- Transcript BART1_0-u30598.001
- Transcript IDBART1_0-u30598.001
- Gene IDBART1_0-u30598
Barley RTD
Exon Structure of BART1_0-u30598.001
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr4H | 1 | 574820351 | 574819324 | + |
| chr4H | 2 | 574820541 | 574820449 | + |
| chr4H | 3 | 574820930 | 574820755 | + |
| chr4H | 4 | 574821065 | 574821019 | + |
| chr4H | 5 | 574822272 | 574822203 | + |
| chr4H | 6 | 574822810 | 574822584 | + |
| chr4H | 7 | 574822997 | 574822908 | + |
| chr4H | 8 | 574823189 | 574823114 | + |
| chr4H | 9 | 574823585 | 574823332 | + |
| chr4H | 10 | 574830804 | 574828831 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 0 | 0 | 0 |
| morex | ETI | 0 | 0 | 0.0250451 |
| morex | LEA | 0 | 0 | 0 |
| morex | EPI | 0 | 0.060013 | 0 |
| morex | ROO | 0 | 0 | 0 |
| morex | ROO2 | 0 | 0.183221 | 0.0159589 |
| morex | NOD | 0 | 0 | 0 |
| morex | RAC | 0.0770969 | 0.115033 | 0.143861 |
| morex | INF1 | 0 | 0 | 0 |
| morex | INF2 | 0 | 0 | 0 |
| morex | CAR5 | 0 | 0.0458999 | 0 |
| morex | CAR15 | 0 | 0 | 0 |
| morex | LEM | 0 | 0 | 0 |
| morex | LOD | 0 | 0 | 0 |
| morex | PAL | 0 | 0 | 0 |
| morex | SEN | 0 | 0 | 0.0296582 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os03g10478.1 | -2 | 0.0 | 686 | 324/413 (78%) | protein|glycosyl hydrolase family 10 protein, putative, expressed |
| TAIR PP10 | AT4G33840 @ ARAPORT AT4G33840.1 @ TAIR |
-2 | 5e-143 | 447 | 212/408 (52%) | Symbols: | Glycosyl hydrolase family 10 protein | chr4:16223694-16226095 REVERSE LENGTH=576 |
| BRACH PP3 | Bradi1g71040.1.p | -2 | 0.0 | 667 | 315/413 (76%) | pacid=32792398 transcript=Bradi1g71040.1 locus=Bradi1g71040 ID=Bradi1g71040.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (4035 bp)
>BART1_0-u30598.001 4035 150831_barley_pseudomolecules CCCAAACACATAGCTTTCATGTGCCCCAATAAAGGAATTTCAATAAGCATCTGACAGTTG CCAAAAAAAAAAAAAAGAGGAACAACAGACAATTATGTCTGAAAAAAGACAGTTAGGAGC AAGTAGTTGCCCCTACGAGGATTCCATAACAGCTCAACCAAATTAACAGATACTAGTTCT CATGTGCTAAATAAAAGGGATTTCAGTGAATAACAGGCAATATACTATCACAAGTAAGCT AGAAAAGAATTTGCAGAAACAACATATACTAATCTTTATAGCAAGTCCGAGCAATCATGT CGATTCAAATGAATTATGTGATTGCAGGGATGCAACTGCAAGTAGCAATACGAAACTCAG