- Transcript BART1_0-u30899.015
- Transcript IDBART1_0-u30899.015
- Gene IDBART1_0-u30899
Barley RTD
Exon Structure of BART1_0-u30899.015
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr4H | 1 | 593062202 | 593062088 | + |
| chr4H | 2 | 593068884 | 593066220 | + |
| chr4H | 3 | 593069956 | 593069493 | + |
| chr4H | 4 | 593070519 | 593070074 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 1.53004 | 0 | 0.0000000703895 |
| morex | ETI | 2.92714 | 0.0330728 | 3.54756 |
| morex | LEA | 0 | 0 | 0 |
| morex | EPI | 5.32899 | 2.83379 | 0.37128 |
| morex | ROO | 0.00000449153 | 0 | 0 |
| morex | ROO2 | 0 | 0.603498 | 0.354836 |
| morex | NOD | 0 | 0.0000115278 | 0.240595 |
| morex | RAC | 2.74207 | 2.90748 | 0.0267607 |
| morex | INF1 | 0 | 0 | 0 |
| morex | INF2 | 0 | 0 | 0.00000000381147 |
| morex | CAR5 | 0.0000000214221 | 0 | 0 |
| morex | CAR15 | 0 | 0 | 0 |
| morex | LEM | 2.58914 | 2.50803 | 1.44036 |
| morex | LOD | 0.0000621684 | 4.37187 | 2.64579 |
| morex | PAL | 4.62625 | 3.67741 | 5.55604 |
| morex | SEN | 0.82828 | 0.0418877 | 1.8498 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os11g38900.1 | +3 | 0.0 | 1229 | 648/853 (76%) | protein|histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH1, putative, expressed |
| TAIR PP10 | AT1G73100 @ ARAPORT AT1G73100.1 @ TAIR |
+3 | 0.0 | 556 | 272/511 (53%) | Symbols: SUVH3, SDG19 | SU(VAR)3-9 homolog 3 | chr1:27491970-27493979 FORWARD LENGTH=669 |
| BRACH PP3 | Bradi1g53840.1.p | +3 | 0.0 | 1292 | 687/855 (80%) | pacid=32801893 transcript=Bradi1g53840.1 locus=Bradi1g53840 ID=Bradi1g53840.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (3690 bp)
>BART1_0-u30899.015 3690 150831_barley_pseudomolecules CGTGGCGGCGCGGCGGCGCGATTCCTTTGCTGCTCGGCGGCAGCGGCCGACGGAAGCAGC GGCCGGGGTAGCAGCGACGGCAAGGCTCGGTTCTCTCCTCTCCCTCCCAACCAAGCTTTC TCCGAAGTATGGCTTGTGGACAAGTGTAGACCTGTAGACAAAGAGACAAAGAAATTGCTG ACATAAGTCCTTATTTGAGAAAGATCAGTTGTCAGCTTACAATGGCTGGAAATCAGCAGC CGGCTTCAGTTGTGTTGGATTATGCAGCAGTCCTCGACGCCAAACCCTTGCGCACACTGA CCCCCATGTTCCCTGCACCGCTAGGGATGCACACTTTCACCCCTAAAAGCTCATCTTCAG TTGTCTGTGTCACCCCGTTTGGACCATATGCTGGAGGTACCGAACTGGGAATGCCTGGTG GTGTTCCGCCAATGTTAACATCACCGTCCGCTTCTGCAGATCCCAAGCAGGTGCAGCCAT ATACGGTTCATATGAATGGAACTTCTAATGCTAATGGTACTACAAGCAACACAATGGTTA CCCCTGTGTTGCAAACTCCTCCAGCAGTCACTACACAGGAGTCTGGTAAGAAGAAGAGGG GGATGGTTACCCCTGTGTTGCAAACTCCTCCAACAGTTACTACACAGGAGTCTGGTAAGA AGAAGAGGGGGAGGCCCAGGCGTGTGCAAGATACAACTACTGTTCCCCCGGTTCCTCCAG TTCAACCGGTTCCTACAGTTCATTCAGTTCCTTCAGCTCCTCCAGAAGTTAATAATATTG TTCTCCAGACACCTACTTCAGCCGTCTCACAGGAATCTGGTAAGAGGAAGAGGGGACGAC CCAAGCGTGTGCCAGATGTTTCTGTCTTATCAACTCCAGTGCCTGTAGCAGATGGTACGC CTATTTTACAGACACCTCCTGCATCTAGTGTACATGAATCTGTTACAAAGAAAAGGGGGC GGCGATCCAAGCTTGTGCAGGATATTTCAGATACTTCAACTCCCCCAGTTCATTCAAAAG AGAGTGAGCCCTTTATGCAGACTCCTGCAGTCACCGTATTGGAGGATGGTAAGAGGAAGA GAGGGCGGCCGAAGCGTGTGCCTGATAGTTCAGTGACTCCTTCAAGTCATTCTGTCCTTA CAGTAGATGTTGACAGTGGTGACACATCAAAACGTGGCCGGCCTAGAAAAATTGACACAA GCCTATTGCACCTGCCATCTTTGTTTTCAGACGATCCCAGGGAATCCACAGATAATATAC TTATGATGTTTGATGCACTGCGACGGCGGCTCATGCAGCTGGATGAGGTGAAGCAAGTAG CAAAACAGCAGCAAAACTTGAAGGCTGGGAGTATCATGATGAGCGCTGAACTTCGCCTCA GTAAGAACAAGAGGATTGGAGAGGTTCCAGGTGTTGAGGTTGGTGACATGTTCTACTTCA GAATTGAGATGTGCCTGGTAGGGTTAAATAGTCAGAGCATGGCAGGGATAGATTATATGT CTGCTAAGTTTGGTAACGAGGAGGACCCCGTGGCCATTAGTATTGTGTCAGCTGGTGTGT ATGAGGATGCTGAAGATAATGATCCAGATGTTCTGGTTTACAGTGGACATGGCATGTCTG GTAAGGATGACCAAAAGCTTGAGAGAGGTAATCTTGCACTGGAGAGAAGTTTGCATAGGG GTAATCCCATTAGAGTCGTTCGCACTGTGAAAGACTTGACTTGTTCAACTGGTAAGATAT ACATATATGATGGCCTTTACAGGATCAGAGAAGCCTGGGTAGAGAAAGGTAAATCTGGTT TCAATATGTTTAAACACAAGTTGCTCAGAGAACCTGGACAACCTGATGGCATTGCAGTGT GGAAGAAGACTGAAAAATGGAGGGAAAATCCATCCTCTAGAGATCGTGTTATAGTGCACG ACATATCATACGGTGTGGAAAGTAAGCCTATCTGCCTTGTAAATGAGGTTGACGATGAGA AAGGTCCTAGCCACTTCACGTATACAACTAAACTTAACTACATGAATTCCCCAAGCTCAA TGAGAAAGATGCAAGGCTGCAAATGCACAAGCGTATGCCTACCCGGTGATAACAACTGTT CTTGTACGCATCGAAATGCTGGTGACCTTCCTTACAGTGCTTCGGGCATACTTGTTAGTC GGATGCCTATGTTATATGAGTGCAATGATTCATGCACTTGTTTACATAATTGCCGGAACC GGGTTGTACAAAAAGGTATCAAGATCCACTTTGAGGTGTTTAAAACGGGAGATCGAGGCT GGGGCCTGCGTAGTTGGGATCCAATCCGAGCAGGCACATTCATCTGTGAATATGCAGGTG TAATTGTTGACAAGAATGCTCTTGATGCAGAAGATGATTATATCTTTGAGACCCCTCCTT CGGAGCAGAACTTAAGATGGAACTATGCACCAGAATTACTGGGTGAACCTAGTCTTTCTG ACTTAAATGAATCATCTAAGCAGTTGCCAATAATTATTAGTGCAAAATATACTGGTAACA TAGCTCGCTTCATGAACCACAGCTGCTCACCTAATGTTTTTTGGCAACCAGTTCTGTATG ACCATGGTGATGAGGGATATCCACACATCGCATTCTTTGCAATTAAGCATATTCCTCCAA TGACAGAGCTTACATATGATTATGGTCAGAGCGGTAATTCAGGGTGTCGGAGGTCTAAAA GTTGCTTATGTTGGTCTCGCAAGTGCAGGGGTTCCTTTGGCTAAATAATCAACCCTTAAG GGATACTTTCCTAGTTGAAGATCCTGTTAAATGTATGCCTGGGTCGGAATCTGATGACCT TATCCTTGATGAACAGAAGCAGCTTATGGTGGCGGCGGCATTATGGGTGTGGTGTTCCAG CCACAGTTGAAATAACTTTGCTGCCTCTTTCTATCCGGGGTTGGAATGCGGGGTAGAGTA CAAACGACTAGATGTTGTAATAAAGGGCAAGCTATGCTTCTGTGGTGTTGTTAGTTGTAG TTGTCTGCTCCGGTTTAAGACCACCCAGTGGAATTCCTTCTATGTATTGTCATTGCGAAG ATGTTTCAAGCCTGCAGTGAATCTATCGTTTTCGATTTGTAATCCTAGCGGATTAATGTG TCCTGTGAATCTGTGATTGCCGTGGAGAGCGAATGAAGGCAACAATAATAATCCAGCTGG GCATTGTTCGTGCAGGGGTAAAGATAGGGGCAGAGTCAGTGCTGTGCGCTTGATTTATGA TTCGATTTGGTGTGAAGGATGGTGCTCTGTTCCTATGAGCAGTAGGCTCGCTGGGATTTT GGGCTTTGCCGTGTATTTTGGTCCCTGCTTGGCATACCGTTTTCTGCACATTACAGGTGT AAAATAAATACAGACCTCCATCCACTGGTTTAGTTTCCAGCCGGAAGACACTCATGTCCA GTAAAATACACCTGTAAATTTTACATCCCTGTATTAAATTACACCTATACCAAGCGCATC CTTAGCGTTTCATATATGAGAATCTGGTGGTTACCCTATAGTCTGTCTGGACAGCATGCA TGAAATTCATTCATGAAGGAATCAACCAAAGCTCTCAAGCGACGCATATGTTCATCTAGC ATTTCATATCCGAACTTGATATGATACATGAGAATAAGGCCCAATTCTCTCAGAATCTAG GGATTCTCTCATAATCAAATCCCTTCCCAG
Protein Sequence (840 aa)
>BART1_0-u30899.015 840 150831_barley_pseudomolecules MAGNQQPASVVLDYAAVLDAKPLRTLTPMFPAPLGMHTFTPKSSSSVVCVTPFGPYAGGT ELGMPGGVPPMLTSPSASADPKQVQPYTVHMNGTSNANGTTSNTMVTPVLQTPPAVTTQE SGKKKRGMVTPVLQTPPTVTTQESGKKKRGRPRRVQDTTTVPPVPPVQPVPTVHSVPSAP PEVNNIVLQTPTSAVSQESGKRKRGRPKRVPDVSVLSTPVPVADGTPILQTPPASSVHES VTKKRGRRSKLVQDISDTSTPPVHSKESEPFMQTPAVTVLEDGKRKRGRPKRVPDSSVTP SSHSVLTVDVDSGDTSKRGRPRKIDTSLLHLPSLFSDDPRESTDNILMMFDALRRRLMQL DEVKQVAKQQQNLKAGSIMMSAELRLSKNKRIGEVPGVEVGDMFYFRIEMCLVGLNSQSM AGIDYMSAKFGNEEDPVAISIVSAGVYEDAEDNDPDVLVYSGHGMSGKDDQKLERGNLAL ERSLHRGNPIRVVRTVKDLTCSTGKIYIYDGLYRIREAWVEKGKSGFNMFKHKLLREPGQ PDGIAVWKKTEKWRENPSSRDRVIVHDISYGVESKPICLVNEVDDEKGPSHFTYTTKLNY MNSPSSMRKMQGCKCTSVCLPGDNNCSCTHRNAGDLPYSASGILVSRMPMLYECNDSCTC LHNCRNRVVQKGIKIHFEVFKTGDRGWGLRSWDPIRAGTFICEYAGVIVDKNALDAEDDY IFETPPSEQNLRWNYAPELLGEPSLSDLNESSKQLPIIISAKYTGNIARFMNHSCSPNVF WQPVLYDHGDEGYPHIAFFAIKHIPPMTELTYDYGQSGNSGCRRSKSCLCWSRKCRGSFG