- Transcript BART1_0-u30148.001
- Transcript IDBART1_0-u30148.001
- Gene IDBART1_0-u30148
Barley RTD
Exon Structure of BART1_0-u30148.001
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr4H | 1 | 534645025 | 534644199 | - |
| chr4H | 2 | 534645366 | 534645291 | - |
| chr4H | 3 | 534645936 | 534645868 | - |
| chr4H | 4 | 534646135 | 534646038 | - |
| chr4H | 5 | 534646858 | 534646729 | - |
| chr4H | 6 | 534647659 | 534647368 | - |
| chr4H | 7 | 534647959 | 534647750 | - |
| chr4H | 8 | 534648157 | 534648043 | - |
| chr4H | 9 | 534648527 | 534648422 | - |
| chr4H | 10 | 534648750 | 534648637 | - |
| chr4H | 11 | 534649193 | 534648845 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 53.8771 | 32.8503 | 31.3153 |
| morex | ETI | 31.9804 | 37.6744 | 32.9205 |
| morex | LEA | 15.9999 | 8.14321 | 28.5923 |
| morex | EPI | 31.4032 | 37.0934 | 35.1968 |
| morex | ROO | 30.751 | 26.098 | 9.56008 |
| morex | ROO2 | 76.8364 | 73.4345 | 71.9061 |
| morex | NOD | 43.408 | 57.8211 | 52.1822 |
| morex | RAC | 43.1666 | 44.4005 | 53.9813 |
| morex | INF1 | 22.3633 | 51.922 | 37.4316 |
| morex | INF2 | 18.0725 | 29.3425 | 19.6789 |
| morex | CAR5 | 20.6749 | 19.853 | 25.0915 |
| morex | CAR15 | 1.85341 | 5.75014 | 3.83162 |
| morex | LEM | 44.8743 | 36.7499 | 46.5648 |
| morex | LOD | 57.951 | 59.9659 | 66.2833 |
| morex | PAL | 37.4119 | 41.822 | 52.8595 |
| morex | SEN | 29.1726 | 38.1399 | 29.3956 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os03g13970.2 | +2 | 1e-177 | 516 | 359/407 (88%) | protein|26S proteasome non-ATPase regulatory subunit 4, putative, expressed |
| TAIR PP10 | AT4G38630 @ ARAPORT AT4G38630.1 @ TAIR |
+2 | 2e-111 | 344 | 184/242 (76%) | Symbols: RPN10, MCB1, ATMCB1, MBP1 | regulatory particle non-ATPase 10 | chr4:18057357-18059459 REVERSE LENGTH=386 |
| BRACH PP3 | Bradi1g68290.1.p | +2 | 0.0 | 533 | 367/407 (90%) | pacid=32803746 transcript=Bradi1g68290.1 locus=Bradi1g68290 ID=Bradi1g68290.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (2386 bp)
>BART1_0-u30148.001 2386 150831_barley_pseudomolecules CTGTGAGAAGCCTCGACACCGCTTCGCACAAAACGGCAAATAGGATTTTCCAGTCAGGAC GGTACTGGCAAACAAAATCGAGACTAGACCCATGGTGACTTTCTTTTATGGGTCTACAAA TCAGGCCCAACAGGTCAGAAAGCAGTCCGGTTCCACCGCGGGCCGGACCGAGGCGTACCA AGTCTCGAATCGGTTTCCTCCACAGAAAGCAATCCACGTCCACCAAGGCGACGCCGCAAA TAAGAACTCCAGCCCTCTCCTCCCCCTTGGATCAGTTTGTTCCCCTTGTTCCCCAACCCG AACCCTCGACTGCAGCGCGACCCACAGCGGCGCAACCATGGTGCTCGAGTCGACGATGAT CTGCATAGACAACTCGGAGTGGATGCGGAACGGCGACTACTCGCCGTCCCGCTTCCAGGC GCAGGCCGACGCCGTCAACCTCATCTGCGGCGCCAAGACCCAGTCGAACCCGGAGAATAC GGTGGGCGTCATGACGATGGCCGGCAAGGGCGTGCGCGTGCTTGTCACCCCCACCAGCGA CCTCGGCAAGATCCTCGCCTGTATGCACGGGCTGGAAGTTGGAGCTGAAGCAAACTTGGC TGCAGCTATTCAGGTTGCTCAGCTGGCTCTCAAGCATCGCCAGAATAAGAGGCAACAACA GAGAATTATTGTTTTCATTGGAAGCCCTGTGAAATACGACAAGAAAGTTTTGGAGACAAT AGGGAAGAAGCTGAAGAAGAATAATGTTGCCCTTGACGTTGTTGATTTTGGTGAAACTGA TGATGAAAAGCCTGAGAAACTGGAAGCGCTGATCGCTGCTGTGAACAGCAGTGATAGCAG CCACATTGTCCATGTCCCTCCGGGTGATCATGCCCTTTCTGATGTTCTTATAAGCACTCC TATCTTCACCGGTGAAGAAGGTGGAAGTGGCTTTGCTGCTTCTGCAGCTGCTGCTGCAGC CACTGGAGCTACTGGGTATGATTTTGGCGTGGACCCAAATGTGGATCCAGAGTTGGCACT TGCCCTACGGTTGTCTATGGAGGAAGAGCGAGCTAGGCAAGAGGCTATCGCGAAAAAAGC TGCAGAAGACAACAAGGATCAGGCCTCAAGCTCTACTGATGCTATTATGGCTGAAGCGGA ACTTACCTTAAATGCTCCTGCTGATGTTGACGCAGATCTACTGAAGGATGATGATGATGC TCAGCTATTACAGCAAGCACTTGCTATGTCAATGGATGAGGGAGCTTCAGGAGCTGCAGC CGTGGCTGATGCTGCTATGGCAGAAGCTGCTGCAGATGACCAGGATTTGGCATTGGCTCT TCAAATGTCTGTTCAGGACGCAGAGGCGTCTGGTCAATCTGATATGAGCAAAGTGTTTGA AGACAGATCATTTGTGACATCCATCCTTAATTCGCTTCCTGGTGTTGACCCCAATGACCC ATCTGTGAAAGATCTACTGGCATCTTTGCATGGCCAAGGAGAGCAGGAGAAGAAAGATGA GGCGGACAAGACAGACAAGCCTGAAGATGGGAAGAACTAAAGTCCCTTTGTTGCTTCATG CACATGAAGAAGGGAAGAAGATTGCCTGCATTAGCTGCTTTTACACTTGGGCTATGAATT TACTTGATCCTCTTGTAACTGCGTTGACGATAACTCAAATGCCGAGAGAATTTGTATTAT GTCTGCTCTCACGAACGCTCCTCCATGTTTGTCTTAAGTGATTACATGTTGCAAATTTTT TGTACACTTATGTTTGTTGAAGGTGAAACTGATAAGTTGACAGCGTGCTGCGAGTATTGT TGAAATAGGGCATATCTGCACCACTATCGTAGCATGGGACATACACATATTAGAATATCT ACAACCAGAACGTCATGCCTGTGTCCAGTCTCTCGTCTGCAAACCCCTGAATCCTTCAAA AGGATTCTATGTACATAAGAAAGGACGGATCACCTGCCGATCTTTTACAAAACTATGCCA GAAAGGATATACACAGCTTTACTGATTATGTTCTGACCATTAGCAACCACAACCACTATG GGAATGAAGCAAGTAAAATGATCAATATGTAAAATCCAAGTAAGTTATTATGGTGATTTG TGTTTAAACATTTAAAAGTCTGTAAGAACTACTTCCTTCATTTCTAAATATAAGTCTTTT TAAAGATTTCATTAGTAGATTACATATGAAGCAAAATAAGTAAATCTATACTTTAAAATA TATTTATATACATTTGTATGTAGTTTTATAATGGAACTATTAAAAAAACTCGTGTTTGAA AACAGAGGGAGTACATTAAATGAAGGGAGTCTAAAACTTTTAACACTATGAATTAAGTAG TATAAATTGTCATATTGTAGGTGAATTCAACAATAGTATACCCCCG
Protein Sequence (482 aa)
>BART1_0-u30148.001 482 150831_barley_pseudomolecules MVTFFYGSTNQAQQVRKQSGSTAGRTEAYQVSNRFPPQKAIHVHQGDAANKNSSPLLPLG SVCSPCSPTRTLDCSATHSGATMVLESTMICIDNSEWMRNGDYSPSRFQAQADAVNLICG AKTQSNPENTVGVMTMAGKGVRVLVTPTSDLGKILACMHGLEVGAEANLAAAIQVAQLAL KHRQNKRQQQRIIVFIGSPVKYDKKVLETIGKKLKKNNVALDVVDFGETDDEKPEKLEAL IAAVNSSDSSHIVHVPPGDHALSDVLISTPIFTGEEGGSGFAASAAAAAATGATGYDFGV DPNVDPELALALRLSMEEERARQEAIAKKAAEDNKDQASSSTDAIMAEAELTLNAPADVD ADLLKDDDDAQLLQQALAMSMDEGASGAAAVADAAMAEAAADDQDLALALQMSVQDAEAS GQSDMSKVFEDRSFVTSILNSLPGVDPNDPSVKDLLASLHGQGEQEKKDEADKTDKPEDG KN