- Transcript BART1_0-u30598.013
- Transcript IDBART1_0-u30598.013
- Gene IDBART1_0-u30598
Barley RTD
Exon Structure of BART1_0-u30598.013
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr4H | 1 | 574827172 | 574827052 | + |
| chr4H | 2 | 574827612 | 574827520 | + |
| chr4H | 3 | 574829179 | 574828831 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 0 | 0 | 0 |
| morex | ETI | 0.282763 | 0 | 0 |
| morex | LEA | 0 | 0 | 0 |
| morex | EPI | 1.87346 | 3.75388 | 1.41124 |
| morex | ROO | 0.333627 | 0 | 0.593268 |
| morex | ROO2 | 0.552237 | 0 | 0 |
| morex | NOD | 0 | 0.678668 | 1.26313 |
| morex | RAC | 0.186262 | 0.521552 | 0.448628 |
| morex | INF1 | 0 | 0 | 0.480911 |
| morex | INF2 | 1.18093 | 0 | 0 |
| morex | CAR5 | 0.521335 | 0 | 0.943176 |
| morex | CAR15 | 0 | 0 | 0 |
| morex | LEM | 0 | 0.04524 | 0 |
| morex | LOD | 0 | 0.845851 | 0 |
| morex | PAL | 0 | 0.710162 | 0 |
| morex | SEN | 0 | 0.00567481 | 1.37808 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | None | - | - | - | - | - |
| TAIR PP10 | None | - | - | - | - | - |
| BRACH PP3 | None | - | - | - | - | - |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (563 bp)
>BART1_0-u30598.013 563 150831_barley_pseudomolecules CGGCGTTACTCGTCTTTGTCCTCTACTACATCCTCGACTTCCACATGTGTGAGAGCTCCG AAGCCAGAAAGAAGAAGGCTACCGAGCATGTTGCCGCGAGTTTGACCTGGTCAACTGGAG GATCCTCTTCAACGACTCCAACCAACAACGTGGTCAAATACGAGACTCTCATTCATGGTT TGCGTTTGGCCATCTCCATGGGCATTCACAAGAGGAACATCAGGCGCTTGCGAAAATTCT AGGAGGCGTTCACTTTGCGTGGGCGGCTGGAGCTACTGCATAGTTATGGTTGAACAATTT AAGCACCTGTATTATGTATAGCTTCGTGAGCATTGGAAGGCAACCTTTGCAAATCACTGG GTTTGAAATTTCTTGGATGCTCAAGACTAATGTGTTGATGGTAGCATATCGAATGAAAGG TCATATGCCCCAATGCGATTTTGTAGTTTTGTTTCGACGTGGATGAATGTTGGCTAGTGT GTCAGTCGCTGAAATGGGTCCAGAACAAGAGGATGCGACATGTAACACTGTTTTTTCAGT TATATGAGAATATACACCGGGCT
Protein Sequence ( aa)
>BART1_0-u30598.013 150831_barley_pseudomolecules