Matching HORVU genes

BarleyRTD transcripts were compared to the location of the IBSC 2017 Predicted Transcripts. Overlapping status is classified as Containing (HORVU is smaller than the BART), Contained (BART is smaller than the HORVU), Partial-Overlap (Overlap exists), and Undefined (the BART transcript has no overlapping HORVU).

HORVU ID	Percentage overlap	BART Gene Direction	HORVU Gene Direction	Overlap Length	Gene Length Difference	Overlapping Status
HORVU4Hr1G063820	84.6	-	-	4225	-770	Containing

Transcripts from Gene BART1_0-u30148

Transcript	Length(bp)	Description
BART1_0-u30148.001	2386	2386 bp MSTRG.30148.1 MSTRG.30148
BART1_0-u30148.002	2383	2383 bp MSTRG.30148.2 MSTRG.30148
BART1_0-u30148.003	1899	1899 bp MSTRG.30148.3 MSTRG.30148
BART1_0-u30148.004	1920	1920 bp MSTRG.30148.4 MSTRG.30148
BART1_0-u30148.005	1973	1973 bp MSTRG.30148.5 MSTRG.30148
BART1_0-u30148.006	1781	1781 bp MSTRG.30148.6 MSTRG.30148
BART1_0-u30148.007	1582	1582 bp MSTRG.30148.7 MSTRG.30148

Exon Structure of BART1_0-u30148

grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons

Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-30)

Database	Hit	Frame	E-value	Score	% Identity	Description
Rice PP7	LOC_Os03g13970.2	+2	1e-177	516	359/407 (88%)	protein|26S proteasome non-ATPase regulatory subunit 4, putative, expressed
TAIR PP10	AT4G38630 @ ARAPORT AT4G38630.1 @ TAIR	+2	2e-111	344	184/242 (76%)	Symbols: RPN10, MCB1, ATMCB1, MBP1 | regulatory particle non-ATPase 10 | chr4:18057357-18059459 REVERSE LENGTH=386
BRACH PP3	Bradi1g68290.1.p	+2	0.0	533	367/407 (90%)	pacid=32803746 transcript=Bradi1g68290.1 locus=Bradi1g68290 ID=Bradi1g68290.1.v3.1 annot-version=v3.1

GO Annotation

Generated by PANNZER

GO ID	GO terms
GO:0009651	response to salt stress
GO:0009555	pollen development
GO:0000413	protein peptidyl-prolyl isomerization
GO:0043248	proteasome assembly
GO:0009735	response to cytokinin
GO:0009733	response to auxin
GO:0004559	alpha-mannosidase activity
GO:0009408	response to heat
GO:0015629	actin cytoskeleton
GO:0005829	cytosol
GO:0030246	carbohydrate binding
GO:0051788	response to misfolded protein
GO:0031593	polyubiquitin modification-dependent protein binding
GO:0010150	leaf senescence
GO:0030042	actin filament depolymerization
GO:0006013	mannose metabolic process
GO:0048767	root hair elongation
GO:0000502	proteasome complex
GO:0006952	defense response
GO:0006974	cellular response to DNA damage stimulus
GO:0048528	post-embryonic root development
GO:0009744	response to sucrose
GO:0001653	peptide receptor activity
GO:0005634	nucleus
GO:0043161	proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0003755	peptidyl-prolyl cis-trans isomerase activity
GO:0009737	response to abscisic acid
GO:0003779	actin binding
GO:0048455	stamen formation
GO:0016020	membrane
GO:0010029	regulation of seed germination

Barley PseudoMolecules GBrowse

Click here to see more tracks within GBrowse -->

grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons