- Transcript BART1_0-u30899.001
- Transcript IDBART1_0-u30899.001
- Gene IDBART1_0-u30899
Barley RTD
Exon Structure of BART1_0-u30899.001
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr4H | 1 | 593061785 | 593061716 | + |
| chr4H | 2 | 593062202 | 593062084 | + |
| chr4H | 3 | 593068884 | 593066220 | + |
| chr4H | 4 | 593070622 | 593069549 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 2.04688 | 4.03918 | 2.53077 |
| morex | ETI | 0 | 0 | 0.256319 |
| morex | LEA | 2.23992 | 0.406101 | 1.44814 |
| morex | EPI | 0.536124 | 0.379403 | 0 |
| morex | ROO | 0 | 2.5336 | 0.697678 |
| morex | ROO2 | 0 | 0.28923 | 0 |
| morex | NOD | 2.73443 | 1.05162 | 0.644188 |
| morex | RAC | 0 | 0 | 1.58164 |
| morex | INF1 | 6.55382 | 7.46795 | 10.9189 |
| morex | INF2 | 3.73282 | 3.90873 | 8.0434 |
| morex | CAR5 | 5.99321 | 4.12993 | 4.11606 |
| morex | CAR15 | 1.23016 | 0.749666 | 2.54623 |
| morex | LEM | 0 | 1.09534 | 1.08011 |
| morex | LOD | 0.702783 | 0.369006 | 0.0000054736 |
| morex | PAL | 0.833484 | 1.27402 | 0.551136 |
| morex | SEN | 0.603535 | 0.733074 | 0 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os11g38900.1 | +2 | 0.0 | 1229 | 648/853 (76%) | protein|histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH1, putative, expressed |
| TAIR PP10 | AT1G73100 @ ARAPORT AT1G73100.1 @ TAIR |
+2 | 0.0 | 556 | 272/511 (53%) | Symbols: SUVH3, SDG19 | SU(VAR)3-9 homolog 3 | chr1:27491970-27493979 FORWARD LENGTH=669 |
| BRACH PP3 | Bradi1g53840.1.p | +2 | 0.0 | 1292 | 687/855 (80%) | pacid=32801893 transcript=Bradi1g53840.1 locus=Bradi1g53840 ID=Bradi1g53840.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (3928 bp)
>BART1_0-u30899.001 3928 150831_barley_pseudomolecules GAGTGGGGAACAGAAAGCCCTAGTCTTCCACGCTCTTCCCCTTCGTCTCTCTCCCCCCCC CCCCCCCCCCCTGCCGTGGCGGCGCGGCGGCGCGATTCCTTTGCTGCTCGGCGGCAGCGG CCGACGGAAGCAGCGGCCGGGGTAGCAGCGACGGCAAGGCTCGGTTCTCTCCTCTCCCTC CCAACCAAGCTTTCTCCGAAGTATGGCTTGTGGACAAGTGTAGACCTGTAGACAAAGAGA CAAAGAAATTGCTGACATAAGTCCTTATTTGAGAAAGATCAGTTGTCAGCTTACAATGGC TGGAAATCAGCAGCCGGCTTCAGTTGTGTTGGATTATGCAGCAGTCCTCGACGCCAAACC CTTGCGCACACTGACCCCCATGTTCCCTGCACCGCTAGGGATGCACACTTTCACCCCTAA AAGCTCATCTTCAGTTGTCTGTGTCACCCCGTTTGGACCATATGCTGGAGGTACCGAACT GGGAATGCCTGGTGGTGTTCCGCCAATGTTAACATCACCGTCCGCTTCTGCAGATCCCAA GCAGGTGCAGCCATATACGGTTCATATGAATGGAACTTCTAATGCTAATGGTACTACAAG CAACACAATGGTTACCCCTGTGTTGCAAACTCCTCCAGCAGTCACTACACAGGAGTCTGG TAAGAAGAAGAGGGGGATGGTTACCCCTGTGTTGCAAACTCCTCCAACAGTTACTACACA GGAGTCTGGTAAGAAGAAGAGGGGGAGGCCCAGGCGTGTGCAAGATACAACTACTGTTCC CCCGGTTCCTCCAGTTCAACCGGTTCCTACAGTTCATTCAGTTCCTTCAGCTCCTCCAGA AGTTAATAATATTGTTCTCCAGACACCTACTTCAGCCGTCTCACAGGAATCTGGTAAGAG GAAGAGGGGACGACCCAAGCGTGTGCCAGATGTTTCTGTCTTATCAACTCCAGTGCCTGT AGCAGATGGTACGCCTATTTTACAGACACCTCCTGCATCTAGTGTACATGAATCTGTTAC AAAGAAAAGGGGGCGGCGATCCAAGCTTGTGCAGGATATTTCAGATACTTCAACTCCCCC AGTTCATTCAAAAGAGAGTGAGCCCTTTATGCAGACTCCTGCAGTCACCGTATTGGAGGA TGGTAAGAGGAAGAGAGGGCGGCCGAAGCGTGTGCCTGATAGTTCAGTGACTCCTTCAAG TCATTCTGTCCTTACAGTAGATGTTGACAGTGGTGACACATCAAAACGTGGCCGGCCTAG AAAAATTGACACAAGCCTATTGCACCTGCCATCTTTGTTTTCAGACGATCCCAGGGAATC CACAGATAATATACTTATGATGTTTGATGCACTGCGACGGCGGCTCATGCAGCTGGATGA GGTGAAGCAAGTAGCAAAACAGCAGCAAAACTTGAAGGCTGGGAGTATCATGATGAGCGC TGAACTTCGCCTCAGTAAGAACAAGAGGATTGGAGAGGTTCCAGGTGTTGAGGTTGGTGA CATGTTCTACTTCAGAATTGAGATGTGCCTGGTAGGGTTAAATAGTCAGAGCATGGCAGG GATAGATTATATGTCTGCTAAGTTTGGTAACGAGGAGGACCCCGTGGCCATTAGTATTGT GTCAGCTGGTGTGTATGAGGATGCTGAAGATAATGATCCAGATGTTCTGGTTTACAGTGG ACATGGCATGTCTGGTAAGGATGACCAAAAGCTTGAGAGAGGTAATCTTGCACTGGAGAG AAGTTTGCATAGGGGTAATCCCATTAGAGTCGTTCGCACTGTGAAAGACTTGACTTGTTC AACTGGTAAGATATACATATATGATGGCCTTTACAGGATCAGAGAAGCCTGGGTAGAGAA AGGTAAATCTGGTTTCAATATGTTTAAACACAAGTTGCTCAGAGAACCTGGACAACCTGA TGGCATTGCAGTGTGGAAGAAGACTGAAAAATGGAGGGAAAATCCATCCTCTAGAGATCG TGTTATAGTGCACGACATATCATACGGTGTGGAAAGTAAGCCTATCTGCCTTGTAAATGA GGTTGACGATGAGAAAGGTCCTAGCCACTTCACGTATACAACTAAACTTAACTACATGAA TTCCCCAAGCTCAATGAGAAAGATGCAAGGCTGCAAATGCACAAGCGTATGCCTACCCGG TGATAACAACTGTTCTTGTACGCATCGAAATGCTGGTGACCTTCCTTACAGTGCTTCGGG CATACTTGTTAGTCGGATGCCTATGTTATATGAGTGCAATGATTCATGCACTTGTTTACA TAATTGCCGGAACCGGGTTGTACAAAAAGGTATCAAGATCCACTTTGAGGTGTTTAAAAC GGGAGATCGAGGCTGGGGCCTGCGTAGTTGGGATCCAATCCGAGCAGGCACATTCATCTG TGAATATGCAGGTGTAATTGTTGACAAGAATGCTCTTGATGCAGAAGATGATTATATCTT TGAGACCCCTCCTTCGGAGCAGAACTTAAGATGGAACTATGCACCAGAATTACTGGGTGA ACCTAGTCTTTCTGACTTAAATGAATCATCTAAGCAGTTGCCAATAATTATTAGTGCAAA ATATACTGGTAACATAGCTCGCTTCATGAACCACAGCTGCTCACCTAATGTTTTTTGGCA ACCAGTTCTGTATGACCATGGTGATGAGGGATATCCACACATCGCATTCTTTGCAATTAA GCATATTCCTCCAATGACAGAGCTTACATATGATTATGGTCAGAGCGGTAATTCAGGGTG TCGGAGGTCTAAAAGTTGCTTATGTTGGTCTCGCAAGTGCAGGGGTTCCTTTGGCTAAAT AATCAACCCTTAAGGGATACTTTCCTAGTTGAAGAAGCAGCTTATGGTGGCGGCGGCATT ATGGGTGTGGTGTTCCAGCCACAGTTGAAATAACTTTGCTGCCTCTTTCTATCCGGGGTT GGAATGCGGGGTAGAGTACAAACGACTAGATGTTGTAATAAAGGGCAAGCTATGCTTCTG TGGTGTTGTTAGTTGTAGTTGTCTGCTCCGGTTTAAGACCACCCAGTGGAATTCCTTCTA TGTATTGTCATTGCGAAGATGTTTCAAGCCTGCAGTGAATCTATCGTTTTCGATTTGTAA TCCTAGCGGATTAATGTGTCCTGTGAATCTGTGATTGCCGTGGAGAGCGAATGAAGGCAA CAATAATAATCCAGCTGGGCATTGTTCGTGCAGGGGTAAAGATAGGGGCAGAGTCAGTGC TGTGCGCTTGATTTATGATTCGGTGAATGACTTTGATGGTTGATTGCTTAGATTCGCTGC TTTTGTTCTGTAGCGATCTTTATTTTCTTCTTATTCTAACCCTATTCTCTCTGAAATTTG TTTTTCTGTTCTTGTTCAGATTTGGTGTGAAGGATGGTGCTCTGTTCCTATGAGCAGTAG GCTCGCTGGGATTTTGGGCTTTGCCGTGTATTTTGGTCCCTGCTTGGCATACCGTTTTCT GCACATTACAGGTGTAAAATAAATACAGACCTCCATCCACTGGTTTAGTTTCCAGCCGGA AGACACTCATGTCCAGTAAAATACACCTGTAAATTTTACATCCCTGTATTAAATTACACC TATACCAAGCGCATCCTTAGCGTTTCATATATGAGAATCTGGTGGTTACCCTATAGTCTG TCTGGACAGCATGCATGAAATTCATTCATGAAGGAATCAACCAAAGCTCTCAAGCGACGC ATATGTTCATCTAGCATTTCATATCCGAACTTGATATGATACATGAGAATAAGGCCCAAT TCTCTCAGAATCTAGGGATTCTCTCATAATCAAATCCCTTCCCAGCTTCTACAAGAAACT TTAAGCTCCATTTGTTTTACTCTCTCCGTCTCGGTTTACAAGTCCGGCATATGTACCTAG GTCGTCAATTTGATCAACTTAATGTGAG
Protein Sequence (840 aa)
>BART1_0-u30899.001 840 150831_barley_pseudomolecules MAGNQQPASVVLDYAAVLDAKPLRTLTPMFPAPLGMHTFTPKSSSSVVCVTPFGPYAGGT ELGMPGGVPPMLTSPSASADPKQVQPYTVHMNGTSNANGTTSNTMVTPVLQTPPAVTTQE SGKKKRGMVTPVLQTPPTVTTQESGKKKRGRPRRVQDTTTVPPVPPVQPVPTVHSVPSAP PEVNNIVLQTPTSAVSQESGKRKRGRPKRVPDVSVLSTPVPVADGTPILQTPPASSVHES VTKKRGRRSKLVQDISDTSTPPVHSKESEPFMQTPAVTVLEDGKRKRGRPKRVPDSSVTP SSHSVLTVDVDSGDTSKRGRPRKIDTSLLHLPSLFSDDPRESTDNILMMFDALRRRLMQL DEVKQVAKQQQNLKAGSIMMSAELRLSKNKRIGEVPGVEVGDMFYFRIEMCLVGLNSQSM AGIDYMSAKFGNEEDPVAISIVSAGVYEDAEDNDPDVLVYSGHGMSGKDDQKLERGNLAL ERSLHRGNPIRVVRTVKDLTCSTGKIYIYDGLYRIREAWVEKGKSGFNMFKHKLLREPGQ PDGIAVWKKTEKWRENPSSRDRVIVHDISYGVESKPICLVNEVDDEKGPSHFTYTTKLNY MNSPSSMRKMQGCKCTSVCLPGDNNCSCTHRNAGDLPYSASGILVSRMPMLYECNDSCTC LHNCRNRVVQKGIKIHFEVFKTGDRGWGLRSWDPIRAGTFICEYAGVIVDKNALDAEDDY IFETPPSEQNLRWNYAPELLGEPSLSDLNESSKQLPIIISAKYTGNIARFMNHSCSPNVF WQPVLYDHGDEGYPHIAFFAIKHIPPMTELTYDYGQSGNSGCRRSKSCLCWSRKCRGSFG