Transcript Data
Barley RTD
Links



Exon Structure of BART1_0-u30899.007

ChromosomeExonStartStopDirection
chr4H1593062202593062081+
chr4H2593070355593070074+


grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



Salmon TPM Values: sixteensamplesmorex

These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials


SampleTreatmentRep 1Rep 2Rep 3
morexEMB000
morexETI000
morexLEA000
morexEPI00.3241560
morexROO000
morexROO200.4013680
morexNOD000
morexRAC00.843170
morexINF1000
morexINF2000
morexCAR5000
morexCAR15000
morexLEM000
morexLOD00.6096740
morexPAL0.8398970.3796610.268495
morexSEN000



Homology to Model Species (BLASTX to E-value < 1e-30)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP7None-----
TAIR PP10None-----
BRACH PP3None-----




Barley PseudoMolecules GBrowse

Click here to see more tracks within GBrowse -->



grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



CDS Sequence (404 bp)

>BART1_0-u30899.007 404 150831_barley_pseudomolecules
CCCCTGCCGTGGCGGCGCGGCGGCGCGATTCCTTTGCTGCTCGGCGGCAGCGGCCGACGG
AAGCAGCGGCCGGGGTAGCAGCGACGGCAAGGCTCGGTTCTCTCCTCTCCCTCCCAACCA
AGATTTGGTGTGAAGGATGGTGCTCTGTTCCTATGAGCAGTAGGCTCGCTGGGATTTTGG
GCTTTGCCGTGTATTTTGGTCCCTGCTTGGCATACCGTTTTCTGCACATTACAGGTGTAA
AATAAATACAGACCTCCATCCACTGGTTTAGTTTCCAGCCGGAAGACACTCATGTCCAGT
AAAATACACCTGTAAATTTTACATCCCTGTATTAAATTACACCTATACCAAGCGCATCCT
TAGCGTTTCATATATGAGAATCTGGTGGTTACCCTATAGTCTGT



Protein Sequence ( aa)

>BART1_0-u30899.007  150831_barley_pseudomolecules