Matching HORVU genes

BarleyRTD transcripts were compared to the location of the IBSC 2017 Predicted Transcripts. Overlapping status is classified as Containing (HORVU is smaller than the BART), Contained (BART is smaller than the HORVU), Partial-Overlap (Overlap exists), and Undefined (the BART transcript has no overlapping HORVU).

HORVU ID	Percentage overlap	BART Gene Direction	HORVU Gene Direction	Overlap Length	Gene Length Difference	Overlapping Status
HORVU4Hr1G074120	97.8	+	+	8714	-193	Containing

Transcripts from Gene BART1_0-u30899

Transcript	Length(bp)	Description
BART1_0-u30899.001	3928	3928 bp MSTRG.30899.1 MSTRG.30899
BART1_0-u30899.002	3932	3932 bp MSTRG.30899.2 MSTRG.30899
BART1_0-u30899.003	3655	3655 bp MSTRG.30899.3 MSTRG.30899
BART1_0-u30899.004	3199	3199 bp MSTRG.30899.4 MSTRG.30899
BART1_0-u30899.005	3342	3342 bp MSTRG.30899.5 MSTRG.30899
BART1_0-u30899.006	3988	3988 bp MSTRG.30899.6 MSTRG.30899
BART1_0-u30899.007	404	404 bp MSTRG.30899.7 MSTRG.30899
BART1_0-u30899.008	3202	3202 bp MSTRG.30899.8 MSTRG.30899
BART1_0-u30899.009	4723	4723 bp MSTRG.30899.9 MSTRG.30899
BART1_0-u30899.010	3291	3291 bp MSTRG.30899.10 MSTRG.30899
BART1_0-u30899.011	3129	3129 bp MSTRG.30899.11 MSTRG.30899
BART1_0-u30899.012	3764	3764 bp MSTRG.30899.12 MSTRG.30899
BART1_0-u30899.013	3514	3514 bp MSTRG.30899.13 MSTRG.30899
BART1_0-u30899.014	904	904 bp MSTRG.30899.14 MSTRG.30899
BART1_0-u30899.015	3690	3690 bp MSTRG.30899.15 MSTRG.30899
BART1_0-u30899.016	3916	3916 bp MSTRG.30899.16 MSTRG.30899
BART1_0-u30899.017	3754	3754 bp MSTRG.30899.17 MSTRG.30899
BART1_0-u30899.018	3412	3412 bp MSTRG.30899.18 MSTRG.30899
BART1_0-u30899.019	3535	3535 bp MSTRG.30899.19 MSTRG.30899
BART1_0-u30899.020	3479	3479 bp MSTRG.30899.20 MSTRG.30899

Exon Structure of BART1_0-u30899

grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons

Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-30)

Database	Hit	Frame	E-value	Score	% Identity	Description
Rice PP7	LOC_Os11g38900.1	+3	0.0	1229	648/853 (76%)	protein|histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH1, putative, expressed
TAIR PP10	AT1G73100 @ ARAPORT AT1G73100.1 @ TAIR	+3	0.0	556	272/511 (53%)	Symbols: SUVH3, SDG19 | SU(VAR)3-9 homolog 3 | chr1:27491970-27493979 FORWARD LENGTH=669
BRACH PP3	Bradi1g53840.1.p	+3	0.0	1292	687/855 (80%)	pacid=32801893 transcript=Bradi1g53840.1 locus=Bradi1g53840 ID=Bradi1g53840.1.v3.1 annot-version=v3.1

GO Annotation

Generated by PANNZER

GO ID	GO terms
GO:0005634	nucleus
GO:0003677	DNA binding
GO:0008270	zinc ion binding
GO:0034968	histone lysine methylation
GO:0018024	histone-lysine N-methyltransferase activity
GO:0016021	integral component of membrane
GO:0005694	chromosome

Barley PseudoMolecules GBrowse

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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons