- Gene BART1_0-u30148
- Gene IDBART1_0-u30148
- Location chr4H: 534644199 - 534649193
Matching HORVU genes
BarleyRTD transcripts were compared to the location of the IBSC 2017 Predicted Transcripts. Overlapping status is classified as Containing (HORVU is smaller than the BART), Contained (BART is smaller than the HORVU), Partial-Overlap (Overlap exists), and Undefined (the BART transcript has no overlapping HORVU).HORVU ID | Percentage overlap | BART Gene Direction | HORVU Gene Direction | Overlap Length | Gene Length Difference | Overlapping Status |
---|---|---|---|---|---|---|
HORVU4Hr1G063820 | 84.6 | - | - | 4225 | -770 | Containing |
Transcripts from Gene BART1_0-u30148
Transcript | Length(bp) | Description |
---|---|---|
BART1_0-u30148.001 | 2386 | 2386 bp MSTRG.30148.1 MSTRG.30148 |
BART1_0-u30148.002 | 2383 | 2383 bp MSTRG.30148.2 MSTRG.30148 |
BART1_0-u30148.003 | 1899 | 1899 bp MSTRG.30148.3 MSTRG.30148 |
BART1_0-u30148.004 | 1920 | 1920 bp MSTRG.30148.4 MSTRG.30148 |
BART1_0-u30148.005 | 1973 | 1973 bp MSTRG.30148.5 MSTRG.30148 |
BART1_0-u30148.006 | 1781 | 1781 bp MSTRG.30148.6 MSTRG.30148 |
BART1_0-u30148.007 | 1582 | 1582 bp MSTRG.30148.7 MSTRG.30148 |
Exon Structure of BART1_0-u30148
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-30)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|---|---|---|---|---|---|
Rice PP7 | LOC_Os03g13970.2 | +2 | 1e-177 | 516 | 359/407 (88%) | protein|26S proteasome non-ATPase regulatory subunit 4, putative, expressed |
TAIR PP10 | AT4G38630 @ ARAPORT AT4G38630.1 @ TAIR |
+2 | 2e-111 | 344 | 184/242 (76%) | Symbols: RPN10, MCB1, ATMCB1, MBP1 | regulatory particle non-ATPase 10 | chr4:18057357-18059459 REVERSE LENGTH=386 |
BRACH PP3 | Bradi1g68290.1.p | +2 | 0.0 | 533 | 367/407 (90%) | pacid=32803746 transcript=Bradi1g68290.1 locus=Bradi1g68290 ID=Bradi1g68290.1.v3.1 annot-version=v3.1 |
GO Annotation
Generated by PANNZERGO ID | GO terms |
---|---|
GO:0009651 | response to salt stress |
GO:0009555 | pollen development |
GO:0000413 | protein peptidyl-prolyl isomerization |
GO:0043248 | proteasome assembly |
GO:0009735 | response to cytokinin |
GO:0009733 | response to auxin |
GO:0004559 | alpha-mannosidase activity |
GO:0009408 | response to heat |
GO:0015629 | actin cytoskeleton |
GO:0005829 | cytosol |
GO:0030246 | carbohydrate binding |
GO:0051788 | response to misfolded protein |
GO:0031593 | polyubiquitin modification-dependent protein binding |
GO:0010150 | leaf senescence |
GO:0030042 | actin filament depolymerization |
GO:0006013 | mannose metabolic process |
GO:0048767 | root hair elongation |
GO:0000502 | proteasome complex |
GO:0006952 | defense response |
GO:0006974 | cellular response to DNA damage stimulus |
GO:0048528 | post-embryonic root development |
GO:0009744 | response to sucrose |
GO:0001653 | peptide receptor activity |
GO:0005634 | nucleus |
GO:0043161 | proteasome-mediated ubiquitin-dependent protein catabolic process |
GO:0003755 | peptidyl-prolyl cis-trans isomerase activity |
GO:0009737 | response to abscisic acid |
GO:0003779 | actin binding |
GO:0048455 | stamen formation |
GO:0016020 | membrane |
GO:0010029 | regulation of seed germination |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons