- Transcript BART1_0-u30899.014
- Transcript IDBART1_0-u30899.014
- Gene IDBART1_0-u30899
Barley RTD
Exon Structure of BART1_0-u30899.014
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr4H | 1 | 593062202 | 593062086 | + |
| chr4H | 2 | 593070335 | 593069549 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 0.369089 | 0 | 0 |
| morex | ETI | 0 | 0 | 0 |
| morex | LEA | 0.242682 | 0 | 0 |
| morex | EPI | 0 | 0 | 0.523742 |
| morex | ROO | 0 | 0 | 0 |
| morex | ROO2 | 0.18399 | 0 | 0 |
| morex | NOD | 0.226523 | 0 | 0 |
| morex | RAC | 0.184534 | 0 | 0.571121 |
| morex | INF1 | 0 | 0 | 0.238899 |
| morex | INF2 | 0.308792 | 0 | 0 |
| morex | CAR5 | 0.215543 | 0.221789 | 0 |
| morex | CAR15 | 0 | 0 | 0 |
| morex | LEM | 0.514135 | 0.296146 | 1.03263 |
| morex | LOD | 0.206569 | 0.823916 | 0 |
| morex | PAL | 0 | 0.402002 | 0.242466 |
| morex | SEN | 0.267895 | 0 | 0 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | None | - | - | - | - | - |
| TAIR PP10 | None | - | - | - | - | - |
| BRACH PP3 | None | - | - | - | - | - |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (904 bp)
>BART1_0-u30899.014 904 150831_barley_pseudomolecules GCCGTGGCGGCGCGGCGGCGCGATTCCTTTGCTGCTCGGCGGCAGCGGCCGACGGAAGCA GCGGCCGGGGTAGCAGCGACGGCAAGGCTCGGTTCTCTCCTCTCCCTCCCAACCAAGAAG CAGCTTATGGTGGCGGCGGCATTATGGGTGTGGTGTTCCAGCCACAGTTGAAATAACTTT GCTGCCTCTTTCTATCCGGGGTTGGAATGCGGGGTAGAGTACAAACGACTAGATGTTGTA ATAAAGGGCAAGCTATGCTTCTGTGGTGTTGTTAGTTGTAGTTGTCTGCTCCGGTTTAAG ACCACCCAGTGGAATTCCTTCTATGTATTGTCATTGCGAAGATGTTTCAAGCCTGCAGTG AATCTATCGTTTTCGATTTGTAATCCTAGCGGATTAATGTGTCCTGTGAATCTGTGATTG CCGTGGAGAGCGAATGAAGGCAACAATAATAATCCAGCTGGGCATTGTTCGTGCAGGGGT AAAGATAGGGGCAGAGTCAGTGCTGTGCGCTTGATTTATGATTCGGTGAATGACTTTGAT GGTTGATTGCTTAGATTCGCTGCTTTTGTTCTGTAGCGATCTTTATTTTCTTCTTATTCT AACCCTATTCTCTCTGAAATTTGTTTTTCTGTTCTTGTTCAGATTTGGTGTGAAGGATGG TGCTCTGTTCCTATGAGCAGTAGGCTCGCTGGGATTTTGGGCTTTGCCGTGTATTTTGGT CCCTGCTTGGCATACCGTTTTCTGCACATTACAGGTGTAAAATAAATACAGACCTCCATC CACTGGTTTAGTTTCCAGCCGGAAGACACTCATGTCCAGTAAAATACACCTGTAAATTTT ACATCCCTGTATTAAATTACACCTATACCAAGCGCATCCTTAGCGTTTCATATATGAGAA TCTG
Protein Sequence ( aa)
>BART1_0-u30899.014 150831_barley_pseudomolecules