- Transcript BART1_0-u30899.016
- Transcript IDBART1_0-u30899.016
- Gene IDBART1_0-u30899
Barley RTD
Exon Structure of BART1_0-u30899.016
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr4H | 1 | 593062202 | 593062092 | + |
| chr4H | 2 | 593068884 | 593065576 | + |
| chr4H | 3 | 593069988 | 593069493 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 5.2207 | 2.48244 | 3.21325 |
| morex | ETI | 1.1229 | 0.501371 | 0 |
| morex | LEA | 0.0000000052812 | 0.000000346758 | 2.07831 |
| morex | EPI | 0.39571 | 1.62616 | 1.99457 |
| morex | ROO | 3.20616 | 4.5182 | 1.74803 |
| morex | ROO2 | 4.79705 | 1.26098 | 0.000016003 |
| morex | NOD | 0.000000238996 | 3.42147 | 1.76041 |
| morex | RAC | 2.14224 | 3.86684 | 3.22109 |
| morex | INF1 | 10.5741 | 14.1024 | 13.9969 |
| morex | INF2 | 9.20578 | 4.74288 | 6.84983 |
| morex | CAR5 | 2.32348 | 5.5184 | 3.11702 |
| morex | CAR15 | 3.81847 | 2.13246 | 5.5297 |
| morex | LEM | 2.12265 | 1.04261 | 0.750836 |
| morex | LOD | 1.25813 | 1.31442 | 2.9862 |
| morex | PAL | 0.73867 | 1.34148 | 2.414 |
| morex | SEN | 1.00135 | 3.16652 | 0.687738 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os11g38900.1 | +1 | 0.0 | 1229 | 648/853 (76%) | protein|histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH1, putative, expressed |
| TAIR PP10 | AT1G73100 @ ARAPORT AT1G73100.1 @ TAIR |
+1 | 0.0 | 556 | 272/511 (53%) | Symbols: SUVH3, SDG19 | SU(VAR)3-9 homolog 3 | chr1:27491970-27493979 FORWARD LENGTH=669 |
| BRACH PP3 | Bradi1g53840.1.p | +1 | 0.0 | 1292 | 687/855 (80%) | pacid=32801893 transcript=Bradi1g53840.1 locus=Bradi1g53840 ID=Bradi1g53840.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (3916 bp)
>BART1_0-u30899.016 3916 150831_barley_pseudomolecules GCGGCGCGGCGGCGCGATTCCTTTGCTGCTCGGCGGCAGCGGCCGACGGAAGCAGCGGCC GGGGTAGCAGCGACGGCAAGGCTCGGTTCTCTCCTCTCCCTCCCAACCAAGGAAGTTATT GTCTAATCTTAGTTCCGTTGTCGTACATATTCAAACAGCAAACAACAAACAACAAACATC TTCCCGATTCCTACTAATAGGTCCTTTTTGCTTAACTCATTCTCTGTGATATGCTCCTTA AAGTTGGCTTAGCTCTGAGCCATTTATAGCCTAAAAAACGGTTGAACTGTTTGTGGATAA AACTTTCAATAGTAAGTATTACTCTATCTGAATCCAGAGAACTGTTGTTTTTGATTTTTC ATGCTGTCTAATACACAAGCTTTAAGATACTTTGCTGCCATAGCTTATAAATTAGAAAAG AAAATAATGCCATGGAAGCATTGTGTCGAATACGAATGCCATTTTCGCATGGGCAATTTC AATACTAAAAAAATAACAATGTTTACAGTTTGATTGATGGCACAGTTACCAAGCAAAATT TAATTGATACATTATCTTTGTTTATTTTTCATGATTATGCTATTAATGTTGCATGTCTTC TGTGTAGTAATCAGTGAACTGTGATTTGATGAATAATCAGACTTAAAAAAAAATCTAGAT CTGCTGGTAATACTTCACTATCTGCATTAAACAAATAACAGTTTAAGTTATTTATGAATT CTACACTCAATGCACTGAAGAATTTTTCTTTTCAGCTTTCTCCGAAGTATGGCTTGTGGA CAAGTGTAGACCTGTAGACAAAGAGACAAAGAAATTGCTGACATAAGTCCTTATTTGAGA AAGATCAGTTGTCAGCTTACAATGGCTGGAAATCAGCAGCCGGCTTCAGTTGTGTTGGAT TATGCAGCAGTCCTCGACGCCAAACCCTTGCGCACACTGACCCCCATGTTCCCTGCACCG CTAGGGATGCACACTTTCACCCCTAAAAGCTCATCTTCAGTTGTCTGTGTCACCCCGTTT GGACCATATGCTGGAGGTACCGAACTGGGAATGCCTGGTGGTGTTCCGCCAATGTTAACA TCACCGTCCGCTTCTGCAGATCCCAAGCAGGTGCAGCCATATACGGTTCATATGAATGGA ACTTCTAATGCTAATGGTACTACAAGCAACACAATGGTTACCCCTGTGTTGCAAACTCCT CCAGCAGTCACTACACAGGAGTCTGGTAAGAAGAAGAGGGGGATGGTTACCCCTGTGTTG CAAACTCCTCCAACAGTTACTACACAGGAGTCTGGTAAGAAGAAGAGGGGGAGGCCCAGG CGTGTGCAAGATACAACTACTGTTCCCCCGGTTCCTCCAGTTCAACCGGTTCCTACAGTT CATTCAGTTCCTTCAGCTCCTCCAGAAGTTAATAATATTGTTCTCCAGACACCTACTTCA GCCGTCTCACAGGAATCTGGTAAGAGGAAGAGGGGACGACCCAAGCGTGTGCCAGATGTT TCTGTCTTATCAACTCCAGTGCCTGTAGCAGATGGTACGCCTATTTTACAGACACCTCCT GCATCTAGTGTACATGAATCTGTTACAAAGAAAAGGGGGCGGCGATCCAAGCTTGTGCAG GATATTTCAGATACTTCAACTCCCCCAGTTCATTCAAAAGAGAGTGAGCCCTTTATGCAG ACTCCTGCAGTCACCGTATTGGAGGATGGTAAGAGGAAGAGAGGGCGGCCGAAGCGTGTG CCTGATAGTTCAGTGACTCCTTCAAGTCATTCTGTCCTTACAGTAGATGTTGACAGTGGT GACACATCAAAACGTGGCCGGCCTAGAAAAATTGACACAAGCCTATTGCACCTGCCATCT TTGTTTTCAGACGATCCCAGGGAATCCACAGATAATATACTTATGATGTTTGATGCACTG CGACGGCGGCTCATGCAGCTGGATGAGGTGAAGCAAGTAGCAAAACAGCAGCAAAACTTG AAGGCTGGGAGTATCATGATGAGCGCTGAACTTCGCCTCAGTAAGAACAAGAGGATTGGA GAGGTTCCAGGTGTTGAGGTTGGTGACATGTTCTACTTCAGAATTGAGATGTGCCTGGTA GGGTTAAATAGTCAGAGCATGGCAGGGATAGATTATATGTCTGCTAAGTTTGGTAACGAG GAGGACCCCGTGGCCATTAGTATTGTGTCAGCTGGTGTGTATGAGGATGCTGAAGATAAT GATCCAGATGTTCTGGTTTACAGTGGACATGGCATGTCTGGTAAGGATGACCAAAAGCTT GAGAGAGGTAATCTTGCACTGGAGAGAAGTTTGCATAGGGGTAATCCCATTAGAGTCGTT CGCACTGTGAAAGACTTGACTTGTTCAACTGGTAAGATATACATATATGATGGCCTTTAC AGGATCAGAGAAGCCTGGGTAGAGAAAGGTAAATCTGGTTTCAATATGTTTAAACACAAG TTGCTCAGAGAACCTGGACAACCTGATGGCATTGCAGTGTGGAAGAAGACTGAAAAATGG AGGGAAAATCCATCCTCTAGAGATCGTGTTATAGTGCACGACATATCATACGGTGTGGAA AGTAAGCCTATCTGCCTTGTAAATGAGGTTGACGATGAGAAAGGTCCTAGCCACTTCACG