Bradi1g74000.4.p | +1 | 0.0 | 2014 | 1147/1497 (77%) | pacid=32803973 transcript=Bradi1g74000.4 locus=Bradi1g74000 ID=Bradi1g74000.4.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (5418 bp)
>BART1_0-u30923.001 5418 150831_barley_pseudomolecules CACAACGCTTCGCCCAAATCTCATTCCCCCCCCGATGGGCCGAAAGAAGCGCAGCCCCCC ACCAAACCCTACTCCGCCCCCGCCCCCGCCCGCCGGCGCCCTCGTCCTCCGCCTCGCCGA TGCGCCGGCCCCGGNCTCAACGACCCCGCCGCCCGCGCGCGCCACCACCAGGCCGCCCTC CTCGCCGCGCGCCGCGCCGTCGACCTCGCGCCCGACTCCCTCGAGCTCGCCCACTTCCGC GCCCTGCTCCTCTACGACGCCGCCACCGACAACCGCGCCTACGAGGAGGTCATCGCCGAG TGCGAGCGCGGGCTCAGGATCGACGAGCCATCCGACCCGGAGCCCCACTCGCTCCGGCTC CCCGCCCCCGACCCCGACCAGCTCCGCGCCGAGCTCCGCAACCTCGTCCAGAAGGCCAAT CTCGCATCCATTTCCACCTGGGTCAAGACCCTCGGCGGCTCCGATGACAAGCTCGGCTTC TTCCGCCTGGCCGATGACCCCCTGGAGCTCCAGCTCCTGCCCGCGGCCCCAGCCCCGCGC CGCCCTAACGAGATCAAGAAGGCCACCAAGACCGTCGAGGAGCGCCGCAAGGAGATCGAG GTGCAGGTCGCCGCTCTCAGGCTGCTGGAGCAGCAGCAGCAGCAGCACAATGCCGCCGCG GCTCTCTCCTCCTCACCACCACAGTCACAGCAGGGAGATGAGCCCCCCTCCTCATCATCT CAGTCCACCGCCTCCGGCCATCGCGCTGATCGGAGAAAGGGAGGGTCCAAAAGGGCAACA GTCTCATCGGCATCCGACCAAAGGAATCAGGTGCGTGCGTTCTTGGCCGCTCTCCCTGTT GACCGAAGGCTGGCCTTACTGAAAACTAGCATTTCTGAGCTCAAGTCGTACTACAAAACT CACAAGGACAAAGATGTTGCCGATGCGGCACCTGCGGTGCTTGATGAGGTGGTAGAGTTT GCCACTTCACACGGGTGTTGGGAGTTCTGGTTATGTGGCATCTGTGAGGAGCGCTACCCA GATGTGGCGCATTCATTGCGGGAGCATGTGAGTGCAATACCACGTCAAGTGCAGGCTATG TTGCCACAGGAGATTGATGCTGACTGGGCAGCAATGCTCCTTGGCTCGAGCTGGAGGCCA GTGGATGTTGCTGCGGCGCTCAAAGCGCTTGAGGAAGAGCAAGGGGACAATATCGGCCAA GACAGGGACAAAGATTCAATGTCATCCGATAATTGGAGTATCAAGGACAAGTCGGACACC TCAGAATCCTCAGCCTCGCCACACAATGAGGAGTGTGATGGTTTTGGAGTGGTAATGAGG GAAGGTGCCCGAAAATGGCCGCTGTCTGATGATGATGAAAGAGCGAAGATTTTGGAGAGG ATCCATTCATTGTTCCAAACCCTTGTGAAGCATAAAAACATTTCAGTGAACCATCTGAAC AGGGTGATACAATATGCCATGGACGAACTTAGAGGGATGCCTTCTGCGTCATTGTTGCTT AACCACTCTATTGAAGAGTCGCCACTCTGCATTTGCTTCTTGGAGGCCTCATCACTGAAG