TGCCATGGGAACAACAAGCCGTCTAGCAAATTTCTTGGCAAGCGGGGGCATCAATTAGGG GGGCAAACGGACAGGAACCACAGAGACGAAGAGAGATACTGTACCTCTGAGCCAGCGGCT GCCTGGCGGGGGCGCGAACCAGCGGGAGCCTCTCCCCCGCCGCCCTCGCGCACGCCTGCA TCTTCCCCGCTCTCCTCTTCTTCCCTCCTCTCGCCGCCGTCGCCGCCGCCGTCGCCGCCG CGCAGGAAACGAGCAGAGGAACCGGAGAAGCCGGGCTTAGAACAGGGAGGAGGAGTCAAA CGTATCCGACATGGAAAGGGGGAGGCCGCACTCCGAGTCTGCCTGACAGGTGGGACCCAC GCCGCTCCTGAGTCCCGACTTCCGGGAGCTCTGCGAAAGAGGCCAGAGGGGCTCTTGTGC AAAAGCTCCACCCTCTCGCGCTAGGGTTTAAGGTTCTGAGTCGGGAGGCGCCGCCGGCGA CGACGACGGGGAGCTGAGATGGCGGACGCGGCCGTGAGGTGCCTCCGGGACGGCCGCCTC GACGGCGAGCACGCGCCAGCGCTGGCCGTGGAGGGCTCCCTCCAGTGCTGCCCCCTCGCG GCGCGCGCCATGCTCCACGTCGCCGCCGCCGTCGCCTCCAACGCGGCCGCGGGGAAGGCG CAGGCCAGGGGACTTGTGGTTGTGGCGTTTGACCGGAGCCCGGAAGTTTACCTGGATGCC ATGCTTCGGCACGGCCTTGATTCGAATGCACTGAGTCGATGTGTTCGGATATTGGATTGC TACTCAGACCCACTCGGGTGGAAGAAAAATATCCGAAGTCAGCAGCATCATGAGGACAGT GGAACACCGTGCTCATCAAACAAAGGCAACATCACAATTTTCAGAAGCGTGAAGGATGTT GATAAGTTATCGTGCTCCATAATTGATCTTGGAAGAGGGTTTGAAGGAGAAGGCAAGACC TATTTTTCTGTTGCTCTCGATTCAATTAGCTCTATGTTAAGGCATGCTTCAGTGCAATCA ATTTCAGGCCTTCTTAGTAATCTTCGGAGCCATGATCAGATATCATCAATCTTCTGGCTA ATGCATTCAGATCTCCATGAAACCAAGTTTTCCCGAGCTTTTGAATGCCTTTCTACCATG GTTGCTTGTGTAGAGCCAGAAGTTGTAGATTCTGTATATGGAGAAGAACGTAGGGGGGAC ATGTCTTTCCTTGAGCATAACTATTCGAAAGCAAAGTTCCATGTGCGCCTGAAACGAAGG AATGGACGGGTGAAGCATCTGCATGAGGAGTTATGTGTTGAGGGATATGATGTAAAATTT GTTTCTGCTACTTCTGTAAGTATGGAAGTGAACCAAAGTCTACTACCTAAGGTTCAGTTC AATCTTGAGCTGTCAGAAAAGGAACGGAGTGACAGGGCAAATGTTGTTCTTCCTTTCGAA CATCAAGGAAAGGGCGAGCCAATCCGTATATATGATGGACGGCGATCTCTCCCGGAGGCT CGTCAAGATCTCAATTTTACTACGGCAGCTCTCCTGGATGAAACAGAAGCTCTTAAATCT GCAGACACGAAGGGTGAAATTCATTACCTTCGTGATTCTGATGATGAGCGACCTGACTCG GATGAAGACCCCGATGATGATTTGGATATTTAGCCACAATGTGAGCTCTGTTTATCCTAG TGGTCAGCTATCAAGTCAAAGGAACATCAGGCGCTTGCGAAAATTCTAGGAGGCGTTCAC TTTGCGTGGGCGGCTGGAGCTACTGCATAGTTATGGTTGAACAATTTAAGCACCTGTATT ATGTATAGCTTCGTGAGCATTGGAAGGCAACCTTTGCAAATCACTGGGTTTGAAATTTCT TGGATGCTCAAGACTAATGTGTTGATGGTAGCATATCGAATGAAAGGTCATATGCCCCAA TGCGATTTTGTAGTTTTGTTTCGACGTGGATGAATGTTGGCTAGTGTGTCAGTCGCTGAA ATGGGTCCAGAACAAGAGGATGCGACATGTAACACTGTTTTTTCAGTTATATGAGAATAT ACACCGGGCTATTTGTTTGCTGGATGCTTACTTCTGTTCATTAATGTTTGATGGCTAGTA GTAACTGATTGTTCAGCCTTTGGTGAATTTCCATTAACTAAACCAGCGTTAAACGCGTGA CATGCTTCATTTTACTGTCGTATAGAGGATGGCAGAAATGACATGCAAACTTGTACTGTA TATTAAGAAGAACAAATAGAACTTCTTCATTCATAATTTATAAATTGAACATATGATCCA TCGCCTCTCCAGGACTGAGAACTCAATCTCATGGGCGGGCGCCAATGAAATCCCAACAAC AATGCTCTAAATCAACAACAATCAATGGCAGGCATATCTGAAATCACCGTATGGGCGCTA GCTAGACGCCTATGCATGCTAGTACCAGTATTAGACTAGACGTGTATGGTGTACTCGTCG TCGGACTCCCTGTGGACGCTGAGGCTCTGCACGACGGTGGAGTTGGCCGCCGCCGCCGGG TGGGTGACGGTGACATTGTAGTCCCCGTGGAACAGCTCGGCATCGTAGTGCCCGTCGGCG TCGGCCACGCCGACGTGCGAGCTCGTCTTCCACTCGGCGATGAGCTTGTCGACCGTGTCG CCGACGGGGAGGTTGTTGAAGTTGTCGTCGGTGAGGCACATGACGTAGCAGCCCTGCGGG TGCCACGCCGTCCAGAGCACGATGCCGTGCACGGCCGGGTGCGAGTACACCTCCCTGAGC ACCTGCTCCAGGTGGTGCGCCTGGTCCGGCCCCGGCTTCACGTCGATCTCCGTGAGCCAG ATGGGCACGCCGGCCTGCGACAGGGTGTCGAGCGCCGCCCGGACGTAGGGGATGTTGGGC GTGGCGCCGAAGTGGCCCTCGAGGCCGATGGCCATCCGGACGCCGACGCCGTTGCCGGGG AAGGCGTCCTTGATCTGCGACAGCTTGCTGAGGTACTTGCTGGGGAGGCCGCTCTGGTCG GCGGGCTGCTCCAGCGTGTTGAAGTCGTTCATGGACATGAGCGCGCCGCCGTCCATGCCG TGCGCCTTCTGGTAGAAGGCCGCCGACGCGCCCGCCCCGAACTTGTCCTCGAAGTAGTCG AAGTGCAGGTTCTCGTTCACCACGTCCCACGCGATCACCTTGCCGGCGTACCGCGACATG ACCGACTTCATCCGGTGGGCGGTGGCGGCGCGGAGCTGGTCGCAGCTCAGGGCCTTGACC CACCCCAGCTGCGTGCTGGGGTCGTCCCAGAACACGTTGTGCCCGCGCACCGCGATGCCG TGGGCGCGCGCGAACCGGAGCATCGCGTCGGGCACGGAGTAGTCCTCGTGCCCCTGCGTC CACTCCGTGCTGTACCACTTCATCTCGTTCTCGAAGGTGGTCACCGTGAACCGCTTGGCG AACCACTGCTGGTATTTCTCGTTGTTGATGATCTCGTGGCTCATCGCCGACCCCAGCGGG AAGCCGCTCCGGACCTGCCGGATGTGCACCCGCGCGCCCGGCACCGGGTTGCCGGCCGCG TCCCTGGCGCGGAGCCGCACAGTCCTCTTCCGGGCCTGCTTGACGGCCGCGTGCCGGTGG GAGCTCCACTCCTCCTTGCTGAACGGCTGCAGCGACACGTTGTCCACCCACATGTCCGCC GTCGTGTTGCTCTGT
Protein Sequence (405 aa)
>BART1_0-u30598.001 405 150831_barley_pseudomolecules MWVDNVSLQPFSKEEWSSHRHAAVKQARKRTVRLRARDAAGNPVPGARVHIRQVRSGFPL GSAMSHEIINNEKYQQWFAKRFTVTTFENEMKWYSTEWTQGHEDYSVPDAMLRFARAHGI AVRGHNVFWDDPSTQLGWVKALSCDQLRAATAHRMKSVMSRYAGKVIAWDVVNENLHFDY FEDKFGAGASAAFYQKAHGMDGGALMSMNDFNTLEQPADQSGLPSKYLSKLSQIKDAFPG NGVGVRMAIGLEGHFGATPNIPYVRAALDTLSQAGVPIWLTEIDVKPGPDQAHHLEQVLR EVYSHPAVHGIVLWTAWHPQGCYVMCLTDDNFNNLPVGDTVDKLIAEWKTSSHVGVADAD GHYDAELFHGDYNVTVTHPAAAANSTVVQSLSVHRESDDEYTIHV