Transcript Data
Barley RTD
Links



Exon Structure of BART1_0-u30899.011

ChromosomeExonStartStopDirection
chr4H1593062202593062084+
chr4H2593065664593065576+
chr4H3593068884593066220+
chr4H4593070329593070074+


grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



Salmon TPM Values: sixteensamplesmorex

These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials


SampleTreatmentRep 1Rep 2Rep 3
morexEMB000
morexETI0.9514380.04033490.00499163
morexLEA0.000000006963260.511460.0284396
morexEPI0.00000001947910.9706220.124594
morexROO000
morexROO20.4212280.07820780.000000000184506
morexNOD01.181580
morexRAC0.000000003154971.357020.000734734
morexINF10.000000004041400
morexINF20.0000004596870.000002772710.219055
morexCAR50.00776040.08490320
morexCAR1500.000009632130
morexLEM1.048470.2688620.00424619
morexLOD0.0000002956340.000357760.00000000813365
morexPAL0.07646840.6828780.000000203091
morexSEN0.00001294391.179760.126428



Homology to Model Species (BLASTX to E-value < 1e-30)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP7 LOC_Os11g38900.1 +3 0.0 1229 648/853 (76%) protein|histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH1, putative, expressed
TAIR PP10 AT1G73100 @ ARAPORT
AT1G73100.1 @ TAIR		 +3 0.0 556 272/511 (53%) Symbols: SUVH3, SDG19 | SU(VAR)3-9 homolog 3 | chr1:27491970-27493979 FORWARD LENGTH=669
BRACH PP3 Bradi1g53840.1.p +3 0.0 1292 687/855 (80%) pacid=32801893 transcript=Bradi1g53840.1 locus=Bradi1g53840 ID=Bradi1g53840.1.v3.1 annot-version=v3.1




Barley PseudoMolecules GBrowse

Click here to see more tracks within GBrowse -->



grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



CDS Sequence (3129 bp)

>BART1_0-u30899.011 3129 150831_barley_pseudomolecules
CTGCCGTGGCGGCGCGGCGGCGCGATTCCTTTGCTGCTCGGCGGCAGCGGCCGACGGAAG
CAGCGGCCGGGGTAGCAGCGACGGCAAGGCTCGGTTCTCTCCTCTCCCTCCCAACCAAGG
AAGTTATTGTCTAATCTTAGTTCCGTTGTCGTACATATTCAAACAGCAAACAACAAACAA
CAAACATCTTCCCGATTCCTACTAATAGCTTTCTCCGAAGTATGGCTTGTGGACAAGTGT
AGACCTGTAGACAAAGAGACAAAGAAATTGCTGACATAAGTCCTTATTTGAGAAAGATCA
GTTGTCAGCTTACAATGGCTGGAAATCAGCAGCCGGCTTCAGTTGTGTTGGATTATGCAG
CAGTCCTCGACGCCAAACCCTTGCGCACACTGACCCCCATGTTCCCTGCACCGCTAGGGA
TGCACACTTTCACCCCTAAAAGCTCATCTTCAGTTGTCTGTGTCACCCCGTTTGGACCAT
ATGCTGGAGGTACCGAACTGGGAATGCCTGGTGGTGTTCCGCCAATGTTAACATCACCGT
CCGCTTCTGCAGATCCCAAGCAGGTGCAGCCATATACGGTTCATATGAATGGAACTTCTA
ATGCTAATGGTACTACAAGCAACACAATGGTTACCCCTGTGTTGCAAACTCCTCCAGCAG
TCACTACACAGGAGTCTGGTAAGAAGAAGAGGGGGATGGTTACCCCTGTGTTGCAAACTC
CTCCAACAGTTACTACACAGGAGTCTGGTAAGAAGAAGAGGGGGAGGCCCAGGCGTGTGC
AAGATACAACTACTGTTCCCCCGGTTCCTCCAGTTCAACCGGTTCCTACAGTTCATTCAG
TTCCTTCAGCTCCTCCAGAAGTTAATAATATTGTTCTCCAGACACCTACTTCAGCCGTCT
CACAGGAATCTGGTAAGAGGAAGAGGGGACGACCCAAGCGTGTGCCAGATGTTTCTGTCT
TATCAACTCCAGTGCCTGTAGCAGATGGTACGCCTATTTTACAGACACCTCCTGCATCTA
GTGTACATGAATCTGTTACAAAGAAAAGGGGGCGGCGATCCAAGCTTGTGCAGGATATTT
CAGATACTTCAACTCCCCCAGTTCATTCAAAAGAGAGTGAGCCCTTTATGCAGACTCCTG
CAGTCACCGTATTGGAGGATGGTAAGAGGAAGAGAGGGCGGCCGAAGCGTGTGCCTGATA
GTTCAGTGACTCCTTCAAGTCATTCTGTCCTTACAGTAGATGTTGACAGTGGTGACACAT
CAAAACGTGGCCGGCCTAGAAAAATTGACACAAGCCTATTGCACCTGCCATCTTTGTTTT
CAGACGATCCCAGGGAATCCACAGATAATATACTTATGATGTTTGATGCACTGCGACGGC
GGCTCATGCAGCTGGATGAGGTGAAGCAAGTAGCAAAACAGCAGCAAAACTTGAAGGCTG
GGAGTATCATGATGAGCGCTGAACTTCGCCTCAGTAAGAACAAGAGGATTGGAGAGGTTC
CAGGTGTTGAGGTTGGTGACATGTTCTACTTCAGAATTGAGATGTGCCTGGTAGGGTTAA
ATAGTCAGAGCATGGCAGGGATAGATTATATGTCTGCTAAGTTTGGTAACGAGGAGGACC
CCGTGGCCATTAGTATTGTGTCAGCTGGTGTGTATGAGGATGCTGAAGATAATGATCCAG
ATGTTCTGGTTTACAGTGGACATGGCATGTCTGGTAAGGATGACCAAAAGCTTGAGAGAG
GTAATCTTGCACTGGAGAGAAGTTTGCATAGGGGTAATCCCATTAGAGTCGTTCGCACTG
TGAAAGACTTGACTTGTTCAACTGGTAAGATATACATATATGATGGCCTTTACAGGATCA
GAGAAGCCTGGGTAGAGAAAGGTAAATCTGGTTTCAATATGTTTAAACACAAGTTGCTCA
GAGAACCTGGACAACCTGATGGCATTGCAGTGTGGAAGAAGACTGAAAAATGGAGGGAAA
ATCCATCCTCTAGAGATCGTGTTATAGTGCACGACATATCATACGGTGTGGAAAGTAAGC
CTATCTGCCTTGTAAATGAGGTTGACGATGAGAAAGGTCCTAGCCACTTCACGTATACAA
CTAAACTTAACTACATGAATTCCCCAAGCTCAATGAGAAAGATGCAAGGCTGCAAATGCA
CAAGCGTATGCCTACCCGGTGATAACAACTGTTCTTGTACGCATCGAAATGCTGGTGACC
TTCCTTACAGTGCTTCGGGCATACTTGTTAGTCGGATGCCTATGTTATATGAGTGCAATG
ATTCATGCACTTGTTTACATAATTGCCGGAACCGGGTTGTACAAAAAGGTATCAAGATCC
ACTTTGAGGTGTTTAAAACGGGAGATCGAGGCTGGGGCCTGCGTAGTTGGGATCCAATCC
GAGCAGGCACATTCATCTGTGAATATGCAGGTGTAATTGTTGACAAGAATGCTCTTGATG
CAGAAGATGATTATATCTTTGAGACCCCTCCTTCGGAGCAGAACTTAAGATGGAACTATG
CACCAGAATTACTGGGTGAACCTAGTCTTTCTGACTTAAATGAATCATCTAAGCAGTTGC
CAATAATTATTAGTGCAAAATATACTGGTAACATAGCTCGCTTCATGAACCACAGCTGCT
CACCTAATGTTTTTTGGCAACCAGTTCTGTATGACCATGGTGATGAGGGATATCCACACA
TCGCATTCTTTGCAATTAAGCATATTCCTCCAATGACAGAGCTTACATATGATTATGGTC
AGAGCGGTAATTCAGGGTGTCGGAGGTCTAAAAGTTGCTTATGTTGGTCTCGCAAGTGCA
GGGGTTCCTTTGGCTAAATAATCAACCCTTAAGGGATACTTTCCTAGTTGAAGATTTGGT
GTGAAGGATGGTGCTCTGTTCCTATGAGCAGTAGGCTCGCTGGGATTTTGGGCTTTGCCG
TGTATTTTGGTCCCTGCTTGGCATACCGTTTTCTGCACATTACAGGTGTAAAATAAATAC
AGACCTCCATCCACTGGTTTAGTTTCCAGCCGGAAGACACTCATGTCCAGTAAAATACAC
CTGTAAATTTTACATCCCTGTATTAAATTACACCTATACCAAGCGCATCCTTAGCGTTTC
ATATATGAG



