- Transcript BART1_0-u30899.009
- Transcript IDBART1_0-u30899.009
- Gene IDBART1_0-u30899
Barley RTD
Exon Structure of BART1_0-u30899.009
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr4H | 1 | 593063161 | 593062084 | + |
| chr4H | 2 | 593068884 | 593066220 | + |
| chr4H | 3 | 593070472 | 593069493 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 0 | 0.463522 | 0.394577 |
| morex | ETI | 0.242916 | 0.171383 | 0.212985 |
| morex | LEA | 0.336921 | 0.219479 | 0.448283 |
| morex | EPI | 0.115853 | 0.912592 | 0.313594 |
| morex | ROO | 0.177836 | 0.427799 | 0.105176 |
| morex | ROO2 | 0.126048 | 0.0601261 | 0.307945 |
| morex | NOD | 0.190223 | 0.206749 | 0.0843187 |
| morex | RAC | 0.714249 | 0.550341 | 0.39011 |
| morex | INF1 | 1.06186 | 1.01749 | 1.13836 |
| morex | INF2 | 2.71366 | 1.62883 | 1.3006 |
| morex | CAR5 | 1.92693 | 1.32584 | 0.722408 |
| morex | CAR15 | 0.621296 | 0.879099 | 0.315082 |
| morex | LEM | 0.303634 | 0.472997 | 0.318917 |
| morex | LOD | 0.413804 | 0.322676 | 0.255594 |
| morex | PAL | 0.200468 | 0.281238 | 0.140331 |
| morex | SEN | 0.130182 | 0.265478 | 0.0892484 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os11g38900.1 | +3 | 0.0 | 1229 | 648/853 (76%) | protein|histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH1, putative, expressed |
| TAIR PP10 | AT1G73100 @ ARAPORT AT1G73100.1 @ TAIR |
+3 | 0.0 | 556 | 272/511 (53%) | Symbols: SUVH3, SDG19 | SU(VAR)3-9 homolog 3 | chr1:27491970-27493979 FORWARD LENGTH=669 |
| BRACH PP3 | Bradi1g53840.1.p | +3 | 0.0 | 1292 | 687/855 (80%) | pacid=32801893 transcript=Bradi1g53840.1 locus=Bradi1g53840 ID=Bradi1g53840.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (4723 bp)
>BART1_0-u30899.009 4723 150831_barley_pseudomolecules CTGCCGTGGCGGCGCGGCGGCGCGATTCCTTTGCTGCTCGGCGGCAGCGGCCGACGGAAG CAGCGGCCGGGGTAGCAGCGACGGCAAGGCTCGGTTCTCTCCTCTCCCTCCCAACCAAGG TAAGAAACGGAGATCTGCTAGCCGCGTACATGGTCATAGAATGTTTCCCCAGCTGCGCGC ACTGCTGTGGATCGATGTCGCCGTCCACACGATTCCGGATTTTTTTTGTTTTGTTTTACA TCAACATGGTTTTGGACTGTGTGTTGCTGCGCATACGATTGTTGATGGCAGTTGTTTCGT TTGTGCGGCATATTTTTTTTATAGCATACGCGCATTGTTGATGCCAAGGTGATGGATTGA AGGAAAAGGATGGCCAGGGGAGCTGCTGTTTTTGGGGGCTCTTGCTGCTGTGTTCTTAAG CTATGTCTGTTTGTGATTGTTGGGCTATAAAATAAGGAGGGGAAGACCACATGGTGAATC TGGGGTAGAAAGGGTTGGTTGGCCACTGTGCTATACTGAGATATGATTGTAGTCTGGTGC GATTCAAGAAACTACCTAGTTTCTGCTCTCCCATTCGGGAGCACTACTTATGTTGCTTAA AAACATAATGATGTCTAATTCTGCATTTGTAAATCACAGCGATAACAAACTAAAAAAACT GATTAGACCCTTGTAAGAGTTAAGGGTGTACTTAGACAATTAAGGATTCGGTTAGCAACT CTCTCCTCAGATGCGCAGCTAGTCACATCTCTGTTCGATGACCACAGTGGCCATTGCTAT GCCTAATAACCATAGTTCAAAAAAGCGCTAGGTGTTAATTGTGCGTTTTGCCACCGCCTT GCGCTTTTCTGACCAAAGCGCATGCTTATGCGCAATTATGCGCAGACTAAGCGCTGCGCT AGGCGTTTTGTTATCGCCTAGAGCCTAAGCGCTCGCTTAGGCGTGCCTTTTTTAACTATG CTAATAACCAAGGTGGACATGACTAGGGTTTGTTTTCTCCACTCATTTTTCTAGGGATTT TTCTCTCCTCGTGTGTTGTGCAGTGCTTTGTGCCAACACGTGGGACTGCAAGTGTTGGCT TTCTCCGAAGTATGGCTTGTGGACAAGTGTAGACCTGTAGACAAAGAGACAAAGAAATTG CTGACATAAGTCCTTATTTGAGAAAGATCAGTTGTCAGCTTACAATGGCTGGAAATCAGC AGCCGGCTTCAGTTGTGTTGGATTATGCAGCAGTCCTCGACGCCAAACCCTTGCGCACAC TGACCCCCATGTTCCCTGCACCGCTAGGGATGCACACTTTCACCCCTAAAAGCTCATCTT CAGTTGTCTGTGTCACCCCGTTTGGACCATATGCTGGAGGTACCGAACTGGGAATGCCTG GTGGTGTTCCGCCAATGTTAACATCACCGTCCGCTTCTGCAGATCCCAAGCAGGTGCAGC CATATACGGTTCATATGAATGGAACTTCTAATGCTAATGGTACTACAAGCAACACAATGG TTACCCCTGTGTTGCAAACTCCTCCAGCAGTCACTACACAGGAGTCTGGTAAGAAGAAGA GGGGGATGGTTACCCCTGTGTTGCAAACTCCTCCAACAGTTACTACACAGGAGTCTGGTA AGAAGAAGAGGGGGAGGCCCAGGCGTGTGCAAGATACAACTACTGTTCCCCCGGTTCCTC CAGTTCAACCGGTTCCTACAGTTCATTCAGTTCCTTCAGCTCCTCCAGAAGTTAATAATA TTGTTCTCCAGACACCTACTTCAGCCGTCTCACAGGAATCTGGTAAGAGGAAGAGGGGAC GACCCAAGCGTGTGCCAGATGTTTCTGTCTTATCAACTCCAGTGCCTGTAGCAGATGGTA CGCCTATTTTACAGACACCTCCTGCATCTAGTGTACATGAATCTGTTACAAAGAAAAGGG GGCGGCGATCCAAGCTTGTGCAGGATATTTCAGATACTTCAACTCCCCCAGTTCATTCAA AAGAGAGTGAGCCCTTTATGCAGACTCCTGCAGTCACCGTATTGGAGGATGGTAAGAGGA AGAGAGGGCGGCCGAAGCGTGTGCCTGATAGTTCAGTGACTCCTTCAAGTCATTCTGTCC TTACAGTAGATGTTGACAGTGGTGACACATCAAAACGTGGCCGGCCTAGAAAAATTGACA CAAGCCTATTGCACCTGCCATCTTTGTTTTCAGACGATCCCAGGGAATCCACAGATAATA TACTTATGATGTTTGATGCACTGCGACGGCGGCTCATGCAGCTGGATGAGGTGAAGCAAG TAGCAAAACAGCAGCAAAACTTGAAGGCTGGGAGTATCATGATGAGCGCTGAACTTCGCC TCAGTAAGAACAAGAGGATTGGAGAGGTTCCAGGTGTTGAGGTTGGTGACATGTTCTACT TCAGAATTGAGATGTGCCTGGTAGGGTTAAATAGTCAGAGCATGGCAGGGATAGATTATA TGTCTGCTAAGTTTGGTAACGAGGAGGACCCCGTGGCCATTAGTATTGTGTCAGCTGGTG TGTATGAGGATGCTGAAGATAATGATCCAGATGTTCTGGTTTACAGTGGACATGGCATGT CTGGTAAGGATGACCAAAAGCTTGAGAGAGGTAATCTTGCACTGGAGAGAAGTTTGCATA GGGGTAATCCCATTAGAGTCGTTCGCACTGTGAAAGACTTGACTTGTTCAACTGGTAAGA TATACATATATGATGGCCTTTACAGGATCAGAGAAGCCTGGGTAGAGAAAGGTAAATCTG GTTTCAATATGTTTAAACACAAGTTGCTCAGAGAACCTGGACAACCTGATGGCATTGCAG TGTGGAAGAAGACTGAAAAATGGAGGGAAAATCCATCCTCTAGAGATCGTGTTATAGTGC ACGACATATCATACGGTGTGGAAAGTAAGCCTATCTGCCTTGTAAATGAGGTTGACGATG AGAAAGGTCCTAGCCACTTCACGTATACAACTAAACTTAACTACATGAATTCCCCAAGCT CAATGAGAAAGATGCAAGGCTGCAAATGCACAAGCGTATGCCTACCCGGTGATAACAACT GTTCTTGTACGCATCGAAATGCTGGTGACCTTCCTTACAGTGCTTCGGGCATACTTGTTA GTCGGATGCCTATGTTATATGAGTGCAATGATTCATGCACTTGTTTACATAATTGCCGGA ACCGGGTTGTACAAAAAGGTATCAAGATCCACTTTGAGGTGTTTAAAACGGGAGATCGAG GCTGGGGCCTGCGTAGTTGGGATCCAATCCGAGCAGGCACATTCATCTGTGAATATGCAG GTGTAATTGTTGACAAGAATGCTCTTGATGCAGAAGATGATTATATCTTTGAGACCCCTC CTTCGGAGCAGAACTTAAGATGGAACTATGCACCAGAATTACTGGGTGAACCTAGTCTTT CTGACTTAAATGAATCATCTAAGCAGTTGCCAATAATTATTAGTGCAAAATATACTGGTA ACATAGCTCGCTTCATGAACCACAGCTGCTCACCTAATGTTTTTTGGCAACCAGTTCTGT ATGACCATGGTGATGAGGGATATCCACACATCGCATTCTTTGCAATTAAGCATATTCCTC CAATGACAGAGCTTACATATGATTATGGTCAGAGCGGTAATTCAGGGTGTCGGAGGTCTA AAAGTTGCTTATGTTGGTCTCGCAAGTGCAGGGGTTCCTTTGGCTAAATAATCAACCCTT AAGGGATACTTTCCTAGTTGAAGATCCTGTTAAATGTATGCCTGGGTCGGAATCTGATGA CCTTATCCTTGATGAACAGAAGCAGCTTATGGTGGCGGCGGCATTATGGGTGTGGTGTTC CAGCCACAGTTGAAATAACTTTGCTGCCTCTTTCTATCCGGGGTTGGAATGCGGGGTAGA GTACAAACGACTAGATGTTGTAATAAAGGGCAAGCTATGCTTCTGTGGTGTTGTTAGTTG TAGTTGTCTGCTCCGGTTTAAGACCACCCAGTGGAATTCCTTCTATGTATTGTCATTGCG AAGATGTTTCAAGCCTGCAGTGAATCTATCGTTTTCGATTTGTAATCCTAGCGGATTAAT GTGTCCTGTGAATCTGTGATTGCCGTGGAGAGCGAATGAAGGCAACAATAATAATCCAGC TGGGCATTGTTCGTGCAGGGGTAAAGATAGGGGCAGAGTCAGTGCTGTGCGCTTGATTTA TGATTCGGTGAATGACTTTGATGGTTGATTGCTTAGATTCGCTGCTTTTGTTCTGTAGCG ATCTTTATTTTCTTCTTATTCTAACCCTATTCTCTCTGAAATTTGTTTTTCTGTTCTTGT TCAGATTTGGTGTGAAGGATGGTGCTCTGTTCCTATGAGCAGTAGGCTCGCTGGGATTTT GGGCTTTGCCGTGTATTTTGGTCCCTGCTTGGCATACCGTTTTCTGCACATTACAGGTGT AAAATAAATACAGACCTCCATCCACTGGTTTAGTTTCCAGCCGGAAGACACTCATGTCCA GTAAAATACACCTGTAAATTTTACATCCCTGTATTAAATTACACCTATACCAAGCGCATC CTTAGCGTTTCATATATGAGAATCTGGTGGTTACCCTATAGTCTGTCTGGACAGCATGCA TGAAATTCATTCATGAAGGAATCAACCAAAGCTCTCAAGCGACGCATATGTTCATCTAGC ATTTCATATCCGAACTTGATATGATACATGAGAATAAGGCCCA
Protein Sequence (840 aa)
>BART1_0-u30899.009 840 150831_barley_pseudomolecules MAGNQQPASVVLDYAAVLDAKPLRTLTPMFPAPLGMHTFTPKSSSSVVCVTPFGPYAGGT ELGMPGGVPPMLTSPSASADPKQVQPYTVHMNGTSNANGTTSNTMVTPVLQTPPAVTTQE SGKKKRGMVTPVLQTPPTVTTQESGKKKRGRPRRVQDTTTVPPVPPVQPVPTVHSVPSAP PEVNNIVLQTPTSAVSQESGKRKRGRPKRVPDVSVLSTPVPVADGTPILQTPPASSVHES VTKKRGRRSKLVQDISDTSTPPVHSKESEPFMQTPAVTVLEDGKRKRGRPKRVPDSSVTP SSHSVLTVDVDSGDTSKRGRPRKIDTSLLHLPSLFSDDPRESTDNILMMFDALRRRLMQL DEVKQVAKQQQNLKAGSIMMSAELRLSKNKRIGEVPGVEVGDMFYFRIEMCLVGLNSQSM AGIDYMSAKFGNEEDPVAISIVSAGVYEDAEDNDPDVLVYSGHGMSGKDDQKLERGNLAL ERSLHRGNPIRVVRTVKDLTCSTGKIYIYDGLYRIREAWVEKGKSGFNMFKHKLLREPGQ PDGIAVWKKTEKWRENPSSRDRVIVHDISYGVESKPICLVNEVDDEKGPSHFTYTTKLNY MNSPSSMRKMQGCKCTSVCLPGDNNCSCTHRNAGDLPYSASGILVSRMPMLYECNDSCTC LHNCRNRVVQKGIKIHFEVFKTGDRGWGLRSWDPIRAGTFICEYAGVIVDKNALDAEDDY IFETPPSEQNLRWNYAPELLGEPSLSDLNESSKQLPIIISAKYTGNIARFMNHSCSPNVF WQPVLYDHGDEGYPHIAFFAIKHIPPMTELTYDYGQSGNSGCRRSKSCLCWSRKCRGSFG