- Transcript BART1_0-u30899.008
- Transcript IDBART1_0-u30899.008
- Gene IDBART1_0-u30899
Barley RTD
Exon Structure of BART1_0-u30899.008
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr4H | 1 | 593062202 | 593062083 | + |
| chr4H | 2 | 593068884 | 593066220 | + |
| chr4H | 3 | 593069971 | 593069555 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 0.0000324304 | 18.5125 | 11.673 |
| morex | ETI | 5.25955 | 8.82733 | 8.66083 |
| morex | LEA | 11.6336 | 12.6929 | 3.84743 |
| morex | EPI | 0 | 0.457831 | 2.61611 |
| morex | ROO | 0.545065 | 8.8793 | 3.52894 |
| morex | ROO2 | 4.60397 | 5.53946 | 7.12714 |
| morex | NOD | 5.24993 | 8.81087 | 3.45728 |
| morex | RAC | 6.83706 | 10.5958 | 13.6943 |
| morex | INF1 | 48.5423 | 39.6582 | 35.0559 |
| morex | INF2 | 69.0496 | 59.9999 | 59.5756 |
| morex | CAR5 | 35.9955 | 32.6675 | 33.5832 |
| morex | CAR15 | 16.5058 | 21.9578 | 25.6844 |
| morex | LEM | 12.4945 | 6.90695 | 8.29249 |
| morex | LOD | 9.56777 | 9.05256 | 5.25196 |
| morex | PAL | 7.06441 | 12.9998 | 6.1714 |
| morex | SEN | 4.53856 | 8.56402 | 6.96722 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os11g38900.1 | +2 | 0.0 | 1229 | 648/853 (76%) | protein|histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH1, putative, expressed |
| TAIR PP10 | AT1G73100 @ ARAPORT AT1G73100.1 @ TAIR |
+2 | 0.0 | 556 | 272/511 (53%) | Symbols: SUVH3, SDG19 | SU(VAR)3-9 homolog 3 | chr1:27491970-27493979 FORWARD LENGTH=669 |
| BRACH PP3 | Bradi1g53840.1.p | +2 | 0.0 | 1292 | 687/855 (80%) | pacid=32801893 transcript=Bradi1g53840.1 locus=Bradi1g53840 ID=Bradi1g53840.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (3202 bp)
>BART1_0-u30899.008 3202 150831_barley_pseudomolecules CCTGCCGTGGCGGCGCGGCGGCGCGATTCCTTTGCTGCTCGGCGGCAGCGGCCGACGGAA GCAGCGGCCGGGGTAGCAGCGACGGCAAGGCTCGGTTCTCTCCTCTCCCTCCCAACCAAG CTTTCTCCGAAGTATGGCTTGTGGACAAGTGTAGACCTGTAGACAAAGAGACAAAGAAAT TGCTGACATAAGTCCTTATTTGAGAAAGATCAGTTGTCAGCTTACAATGGCTGGAAATCA GCAGCCGGCTTCAGTTGTGTTGGATTATGCAGCAGTCCTCGACGCCAAACCCTTGCGCAC ACTGACCCCCATGTTCCCTGCACCGCTAGGGATGCACACTTTCACCCCTAAAAGCTCATC TTCAGTTGTCTGTGTCACCCCGTTTGGACCATATGCTGGAGGTACCGAACTGGGAATGCC TGGTGGTGTTCCGCCAATGTTAACATCACCGTCCGCTTCTGCAGATCCCAAGCAGGTGCA GCCATATACGGTTCATATGAATGGAACTTCTAATGCTAATGGTACTACAAGCAACACAAT GGTTACCCCTGTGTTGCAAACTCCTCCAGCAGTCACTACACAGGAGTCTGGTAAGAAGAA GAGGGGGATGGTTACCCCTGTGTTGCAAACTCCTCCAACAGTTACTACACAGGAGTCTGG TAAGAAGAAGAGGGGGAGGCCCAGGCGTGTGCAAGATACAACTACTGTTCCCCCGGTTCC TCCAGTTCAACCGGTTCCTACAGTTCATTCAGTTCCTTCAGCTCCTCCAGAAGTTAATAA TATTGTTCTCCAGACACCTACTTCAGCCGTCTCACAGGAATCTGGTAAGAGGAAGAGGGG ACGACCCAAGCGTGTGCCAGATGTTTCTGTCTTATCAACTCCAGTGCCTGTAGCAGATGG TACGCCTATTTTACAGACACCTCCTGCATCTAGTGTACATGAATCTGTTACAAAGAAAAG GGGGCGGCGATCCAAGCTTGTGCAGGATATTTCAGATACTTCAACTCCCCCAGTTCATTC AAAAGAGAGTGAGCCCTTTATGCAGACTCCTGCAGTCACCGTATTGGAGGATGGTAAGAG GAAGAGAGGGCGGCCGAAGCGTGTGCCTGATAGTTCAGTGACTCCTTCAAGTCATTCTGT CCTTACAGTAGATGTTGACAGTGGTGACACATCAAAACGTGGCCGGCCTAGAAAAATTGA CACAAGCCTATTGCACCTGCCATCTTTGTTTTCAGACGATCCCAGGGAATCCACAGATAA TATACTTATGATGTTTGATGCACTGCGACGGCGGCTCATGCAGCTGGATGAGGTGAAGCA AGTAGCAAAACAGCAGCAAAACTTGAAGGCTGGGAGTATCATGATGAGCGCTGAACTTCG CCTCAGTAAGAACAAGAGGATTGGAGAGGTTCCAGGTGTTGAGGTTGGTGACATGTTCTA CTTCAGAATTGAGATGTGCCTGGTAGGGTTAAATAGTCAGAGCATGGCAGGGATAGATTA TATGTCTGCTAAGTTTGGTAACGAGGAGGACCCCGTGGCCATTAGTATTGTGTCAGCTGG TGTGTATGAGGATGCTGAAGATAATGATCCAGATGTTCTGGTTTACAGTGGACATGGCAT GTCTGGTAAGGATGACCAAAAGCTTGAGAGAGGTAATCTTGCACTGGAGAGAAGTTTGCA TAGGGGTAATCCCATTAGAGTCGTTCGCACTGTGAAAGACTTGACTTGTTCAACTGGTAA GATATACATATATGATGGCCTTTACAGGATCAGAGAAGCCTGGGTAGAGAAAGGTAAATC TGGTTTCAATATGTTTAAACACAAGTTGCTCAGAGAACCTGGACAACCTGATGGCATTGC AGTGTGGAAGAAGACTGAAAAATGGAGGGAAAATCCATCCTCTAGAGATCGTGTTATAGT GCACGACATATCATACGGTGTGGAAAGTAAGCCTATCTGCCTTGTAAATGAGGTTGACGA TGAGAAAGGTCCTAGCCACTTCACGTATACAACTAAACTTAACTACATGAATTCCCCAAG CTCAATGAGAAAGATGCAAGGCTGCAAATGCACAAGCGTATGCCTACCCGGTGATAACAA CTGTTCTTGTACGCATCGAAATGCTGGTGACCTTCCTTACAGTGCTTCGGGCATACTTGT TAGTCGGATGCCTATGTTATATGAGTGCAATGATTCATGCACTTGTTTACATAATTGCCG GAACCGGGTTGTACAAAAAGGTATCAAGATCCACTTTGAGGTGTTTAAAACGGGAGATCG AGGCTGGGGCCTGCGTAGTTGGGATCCAATCCGAGCAGGCACATTCATCTGTGAATATGC AGGTGTAATTGTTGACAAGAATGCTCTTGATGCAGAAGATGATTATATCTTTGAGACCCC TCCTTCGGAGCAGAACTTAAGATGGAACTATGCACCAGAATTACTGGGTGAACCTAGTCT TTCTGACTTAAATGAATCATCTAAGCAGTTGCCAATAATTATTAGTGCAAAATATACTGG TAACATAGCTCGCTTCATGAACCACAGCTGCTCACCTAATGTTTTTTGGCAACCAGTTCT GTATGACCATGGTGATGAGGGATATCCACACATCGCATTCTTTGCAATTAAGCATATTCC TCCAATGACAGAGCTTACATATGATTATGGTCAGAGCGGTAATTCAGGGTGTCGGAGGTC TAAAAGTTGCTTATGTTGGTCTCGCAAGTGCAGGGGTTCCTTTGGCTAAATAATCAACCC TTAAGGGATACTTTCCTAGTTGAAGCTTATGGTGGCGGCGGCATTATGGGTGTGGTGTTC CAGCCACAGTTGAAATAACTTTGCTGCCTCTTTCTATCCGGGGTTGGAATGCGGGGTAGA GTACAAACGACTAGATGTTGTAATAAAGGGCAAGCTATGCTTCTGTGGTGTTGTTAGTTG TAGTTGTCTGCTCCGGTTTAAGACCACCCAGTGGAATTCCTTCTATGTATTGTCATTGCG AAGATGTTTCAAGCCTGCAGTGAATCTATCGTTTTCGATTTGTAATCCTAGCGGATTAAT GTGTCCTGTGAATCTGTGATTGCCGTGGAGAGCGAATGAAGGCAACAATAATAATCCAGC TGGGCATTGTTCGTGCAGGGGTAAAGATAGGGGCAGAGTCAGTGCTGTGCGCTTGATTTA TGATTCGGTGAATGACTTTGAT
Protein Sequence (840 aa)
>BART1_0-u30899.008 840 150831_barley_pseudomolecules MAGNQQPASVVLDYAAVLDAKPLRTLTPMFPAPLGMHTFTPKSSSSVVCVTPFGPYAGGT ELGMPGGVPPMLTSPSASADPKQVQPYTVHMNGTSNANGTTSNTMVTPVLQTPPAVTTQE SGKKKRGMVTPVLQTPPTVTTQESGKKKRGRPRRVQDTTTVPPVPPVQPVPTVHSVPSAP PEVNNIVLQTPTSAVSQESGKRKRGRPKRVPDVSVLSTPVPVADGTPILQTPPASSVHES VTKKRGRRSKLVQDISDTSTPPVHSKESEPFMQTPAVTVLEDGKRKRGRPKRVPDSSVTP SSHSVLTVDVDSGDTSKRGRPRKIDTSLLHLPSLFSDDPRESTDNILMMFDALRRRLMQL DEVKQVAKQQQNLKAGSIMMSAELRLSKNKRIGEVPGVEVGDMFYFRIEMCLVGLNSQSM AGIDYMSAKFGNEEDPVAISIVSAGVYEDAEDNDPDVLVYSGHGMSGKDDQKLERGNLAL ERSLHRGNPIRVVRTVKDLTCSTGKIYIYDGLYRIREAWVEKGKSGFNMFKHKLLREPGQ PDGIAVWKKTEKWRENPSSRDRVIVHDISYGVESKPICLVNEVDDEKGPSHFTYTTKLNY MNSPSSMRKMQGCKCTSVCLPGDNNCSCTHRNAGDLPYSASGILVSRMPMLYECNDSCTC LHNCRNRVVQKGIKIHFEVFKTGDRGWGLRSWDPIRAGTFICEYAGVIVDKNALDAEDDY IFETPPSEQNLRWNYAPELLGEPSLSDLNESSKQLPIIISAKYTGNIARFMNHSCSPNVF WQPVLYDHGDEGYPHIAFFAIKHIPPMTELTYDYGQSGNSGCRRSKSCLCWSRKCRGSFG