AAGGTTCTCAAGTTCTTGCAAGACCTAATGCAGTCCTGTGGACTTAGTAGGTCCTCAGAG AAGGATGGCGAACTAGGTGATAGAGATTGTTTCCCCAAAAATAACACTATCCTTGAGGGT GTTACGCTGGATTCTGGTTCATCATCACTGATCCTTGATGGCCGGGTATTTGGCGGGAAG TCGAAGTCTGGTCCTGAGAATGTTGATACTGATGAATTCCTTTCGTGGCTGTATGCTGGA TCTCCTCCAATAGGAGAGCAGCTATCAGAGTGGAACTGTATGCTTGTTGATAGGACAAGT CAAGGGATGCAGATTCTTGATATGATCGACAAGGAGGCATCTGTCTTGAGAAACTTGTGT GAAATGAAGCATGAACAATTGAGCATTGAGGAGGGTGTGCTTGCTGTGAACAATATTATA CTTGAGGAGCAACGGCTAAGGGACCGTGGGGGGCGGTATTCATATCAAGGGTTCGAGGAT CTCTTGAGGAACCGTCAGGAGGAGTTGTTGGAGACCAGATTTCGCAGCTCTGAGTACGAT GCAATCTCAAACATCTTGAAGGAAGTTCGCGCCTCACACTTTGGTTATGATGAAGGTTTT TCTGGGATGACCTCGCGCCAATGTGACTATGATGGGGCAGTAATAGATGATTGGAGGTTG CATGACTTTATGCACCCAAGCGATTCAGTGGTGCCGTCGATTGTTTTGAGGATGAAGGAA CATGCAACTACGGAGCTTGGCAAGATAGACGCTAGGATTATGCGAAGTGTAGCTCTGATG CAGCAACTGGATCTCAAGCTTGAACCTGCTGCTTTAGTTGATTATCGATCAATTCTTCTC CCCCTCCTGAAATCCTTCTTGCGAAACCATTTGGAAGAGCTCGCGGACAAGGATGCTAGA GAGAGATCTGATGCAGCAAGAGACGCCTTTCTAGCTGAACTTGCTTTAGATGCTGAGAAG AGTGCAAACAAAGGGGTTGATAAAAAACTTACCCATGAGAAATCAAAGGACAAGAAGAGA ATGAAGGATTCTAGGAGATCCAAGGATATCAAGGATTTGAGCTGGAGTGATCAATACATT GTTCGCCAGGACAGTGCAGATGAGGAAACATCAGAGCAAGCTCAGACTCTTGTTGATTGT GATGACTTTGACGGCAAACTTTCACTAAGTGATGAGTACTCAAATGAGCAAGAGGAAGAG CTTAGGCATAGAGTACAACTTGAAGCAGAGGAAAGAAAACTGGAGGAAACATTGGAGTAC CAAAGGCGGATAGAGGAGGAGGCAAAGCAGAAGCATCTTGCCGAACAGTCCAGAAGTACT TCGTCAGCTCCTGATATTGGGACAAATGGTTATTCAACTGATGTAAATTCAAGCGTGCAT CAGGATAACCATCAAAGTGCACCCAATAATGTCTCACCTGCTTATCTTGAAGGGATAAAG TTTGGTGATTTTCGCTTTCCTAAAGTTCCCTCGCGGGAAAAGAATTCTAGTTCCGATTTT TGTGGTGTGGACCTGCCACAAAAGACTGAGAACAATCGCAGGGAGAAACCAAATGGACTG TGCTCTCCTGGAGCACATGCATTAACCAGCAACAATGTGGACTTCACTAAGCCAGCACTG AAAATGAACGGAGTTGGGAAATATGCTCAGAATACAAAACTTGCAACTAATCCTCTCATC CAAAGGTCTAAGAGCAGCACTAGCCAACCACATAAGAAATACATCCAAGGTGCTGTTCAT AATGGTGATGATAGTGCATCTAGTCGACAAAATGGTACAGCAGCTCTAAGATGGAGCAGT TCTGGCAAAGCAGCTGACTATTCTAGTAACAGTTATCAGGATGGAAGACAAAATGAGTTG