TATACAACTAAACTTAACTACATGAATTCCCCAAGCTCAATGAGAAAGATGCAAGGCTGC AAATGCACAAGCGTATGCCTACCCGGTGATAACAACTGTTCTTGTACGCATCGAAATGCT GGTGACCTTCCTTACAGTGCTTCGGGCATACTTGTTAGTCGGATGCCTATGTTATATGAG TGCAATGATTCATGCACTTGTTTACATAATTGCCGGAACCGGGTTGTACAAAAAGGTATC AAGATCCACTTTGAGGTGTTTAAAACGGGAGATCGAGGCTGGGGCCTGCGTAGTTGGGAT CCAATCCGAGCAGGCACATTCATCTGTGAATATGCAGGTGTAATTGTTGACAAGAATGCT CTTGATGCAGAAGATGATTATATCTTTGAGACCCCTCCTTCGGAGCAGAACTTAAGATGG AACTATGCACCAGAATTACTGGGTGAACCTAGTCTTTCTGACTTAAATGAATCATCTAAG CAGTTGCCAATAATTATTAGTGCAAAATATACTGGTAACATAGCTCGCTTCATGAACCAC AGCTGCTCACCTAATGTTTTTTGGCAACCAGTTCTGTATGACCATGGTGATGAGGGATAT CCACACATCGCATTCTTTGCAATTAAGCATATTCCTCCAATGACAGAGCTTACATATGAT TATGGTCAGAGCGGTAATTCAGGGTGTCGGAGGTCTAAAAGTTGCTTATGTTGGTCTCGC AAGTGCAGGGGTTCCTTTGGCTAAATAATCAACCCTTAAGGGATACTTTCCTAGTTGAAG ATCCTGTTAAATGTATGCCTGGGTCGGAATCTGATGACCTTATCCTTGATGAACAGAAGC AGCTTATGGTGGCGGCGGCATTATGGGTGTGGTGTTCCAGCCACAGTTGAAATAACTTTG CTGCCTCTTTCTATCCGGGGTTGGAATGCGGGGTAGAGTACAAACGACTAGATGTTGTAA TAAAGGGCAAGCTATGCTTCTGTGGTGTTGTTAGTTGTAGTTGTCTGCTCCGGTTTAAGA CCACCCAGTGGAATTCCTTCTATGTATTGTCATTGCGAAGATGTTTCAAGCCTGCAGTGA ATCTATCGTTTTCGATTTGTAATCCTAGCGGATTAATGTGTCCTGTGAATCTGTGATTGC CGTGGAGAGCGAATGAAGGCAACAATAATAATCCAGCTGGGCATTGTTCGTGCAGGGGTA AAGATAGGGGCAGAGTCAGTGCTGTGCGCTTGATTTATGATTCGGTGAATGACTTTGATG GTTGATTGCTTAGATT
Protein Sequence (840 aa)
>BART1_0-u30899.016 840 150831_barley_pseudomolecules MAGNQQPASVVLDYAAVLDAKPLRTLTPMFPAPLGMHTFTPKSSSSVVCVTPFGPYAGGT ELGMPGGVPPMLTSPSASADPKQVQPYTVHMNGTSNANGTTSNTMVTPVLQTPPAVTTQE SGKKKRGMVTPVLQTPPTVTTQESGKKKRGRPRRVQDTTTVPPVPPVQPVPTVHSVPSAP PEVNNIVLQTPTSAVSQESGKRKRGRPKRVPDVSVLSTPVPVADGTPILQTPPASSVHES VTKKRGRRSKLVQDISDTSTPPVHSKESEPFMQTPAVTVLEDGKRKRGRPKRVPDSSVTP SSHSVLTVDVDSGDTSKRGRPRKIDTSLLHLPSLFSDDPRESTDNILMMFDALRRRLMQL DEVKQVAKQQQNLKAGSIMMSAELRLSKNKRIGEVPGVEVGDMFYFRIEMCLVGLNSQSM AGIDYMSAKFGNEEDPVAISIVSAGVYEDAEDNDPDVLVYSGHGMSGKDDQKLERGNLAL ERSLHRGNPIRVVRTVKDLTCSTGKIYIYDGLYRIREAWVEKGKSGFNMFKHKLLREPGQ PDGIAVWKKTEKWRENPSSRDRVIVHDISYGVESKPICLVNEVDDEKGPSHFTYTTKLNY MNSPSSMRKMQGCKCTSVCLPGDNNCSCTHRNAGDLPYSASGILVSRMPMLYECNDSCTC LHNCRNRVVQKGIKIHFEVFKTGDRGWGLRSWDPIRAGTFICEYAGVIVDKNALDAEDDY IFETPPSEQNLRWNYAPELLGEPSLSDLNESSKQLPIIISAKYTGNIARFMNHSCSPNVF WQPVLYDHGDEGYPHIAFFAIKHIPPMTELTYDYGQSGNSGCRRSKSCLCWSRKCRGSFG