Protein Sequence (840 aa)

>BART1_0-u30899.011 840 150831_barley_pseudomolecules
MAGNQQPASVVLDYAAVLDAKPLRTLTPMFPAPLGMHTFTPKSSSSVVCVTPFGPYAGGT
ELGMPGGVPPMLTSPSASADPKQVQPYTVHMNGTSNANGTTSNTMVTPVLQTPPAVTTQE
SGKKKRGMVTPVLQTPPTVTTQESGKKKRGRPRRVQDTTTVPPVPPVQPVPTVHSVPSAP
PEVNNIVLQTPTSAVSQESGKRKRGRPKRVPDVSVLSTPVPVADGTPILQTPPASSVHES
VTKKRGRRSKLVQDISDTSTPPVHSKESEPFMQTPAVTVLEDGKRKRGRPKRVPDSSVTP
SSHSVLTVDVDSGDTSKRGRPRKIDTSLLHLPSLFSDDPRESTDNILMMFDALRRRLMQL
DEVKQVAKQQQNLKAGSIMMSAELRLSKNKRIGEVPGVEVGDMFYFRIEMCLVGLNSQSM
AGIDYMSAKFGNEEDPVAISIVSAGVYEDAEDNDPDVLVYSGHGMSGKDDQKLERGNLAL
ERSLHRGNPIRVVRTVKDLTCSTGKIYIYDGLYRIREAWVEKGKSGFNMFKHKLLREPGQ
PDGIAVWKKTEKWRENPSSRDRVIVHDISYGVESKPICLVNEVDDEKGPSHFTYTTKLNY
MNSPSSMRKMQGCKCTSVCLPGDNNCSCTHRNAGDLPYSASGILVSRMPMLYECNDSCTC
LHNCRNRVVQKGIKIHFEVFKTGDRGWGLRSWDPIRAGTFICEYAGVIVDKNALDAEDDY
IFETPPSEQNLRWNYAPELLGEPSLSDLNESSKQLPIIISAKYTGNIARFMNHSCSPNVF
WQPVLYDHGDEGYPHIAFFAIKHIPPMTELTYDYGQSGNSGCRRSKSCLCWSRKCRGSFG