CCACCTGTGCTTTCTTCGGATGATCCATGGAATGCCAACAAAGCTGAGAAAGCTGACAAG GGGGCAATCTCACCTGCAATTGTATGTATCGAGGATGATTCTGACAAAAGGTTCGAAGAA GACCTCAGAAAAGCAGTGCACCAAAGCCTCGCAGGCACTTCAAATGGGAAAGAAGTGTAT GGGGCTGGCCTTAAAAATGCTGCTGGAGAATACAACTGTTTCCTGAATGTGATTATCCAG TCATTATGGCATTTGAAGCGGTTTCGACACGAGTTCCTTAAAACATCATCACTGCATAAG CATATTGAAGATCCTTGTGCTGTCTGTGCATTATATAATATATTCGTTGACTTGAGCAAA GCATCTGAGGGGCAAGGAGAAGCTGTTGCACCTACTTCTTTGAGGATAGCTTTGAGCAAA TCCTATCCTAACAACAGGTTCTTTCAGGAGGGACAAATGAATGATGCATCTGAGGTATTG GGTGTGATCTTTGAGTGCTTGCATAAGTCGTACACTTCTCGGGCTGAGTGCCATGCTAAA TCTCACGAGGGCAATTCTATCGGCTCATGGGACTGTGCAAGCGATTTTTGCATTGCACAT TGTCTTTTTGGAATGGATGTCTATGAACGGATGAACTGCCACAATTGCGGATTAGAGTCT AGACGACTTAAGTATACCTCATTCTTCCACAATATCAATGCTAGTTCACTTCGAACTGCA AAGATGATGTGCCTAGATCCATTTGATGATCTTTTGAAGACTGTGATAATGAATGATCAG CTAGCTTGTGATCCTGACGTTGGCGGTTGCGGAAAACCGAATCATATACACCACATTCTT TCTAGTTCCCCTCATGTTTTTACAGTTGTTTTGGGATGGCAGAACAGCAAAGAGAGTGTT GATGACATAGCTGCAACCTTGGCTGGTATTTCGACTGAGATAGACATCAGTGTTTTCTAC CGTGGTCTAGATCGAGGAAGCAAACATTTTCTTGTGTCAGTGGTTTGTTACTATGGGCAG CATTATCATTGCTTTGCTTTCGAGGATGAGCACTGGGTCATGTATGATGACCAGACTGTT AAGGTTATTGGTAGCTGGGATGATGTGGTCATTATGTGTGAGAAAGGTCATTTACAACCT CAAGTGCTCTTCTTTGAAGCTGCAAATTAATTTTCTTCAAAGTTCAAGGGTGCTGTGCTG TGCTGTGCTGTGCCGTGGTGTGGTTAACATGTCTTCCGAGATATAGGTTTTCCCGGTGAC TGAGAAGGTTAGCGATAGAATACAAAATTCGTTTTGAGCTATGGGGGATAATGGTGGTAA TTTCAGCAGTTGCACTTGCCTGTCGGTTTTGTCGAGCCCTGCCTTAAATAAATGGTCGTC CGAGCCTTTACTAAAAGGAGAGAAGTGGTGATATATATATTTTCCTTTTGGACTTTGGAT ATAGCCTGACCCCATATCCTGTCGAATGCGATTTTGCCGTGGAGGACTGTAGCGGGGATA ACTCTACTCGATCATGTGCTGCCCCAGAGAAATTATTCATGAGTGCTGCTGAATTTGCTA GAAGCTTATCAATATATACGGTTTTTTTGTGCTTACGATGTGGAGGAATGTTGTACTGTG TGTGACGAAGGGCGGGGGGTATCAAAGAAAATGGATGCTGTCATTTTTCTTTTTGTTGCA AATTCCTGGGAGGGGGTTTCTTATCATCTGTAGTGACAAAGTTGTATTATCTCAGAATGT TGTGAAGCCTGTTTTCGCTGGCCATGACGAACACGTAAAGTTATTGCTCCTGGACCTCCT GTCGCTTGTTATCTTGCTGTTTGGTGTTAGTTTTAGTTTATTTTTTTTGTGCAATTAGTA TCAGAATTGCCACATGGCTATGCACCCCTTTTGCAGCTATGCTGCACCCCACCAGCAACC TTACGATTCACTGCAACGAAAACAGCTAGAAACAGTTTTTTTCCTTTTTCACCGTCAGAG TTCACTATTCATTTCCGT
Protein Sequence (1529 aa)
>BART1_0-u30923.001 1529 150831_barley_pseudomolecules HNASPKSHSPPDGPKEAQPPTKPYSAPAPARRRPRPPPRRCAGPXLNDPAARARHHQAAL LAARRAVDLAPDSLELAHFRALLLYDAATDNRAYEEVIAECERGLRIDEPSDPEPHSLRL PAPDPDQLRAELRNLVQKANLASISTWVKTLGGSDDKLGFFRLADDPLELQLLPAAPAPR RPNEIKKATKTVEERRKEIEVQVAALRLLEQQQQQHNAAAALSSSPPQSQQGDEPPSSSS QSTASGHRADRRKGGSKRATVSSASDQRNQVRAFLAALPVDRRLALLKTSISELKSYYKT HKDKDVADAAPAVLDEVVEFATSHGCWEFWLCGICEERYPDVAHSLREHVSAIPRQVQAM LPQEIDADWAAMLLGSSWRPVDVAAALKALEEEQGDNIGQDRDKDSMSSDNWSIKDKSDT SESSASPHNEECDGFGVVMREGARKWPLSDDDERAKILERIHSLFQTLVKHKNISVNHLN RVIQYAMDELRGMPSASLLLNHSIEESPLCICFLEASSLKKVLKFLQDLMQSCGLSRSSE KDGELGDRDCFPKNNTILEGVTLDSGSSSLILDGRVFGGKSKSGPENVDTDEFLSWLYAG SPPIGEQLSEWNCMLVDRTSQGMQILDMIDKEASVLRNLCEMKHEQLSIEEGVLAVNNII LEEQRLRDRGGRYSYQGFEDLLRNRQEELLETRFRSSEYDAISNILKEVRASHFGYDEGF SGMTSRQCDYDGAVIDDWRLHDFMHPSDSVVPSIVLRMKEHATTELGKIDARIMRSVALM QQLDLKLEPAALVDYRSILLPLLKSFLRNHLEELADKDARERSDAARDAFLAELALDAEK SANKGVDKKLTHEKSKDKKRMKDSRRSKDIKDLSWSDQYIVRQDSADEETSEQAQTLVDC DDFDGKLSLSDEYSNEQEEELRHRVQLEAEERKLEETLEYQRRIEEEAKQKHLAEQSRST SSAPDIGTNGYSTDVNSSVHQDNHQSAPNNVSPAYLEGIKFGDFRFPKVPSREKNSSSDF CGVDLPQKTENNRREKPNGLCSPGAHALTSNNVDFTKPALKMNGVGKYAQNTKLATNPLI QRSKSSTSQPHKKYIQGAVHNGDDSASSRQNGTAALRWSSSGKAADYSSNSYQDGRQNEL PPVLSSDDPWNANKAEKADKGAISPAIVCIEDDSDKRFEEDLRKAVHQSLAGTSNGKEVY GAGLKNAAGEYNCFLNVIIQSLWHLKRFRHEFLKTSSLHKHIEDPCAVCALYNIFVDLSK ASEGQGEAVAPTSLRIALSKSYPNNRFFQEGQMNDASEVLGVIFECLHKSYTSRAECHAK SHEGNSIGSWDCASDFCIAHCLFGMDVYERMNCHNCGLESRRLKYTSFFHNINASSLRTA KMMCLDPFDDLLKTVIMNDQLACDPDVGGCGKPNHIHHILSSSPHVFTVVLGWQNSKESV DDIAATLAGISTEIDISVFYRGLDRGSKHFLVSVVCYYGQHYHCFAFEDEHWVMYDDQTV KVIGSWDDVVIMCEKGHLQPQVLFFEAAN