- Transcript BART1_0-u30598.012
- Transcript IDBART1_0-u30598.012
- Gene IDBART1_0-u30598
Barley RTD
Exon Structure of BART1_0-u30598.012
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr4H | 1 | 574820930 | 574820448 | + |
| chr4H | 2 | 574821144 | 574821019 | + |
| chr4H | 3 | 574822272 | 574822203 | + |
| chr4H | 4 | 574822810 | 574822584 | + |
| chr4H | 5 | 574822997 | 574822908 | + |
| chr4H | 6 | 574823189 | 574823114 | + |
| chr4H | 7 | 574827172 | 574823332 | + |
| chr4H | 8 | 574829225 | 574828831 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 0.0519825 | 0.151431 | 0.296046 |
| morex | ETI | 0.18938 | 0.276357 | 0.29064 |
| morex | LEA | 0.267841 | 0.156409 | 0.204357 |
| morex | EPI | 0.141071 | 0.204542 | 0.250239 |
| morex | ROO | 0.0271777 | 0.168954 | 0.180964 |
| morex | ROO2 | 0.270461 | 0.32412 | 0.27161 |
| morex | NOD | 0.0720884 | 0.214328 | 0.0641964 |
| morex | RAC | 0.498885 | 0.559789 | 0.464493 |
| morex | INF1 | 0.841876 | 0.847655 | 0.841864 |
| morex | INF2 | 1.21883 | 1.79704 | 1.70476 |
| morex | CAR5 | 0.844594 | 0.967743 | 0.49536 |
| morex | CAR15 | 0.0742976 | 0.154036 | 0.247789 |
| morex | LEM | 0.466236 | 0.217086 | 0.358973 |
| morex | LOD | 0.369584 | 0.3084 | 0.215856 |
| morex | PAL | 0.259835 | 0.216379 | 0.397566 |
| morex | SEN | 0.371045 | 0.311397 | 0.319961 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os03g10460.1 | +1 | 6e-94 | 310 | 167/218 (77%) | protein|expressed protein |
| TAIR PP10 | AT2G18410 @ ARAPORT AT2G18410.1 @ TAIR |
+1 | 9e-41 | 155 | 87/204 (43%) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Histone acetylation protein 2 (InterPro:IPR019519); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr2:7990768-7992588 FORWARD LENGTH=374 |
| BRACH PP3 | Bradi1g71057.2.p | +1 | 2e-107 | 348 | 176/218 (81%) | pacid=32795801 transcript=Bradi1g71057.2 locus=Bradi1g71057 ID=Bradi1g71057.2.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (5308 bp)
>BART1_0-u30598.012 5308 150831_barley_pseudomolecules GGGGACTTGTGGTTGTGGCGTTTGACCGGAGCCCGGAAGTTTACCTGGATGCCATGCTTC GGCACGGCCTTGATTCGAATGCACTGAGTCGATGGTAAGATCTAGCAGATCAATAATTTT TAACAGGGAAACGAACCAGAGCTTTAGCGTAACCGACAATTCGCAGAGATTGTTTTGTGT GGAATGTTCTGCTGTGAACCGCACATAGCATTTCCTTCATGCAGGCCAGAGTTTAAATGT TCATGATGATAGAATTTACATGAATGTGCAATACCTATGTTTCAGAATTTTTGCATTGTT GCAACAGTGTTCGGATATTGGATTGCTACTCAGACCCACTCGGGTGGAAGAAAAATATCC GAAGTCAGCAGCATCATGAGGACAGTGGAACACCGTGCTCATCAAACAAAGGCAACATCA CAATTTTCAGAAGCGTGAAGGATGTTGATAAGTTATCGTGCTCCATAATTGATCTTGGAA GAGGGTTTGAAGGAGAAGGCAAGACCTATTTTTCTGTTGCTCTCGATTCAGTATGTACCT TGATGGAAACTTTTTTTCTTCCATGGAAACTGCAAAGCTTACTTGGGGCAGATTTTAATA CAGTACTAAATTAGCTCTATGTTAAGGCATGCTTCAGTGCAATCAATTTCAGGCCTTCTT AGTAATCTTCGGAGCCATGATCAGATATCATCAATCTTCTGGCTAATGCATTCAGATCTC CATGAAACCAAGTTTTCCCGAGCTTTTGAATGCCTTTCTACCATGGTTGCTTGTGTAGAG CCAGAAGTTGTAGATTCTGTATATGGAGAAGAACGTAGGGGGGACATGTCTTTCCTTGAG CATAACTATTCGAAAGCAAAGTTCCATGTGCGCCTGAAACGAAGGAATGGACGGGTGAAG CATCTGCATGAGGAGTTATGTGTTGAGGGATATGATGTAAAATTTGTTTCTGCTACTTCT GTAAGTATGGAAGTGAACCAAAGTCTACTACCTAAGGTTCAGTTCAATCTTGAGCTGTCA GAAAAGGAACGGAGTGACAGGGCAAATGTTGTTCTTCCTTTCGAACATCAAGGAAAGGGC GAGCCAATCCGTATATATGATGGACGGCGATCTCTCCCGGAGGCTCGTCAAGATCTCAAT TTTACTACGGCAGCTCTCCTGGATGAAACAGAAGCTCTTAAATCTGCAGACACGAAGGGT GAAATTCATTACCTTCGTGATTCTGATGATGAGCGACCTGACTCGGATGAAGACCCCGAT GATGATTTGGATATTTAGCCACAATGTGAGCTCTGTTTATCCTAGTGGTCAGCTATCAAG TCAAAGGTAACACTTACTGAGAACTGCCGACTTCTGTTATTAGTCTTCTCCATTCGTTAT TCCTTATGCCGATCACAAATGTTTAGTGTTCACGGTGCTAGACTGAGGGAGTATGTCTTC TGTTGTTGGTTACATAGAGGCTACTTTTTCTCACAAAAGAGAACTCCCTGTTCTATCAAA AGAATATTACCCACACTCCCAATGGCGGAGTGTATTGGAGACCAAACCAGGCCATGGCTA GTCCTTATCGTTGTATTTCATCTTAGGAGTTGGTACTATTTGGCCCAAGAACCACTGATG CCCACTGAGGAAGCAGTTGACACCTTCAATTTGTTTCATGCTCCGCCACTGCGCACTCTT ACAGTCTTACTGTTTTGAATTGTGAGTAAAAGTGTGCATCTAGTTCCTTCTCTAAAAGAG AAACACCAAAAAAAAAGAGAAACACCAAAATGTATTTAAACTAATACAAATTAACATCTG ACAACTGATATGTTCAAATGACATAGTAAAATTAATTTGGACACATACTGACTTGATTAT ATTCCAAAGACCAGTTTGCACCCACTGAATCGATTACAACTCAATTGATTCTACACACAG CAAATCATGTATGCCTCCCAAAAATTTCCTTGTCACCAAGCAACATAAGCAATACCAAGC CCCCAATCCAAAATATATTACTGATTACTGAACAAGGCCGTCTTACTATAACATCCGACC GACCTGTATTCAAAATAAGAAGCGTGCTCTGGTAGTTCCTCCATGAAAGCTGGGAGATTT TCGCGTGGCAGCCATCTAACATGCCCCAAATTCTAGTGGGACTCGCTTAACACACCCTAA ATATCCAACCTGGATTCCGACCAGTAAAGCAACCTTGAGCCGATTTTCTGAGCCGAAGAG GCGTGCGATGGGTGAGGAGATTTCTAAGTTGCCCGAGGCCGGCTTCATCAGAGAAGTCAA CCACCCGGTCTGGCTGGCCAACCCAGTTATGGTCCCCAAGAAGAATAAAACATGGCGCAT GTCTATTGATTACATAGATCTCAATAAAGCATGCCTCAAAGATTCTTTTTCGCTCCCTCA CATCGATCAGGTGATCAATTCGAAAGCAGGCTCCGAGTGTCTCTTTTCTGGATGAGTACT TCGGGCACCATGCTATCTGCATGAGGGAATCCGACCAACCAGCGACTTCCTTTATCACGT ACGGAGTTTTCATGTCGGCTCGGACGAAAGTTGTGCCGTTACTTCTAGGCAAATCCGATA ACAGTGGTGAACCATGTGCTCTGTCCAATATCATCAATAACAGTGACACGACTGGTCGGG TGGCGAAGTGGGCAACATAGTTCCTTCCTTTCAAGGTAAAATACCAGCCCAGTCAGGCCA TCAAGTCGTAGGTGCTCGTCGACTTCGTGATCGAGTGGACAGAAGCCCAACAGGCAGCCC CTAGTTAAATCGATTATCAGCATTCGACATGTACCTCGATGAATCCAAAATGCTCCCCGA CCTGTGTAGTAGCAAAACTCCTCCAAGAAAGATTCTCTTCAACACTTTGATGATCGATGA CATCCTCCACTGAATTCACATCCCTAGGGAAATCGATTACCAGCACTGGGCATGTACTTC GATGAATCCAAAATGCTCCCCGGCCTGTGTTAGTAGCAAAACTCCTCCAAGAAAGATTCT CTTCAACACTTTGATGATCGATGACATCCTCTACTGAGAATTCACATCTCTGGTGTTTTA GAGTAGTATCAAAGCTCCTCCAAGGAGCGAGTTTAACAATTATGCATCCCGCGACAAACT TGTTTGGTAACTCACACTTAAGGAATTTGATTTCTTTAACGATGCACTGTATCTCATGAG CCTAGTCTAACACACGACGATTCTCAACCATCATGTAGTCATGGAACTGCTTCATGGCAT ATATGTTGCCTCCAGCATCAGTTACGCCGAACTTAGTTTCTAGCGCATCTCGCATGTTCT TGGTAACCAGGTCCGGTTCAGGAATAATCGCTCCTTCAGGAGCACTACCAACGCTTAAAA TGCGTACCGTAAACGGGTTTTGTTTTAGTGTTGTAGCAAAGCCATGAATCGCAAATTGCC TACAAACCTTAGGTTTTTGGATTGATGGAAAAATTAGCAATTTCCCCGTTGAATTAATCC AGAAATAAATCATGATAATAACTTGTGCAGTATTAATTTTGTACTTATTTTTAACCATGT AAGCATGTTCTAATCATACAACGGATACATCTATGTAAATAGCAAATACGACCAACATAG GAATCAACAGGAAAGGGATGAACGGATTATACTCTCCAGTTGGCTAGGTCAAAAGCCACA ACGGTGGCAACAACATCCTCGGTAGCCTTCTTTGCGGTTTTAGAGTTCTCACCCATGTCG AAGTCGGAGAGGTTGAGGATGTAGTCGAAGTATAGGACGAAGACGAACAACATCGAGTAG TCACGTCGAAGACGCTCCCCAAAAACCTAATCGCCCTTCTTTTGGTGCAGGATCGCAAAA GACGGGGTTCTGGAGACCTGCTCTCCCGTACAGCCATGCATGTAGTTGACGGGATAGGAT CGCCGGAAGCAACGGTAGCGAGCGAAACAACGGCGGGTTGTGCGCGAGGAGGTAGAGCAG ATGCGATTTGATATGGGTCACGGCTAGGGTCGCCGATGCCTCCAATATATAGGCGGACGT GGTAGGGAGACTTGGGGTTGGACCAACGCCCGGGTCGGCAGCATCCCATGATGTGATATC TCGGATTTGTAGCGCATCGTTAGTGACTCGTAATTAATTTCCCATTAATTATCTGTTCCC AATTGGCTAAAATTAAGTGCACGCATGACATAGGTCTGAGCTCGGCTTGGCTCGCTCACG AAAAACAACGCGCGCTGGGGCGAGACATGGCATGACGAGGGGGGCGGAGGAGGAGCGCAT TGGAACCATTGGTCTTCTCAAGCTTCAATGGACATGCTATTGAAGGTTAAGAAGAGAAGT GGTTCCAGCGCGCTTTTTCGCCGCCACCTGCCATGCCACGTCTCGCGAGCGTGTCGTGTT TCATGAACGAGCTGAGCCGAGCTCGGACCTATGTCATGTGTGCGCTTAATTTTTGCCGGT CAGGAAAGAATAATTAATTACGAGTCATTATCGGACACGCTATGAATCCGAGACTTTGCA TCGTGGGTTGTTGCCGACTTGGGTGTGGGTCCAACCCCATAGTCTGCCTACCATGACTGC CTATATATTGGAGGCGTCAGCAACCCTAGTCGTCACCCAGACCGCATATGCTCTACCTCC TCGTGCACAACCCACTGTCGTTCCACTCCTACGGCTGCTTTCGCTGATCTCACCCCGTCA ACTGCGTGCACAGTTGTACGGGACAACATGCCTCCGAAACCCCGTCCTTTGCAATCTTGT ACCCGGAGAAGGGACAGTTAGGTTTTTGGGGAGCGTCTCAAACTCGATTGCTCGGCGTTA CTCGTCTTTGTCCTCTACTACATCCTCGACTTCCACATGTGTGAGAGCTCCGAAGCCAGA AAGAAGAAGGCTACCGAGCATGTTGCCGCGAGTTTGACCTGGTCAACTGGAGGGAACATC AGGCGCTTGCGAAAATTCTAGGAGGCGTTCACTTTGCGTGGGCGGCTGGAGCTACTGCAT AGTTATGGTTGAACAATTTAAGCACCTGTATTATGTATAGCTTCGTGAGCATTGGAAGGC AACCTTTGCAAATCACTGGGTTTGAAATTTCTTGGATGCTCAAGACTAATGTGTTGATGG TAGCATATCGAATGAAAGGTCATATGCCCCAATGCGATTTTGTAGTTTTGTTTCGACGTG GATGAATGTTGGCTAGTGTGTCAGTCGCTGAAATGGGTCCAGAACAAGAGGATGCGACAT GTAACACTGTTTTTTCAGTTATATGAGAATATACACCGGGCTATTTGTTTGCTGGATGCT TACTTCTGTTCATTAATGTTTGATGGCT
Protein Sequence (219 aa)
>BART1_0-u30598.012 219 150831_barley_pseudomolecules MLRHASVQSISGLLSNLRSHDQISSIFWLMHSDLHETKFSRAFECLSTMVACVEPEVVDS VYGEERRGDMSFLEHNYSKAKFHVRLKRRNGRVKHLHEELCVEGYDVKFVSATSVSMEVN QSLLPKVQFNLELSEKERSDRANVVLPFEHQGKGEPIRIYDGRRSLPEARQDLNFTTAAL LDETEALKSADTKGEIHYLRDSDDERPDSDEDPDDDLDI