- Transcript BART1_0-u30598.007
- Transcript IDBART1_0-u30598.007
- Gene IDBART1_0-u30598
Barley RTD
Exon Structure of BART1_0-u30598.007
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr4H | 1 | 574820351 | 574820285 | + |
| chr4H | 2 | 574820541 | 574820449 | + |
| chr4H | 3 | 574820930 | 574820755 | + |
| chr4H | 4 | 574821144 | 574821019 | + |
| chr4H | 5 | 574822272 | 574822203 | + |
| chr4H | 6 | 574822810 | 574822584 | + |
| chr4H | 7 | 574822997 | 574822908 | + |
| chr4H | 8 | 574823189 | 574823114 | + |
| chr4H | 9 | 574823585 | 574823332 | + |
| chr4H | 10 | 574829191 | 574828831 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 0.646573 | 0.0194387 | 2.04837 |
| morex | ETI | 0 | 0.0143029 | 0.00000000748767 |
| morex | LEA | 1.04797 | 1.69218 | 2.57343 |
| morex | EPI | 1.74388 | 0.0000000887927 | 1.16491 |
| morex | ROO | 1.07 | 0.14795 | 0.000146067 |
| morex | ROO2 | 0.63469 | 1.27504 | 2.30231 |
| morex | NOD | 0 | 0.307116 | 4.42255 |
| morex | RAC | 4.08174 | 4.08381 | 1.10276 |
| morex | INF1 | 1.56192 | 3.83283 | 3.11033 |
| morex | INF2 | 0 | 2.79593 | 1.40454 |
| morex | CAR5 | 0 | 0.00000662554 | 3.03147 |
| morex | CAR15 | 0.459236 | 0.243677 | 0 |
| morex | LEM | 0 | 2.41497 | 1.07558 |
| morex | LOD | 0.0651269 | 1.75556 | 1.46688 |
| morex | PAL | 0.00115011 | 1.42163 | 0.00000000544508 |
| morex | SEN | 0.939287 | 1.32806 | 0.0000220472 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os03g10460.1 | +1 | 2e-101 | 310 | 167/218 (77%) | protein|expressed protein |
| TAIR PP10 | AT2G18410 @ ARAPORT AT2G18410.1 @ TAIR |
+1 | 1e-42 | 155 | 87/204 (43%) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Histone acetylation protein 2 (InterPro:IPR019519); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr2:7990768-7992588 FORWARD LENGTH=374 |
| BRACH PP3 | Bradi1g71057.2.p | +1 | 2e-116 | 348 | 176/218 (81%) | pacid=32795801 transcript=Bradi1g71057.2 locus=Bradi1g71057 ID=Bradi1g71057.2.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (1540 bp)
>BART1_0-u30598.007 1540 150831_barley_pseudomolecules CGCGCGCCATGCTCCACGTCGCCGCCGCCGTCGCCTCCAACGCGGCCGCGGGGAAGGCGC AGGCCAGGGGACTTGTGGTTGTGGCGTTTGACCGGAGCCCGGAAGTTTACCTGGATGCCA TGCTTCGGCACGGCCTTGATTCGAATGCACTGAGTCGATGTGTTCGGATATTGGATTGCT ACTCAGACCCACTCGGGTGGAAGAAAAATATCCGAAGTCAGCAGCATCATGAGGACAGTG GAACACCGTGCTCATCAAACAAAGGCAACATCACAATTTTCAGAAGCGTGAAGGATGTTG ATAAGTTATCGTGCTCCATAATTGATCTTGGAAGAGGGTTTGAAGGAGAAGGCAAGACCT ATTTTTCTGTTGCTCTCGATTCAGTATGTACCTTGATGGAAACTTTTTTTCTTCCATGGA AACTGCAAAGCTTACTTGGGGCAGATTTTAATACAGTACTAAATTAGCTCTATGTTAAGG CATGCTTCAGTGCAATCAATTTCAGGCCTTCTTAGTAATCTTCGGAGCCATGATCAGATA TCATCAATCTTCTGGCTAATGCATTCAGATCTCCATGAAACCAAGTTTTCCCGAGCTTTT GAATGCCTTTCTACCATGGTTGCTTGTGTAGAGCCAGAAGTTGTAGATTCTGTATATGGA GAAGAACGTAGGGGGGACATGTCTTTCCTTGAGCATAACTATTCGAAAGCAAAGTTCCAT GTGCGCCTGAAACGAAGGAATGGACGGGTGAAGCATCTGCATGAGGAGTTATGTGTTGAG GGATATGATGTAAAATTTGTTTCTGCTACTTCTGTAAGTATGGAAGTGAACCAAAGTCTA CTACCTAAGGTTCAGTTCAATCTTGAGCTGTCAGAAAAGGAACGGAGTGACAGGGCAAAT GTTGTTCTTCCTTTCGAACATCAAGGAAAGGGCGAGCCAATCCGTATATATGATGGACGG CGATCTCTCCCGGAGGCTCGTCAAGATCTCAATTTTACTACGGCAGCTCTCCTGGATGAA ACAGAAGCTCTTAAATCTGCAGACACGAAGGGTGAAATTCATTACCTTCGTGATTCTGAT GATGAGCGACCTGACTCGGATGAAGACCCCGATGATGATTTGGATATTTAGCCACAATGT GAGCTCTGTTTATCCTAGTGGTCAGCTATCAAGTCAAAGGAACATCAGGCGCTTGCGAAA ATTCTAGGAGGCGTTCACTTTGCGTGGGCGGCTGGAGCTACTGCATAGTTATGGTTGAAC AATTTAAGCACCTGTATTATGTATAGCTTCGTGAGCATTGGAAGGCAACCTTTGCAAATC ACTGGGTTTGAAATTTCTTGGATGCTCAAGACTAATGTGTTGATGGTAGCATATCGAATG AAAGGTCATATGCCCCAATGCGATTTTGTAGTTTTGTTTCGACGTGGATGAATGTTGGCT AGTGTGTCAGTCGCTGAAATGGGTCCAGAACAAGAGGATGCGACATGTAACACTGTTTTT TCAGTTATATGAGAATATACACCGGGCTATTTGTTTGCTG
Protein Sequence (219 aa)
>BART1_0-u30598.007 219 150831_barley_pseudomolecules MLRHASVQSISGLLSNLRSHDQISSIFWLMHSDLHETKFSRAFECLSTMVACVEPEVVDS VYGEERRGDMSFLEHNYSKAKFHVRLKRRNGRVKHLHEELCVEGYDVKFVSATSVSMEVN QSLLPKVQFNLELSEKERSDRANVVLPFEHQGKGEPIRIYDGRRSLPEARQDLNFTTAAL LDETEALKSADTKGEIHYLRDSDDERPDSDEDPDDDLDI