Matching HORVU genes

BarleyRTD transcripts were compared to the location of the IBSC 2017 Predicted Transcripts. Overlapping status is classified as Containing (HORVU is smaller than the BART), Contained (BART is smaller than the HORVU), Partial-Overlap (Overlap exists), and Undefined (the BART transcript has no overlapping HORVU).

HORVU IDPercentage overlapBART Gene DirectionHORVU Gene DirectionOverlap LengthGene Length DifferenceOverlapping Status
HORVU4Hr1G06382084.6--4225-770Containing




Transcripts from Gene BART1_0-u30148

TranscriptLength(bp)Description
BART1_0-u30148.00123862386 bp MSTRG.30148.1 MSTRG.30148
BART1_0-u30148.00223832383 bp MSTRG.30148.2 MSTRG.30148
BART1_0-u30148.00318991899 bp MSTRG.30148.3 MSTRG.30148
BART1_0-u30148.00419201920 bp MSTRG.30148.4 MSTRG.30148
BART1_0-u30148.00519731973 bp MSTRG.30148.5 MSTRG.30148
BART1_0-u30148.00617811781 bp MSTRG.30148.6 MSTRG.30148
BART1_0-u30148.00715821582 bp MSTRG.30148.7 MSTRG.30148



Exon Structure of BART1_0-u30148


grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-30)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP7 LOC_Os03g13970.2 +2 1e-177 516 359/407 (88%) protein|26S proteasome non-ATPase regulatory subunit 4, putative, expressed
TAIR PP10 AT4G38630 @ ARAPORT
AT4G38630.1 @ TAIR
+2 2e-111 344 184/242 (76%) Symbols: RPN10, MCB1, ATMCB1, MBP1 | regulatory particle non-ATPase 10 | chr4:18057357-18059459 REVERSE LENGTH=386
BRACH PP3 Bradi1g68290.1.p +2 0.0 533 367/407 (90%) pacid=32803746 transcript=Bradi1g68290.1 locus=Bradi1g68290 ID=Bradi1g68290.1.v3.1 annot-version=v3.1




GO Annotation

Generated by PANNZER

GO IDGO terms
GO:0009651response to salt stress
GO:0009555pollen development
GO:0000413protein peptidyl-prolyl isomerization
GO:0043248proteasome assembly
GO:0009735response to cytokinin
GO:0009733response to auxin
GO:0004559alpha-mannosidase activity
GO:0009408response to heat
GO:0015629actin cytoskeleton
GO:0005829cytosol
GO:0030246carbohydrate binding
GO:0051788response to misfolded protein
GO:0031593polyubiquitin modification-dependent protein binding
GO:0010150leaf senescence
GO:0030042actin filament depolymerization
GO:0006013mannose metabolic process
GO:0048767root hair elongation
GO:0000502proteasome complex
GO:0006952defense response
GO:0006974cellular response to DNA damage stimulus
GO:0048528post-embryonic root development
GO:0009744response to sucrose
GO:0001653peptide receptor activity
GO:0005634nucleus
GO:0043161proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0003755peptidyl-prolyl cis-trans isomerase activity
GO:0009737response to abscisic acid
GO:0003779actin binding
GO:0048455stamen formation
GO:0016020membrane
GO:0010029regulation of seed germination



Barley PseudoMolecules GBrowse

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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons