- Gene BART1_0-u30598
- Gene IDBART1_0-u30598
- Location chr4H: 574819324 - 574830804
Barley RTD
Matching HORVU genes
BarleyRTD transcripts were compared to the location of the IBSC 2017 Predicted Transcripts. Overlapping status is classified as Containing (HORVU is smaller than the BART), Contained (BART is smaller than the HORVU), Partial-Overlap (Overlap exists), and Undefined (the BART transcript has no overlapping HORVU).| HORVU ID | Percentage overlap | BART Gene Direction | HORVU Gene Direction | Overlap Length | Gene Length Difference | Overlapping Status |
|---|---|---|---|---|---|---|
| HORVU4Hr1G070280 | 11.4 | + | + | 1309 | -10172 | Containing |
| HORVU4Hr1G070270 | 84.6 | + | + | 9714 | -1767 | Containing |
| HORVU4Hr1G070300 | 5.8 | + | + | 667 | -10814 | Containing |
Transcripts from Gene BART1_0-u30598
| Transcript | Length(bp) | Description |
|---|---|---|
| BART1_0-u30598.001 | 4035 | 4035 bp MSTRG.30598.1 MSTRG.30598 |
| BART1_0-u30598.002 | 2912 | 2912 bp MSTRG.30598.2 MSTRG.30598 |
| BART1_0-u30598.003 | 1881 | 1881 bp MSTRG.30598.3 MSTRG.30598 |
| BART1_0-u30598.004 | 1733 | 1733 bp MSTRG.30598.4 MSTRG.30598 |
| BART1_0-u30598.005 | 1653 | 1653 bp MSTRG.30598.5 MSTRG.30598 |
| BART1_0-u30598.006 | 1766 | 1766 bp MSTRG.30598.6 MSTRG.30598 |
| BART1_0-u30598.007 | 1540 | 1540 bp MSTRG.30598.7 MSTRG.30598 |
| BART1_0-u30598.008 | 1444 | 1444 bp MSTRG.30598.8 MSTRG.30598 |
| BART1_0-u30598.009 | 1440 | 1440 bp MSTRG.30598.9 MSTRG.30598 |
| BART1_0-u30598.010 | 1308 | 1308 bp MSTRG.30598.10 MSTRG.30598 |
| BART1_0-u30598.011 | 1208 | 1208 bp MSTRG.30598.11 MSTRG.30598 |
| BART1_0-u30598.012 | 5308 | 5308 bp MSTRG.30598.12 MSTRG.30598 |
| BART1_0-u30598.013 | 563 | 563 bp MSTRG.30598.13 MSTRG.30598 |
Exon Structure of BART1_0-u30598
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os03g10460.1 | +1 | 6e-94 | 310 | 167/218 (77%) | protein|expressed protein |
| TAIR PP10 | AT2G18410 @ ARAPORT AT2G18410.1 @ TAIR |
+1 | 9e-41 | 155 | 87/204 (43%) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Histone acetylation protein 2 (InterPro:IPR019519); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr2:7990768-7992588 FORWARD LENGTH=374 |
| BRACH PP3 | Bradi1g71057.2.p | +1 | 2e-107 | 348 | 176/218 (81%) | pacid=32795801 transcript=Bradi1g71057.2 locus=Bradi1g71057 ID=Bradi1g71057.2.v3.1 annot-version=v3.1 |
GO Annotation
Generated by PANNZER| GO ID | GO terms |
|---|---|
| GO:0016998 | cell wall macromolecule catabolic process |
| GO:0016746 | transferase activity, transferring acyl groups |
| GO:0004020 | adenylylsulfate kinase activity |
| GO:0046983 | protein dimerization activity |
| GO:0002098 | tRNA wobble uridine modification |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0000103 | sulfate assimilation |
| GO:0005634 | nucleus |
| GO:0005975 | carbohydrate metabolic process |
| GO:0005524 | ATP binding |
| GO:0005737 | cytoplasm |
| GO:0033588 | Elongator holoenzyme complex |
| GO:0016310 | phosphorylation |
| GO:0030246 | carbohydrate binding |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons