- Transcript BART1_0-u29974.003
- Transcript IDBART1_0-u29974.003
- Gene IDBART1_0-u29974
Barley RTD
Exon Structure of BART1_0-u29974.003
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr4H | 1 | 511456072 | 511455807 | + |
| chr4H | 2 | 511457260 | 511457229 | + |
| chr4H | 3 | 511457495 | 511457384 | + |
| chr4H | 4 | 511457741 | 511457592 | + |
| chr4H | 5 | 511457957 | 511457876 | + |
| chr4H | 6 | 511458147 | 511458084 | + |
| chr4H | 7 | 511461387 | 511458273 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 4.63771 | 0.845765 | 2.41034 |
| morex | ETI | 1.05353 | 1.56522 | 6.29261 |
| morex | LEA | 0.935152 | 0.720023 | 0.552204 |
| morex | EPI | 6.32306 | 0.726254 | 0.322819 |
| morex | ROO | 0.0000144564 | 0.217988 | 0.165013 |
| morex | ROO2 | 3.56981 | 4.63707 | 3.94562 |
| morex | NOD | 0.358821 | 0.085567 | 0.0000000251537 |
| morex | RAC | 4.45004 | 4.95446 | 5.3453 |
| morex | INF1 | 4.02558 | 1.71567 | 9.65003 |
| morex | INF2 | 1.62761 | 2.58583 | 2.12888 |
| morex | CAR5 | 0.44435 | 1.44616 | 0 |
| morex | CAR15 | 0.0846345 | 0 | 0 |
| morex | LEM | 0.170301 | 0.0732733 | 0.0418595 |
| morex | LOD | 12.2578 | 20.0345 | 11.3699 |
| morex | PAL | 0 | 0 | 0.365226 |
| morex | SEN | 0.900568 | 1.10961 | 1.13285 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os03g15880.4 | -1 | 0.0 | 427 | 221/260 (85%) | protein|coronatine-insensitive protein, putative, expressed |
| TAIR PP10 | AT2G39940 @ ARAPORT AT2G39940.1 @ TAIR |
-1 | 2e-130 | 326 | 169/262 (65%) | Symbols: COI1 | RNI-like superfamily protein | chr2:16672848-16675486 REVERSE LENGTH=592 |
| BRACH PP3 | Bradi1g67160.1.p | -1 | 0.0 | 466 | 239/260 (92%) | pacid=32806713 transcript=Bradi1g67160.1 locus=Bradi1g67160 ID=Bradi1g67160.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (3821 bp)
>BART1_0-u29974.003 3821 150831_barley_pseudomolecules CGGATGGCAGAAAGAGATGCCAAGTGTTGAAGCGTAAGGTGGTGCCGTGCGGTGCGTACA CTAAGCCGATTCAACCGGATTTGAGAAAGTCTCGCGTCCGGCCCTCTCCAGAACCTTCCG GCAGGTCCTCTCTATTTATTCACACGAGCGCGCGTGCACCATCCAACGGGAAAAGAGAGG CGGTGGTCGCAGGTCGGAACTGACGGAGGCAGAGGCGAAGACGAAGACAGAGACTCGAGA GGCCTCGCAGCGGCGACGAATCAAAGATGTCGTATTCGAGGTACAGGAGTCGTTCAAGGA GTGTGGACTCGAGTGATGTTGAGAACCCTGGGAACAATCTCTTTGTGACTGGTTTATCAT CTCGTCTAACTGATCGAGATCTGGAGAAGCATTTCTCTACAGAGGGAGAGGTGATTGATG CAAGTATTGTACTTGATCCATGGACAAGGGAATCACGGGGATTTGGATTTGTTACCATGG CCAATCTTAAGGAGGCAGAACGCTGCATCAAATATCTCGACAGTTCAGTGCTGGAAGGTC GTGTCATTACTGTTGAGAAGCAGGTTGATGCCCGCAGCTGTATGGCATCAAATTCAAAAG ATACACAACCTAAGATCGAAACAATGCTACCTCAACCAAAGGGCAAAGAGAAGACGAGGT CGAACCCCAACACCGGGAAGGTACCTTGGCAGCAAATCATCGCGTCGAAGGAGGTATTCC CGAAGCAGGTCACCTGTTAGGAGAGACCGTTACGGCTCACGCTACCCGCCCGAGCTAGAA CGTTCTTATTCTCCTTATCGCAGAGGACGATCATACTCTCGTCATGACAGGCATAGATCA TACTCCCCCTATGGAAGGAGGCCATCCTACTCCCCCTATGAAAGGAGGCCATCCTACTCT CCCTATGGCAGAAGGAGATCATACTCTCCTTCCGACAGGTCGGAGTCTCCCTACCACAGG CGTAGATCCTACTCACCCTACGACAGGCGTCACTCACCCCGCTATGGTCATCGCCACCGT TCAAGATCCCCATACAGTTACAGAAGGCGGAGGTCATGCTCCCATGACCGTTATGTTTCA GCATACTACAGCAGGCGCTATTCTCCAAGGAACAGAAGACGGAGTTACTCTCGCAGCGTA TCACCACGCAGGAGCTACTCCCGTAGCTGCTCCCTGGCGTCAGAAGAATCAAGGAGCTGT TCTCCGCAGAAAGGATATGCTGAAAGCAAGGCATCGCGCAGCAGGTCACCTGCGATTGCG AAGAGGCGTTCTAGAGAAAGCTATGCGCACAGCCGCAGTTCATGCTCGAGGTCCGTCTCC AGGGAGCGCTCAACCTCATCAAGCACCTGATGGTTTACAAAGTGCCTTGATGACTTTGGA TGTTTGTAAACAATGTGGATGGTATGATCGTGTACCTAGTGAAGCAGCTGTATTTCGTCA TCGTTAACATCTTAAATTGCAGTCTGCTTCCATACTATAGGAGAAAAATGCAGAAAATTT CCTACAGATTGCCTATTCCACAAGGATTTTATAGCATACTTCTACAACGGAAAAAACGCA GAAATTTTCATAAATATTGGCGAGGTCATTTCTTTGTTTCAGATGACCCAGTGCGGATTT TTCTATAGGAATTCGATACTGCAATTTTCCTTTGTTTATAAGATCTCTAACTCAAACCTC ATTTTATTATTCTTTGACAAGTTGAATACACTTTCACTGTATTTACCCTCTCCTCAATCC TCTAAAGTTGCTTCCTGTGCAAAAGCATATCTTTCTCTACCTTCTCCTCTGTCCTCTCTT AAATTCCTTCCTGGCAAAACCTTACATATCAGAATCTCTGTGTTCTGTAGACTTTCACGA TAAGTATTTTGAAATCATGTAAAATTTCACAGCAAGTGACATCTCAATGCAAAAAAGAAA AGGTCACCACTCGATAGTACCAGATAACTTCACACGCCTATAACAACCAGTTCACCATAC AGAGCCACAGATTAAGAGAAGCCGGATAATTGCGACCAGAAAAACTGAGGCCAAGCCACA GCAAAATATCAAGATAGTCATAACATTGCGCAGAGAGGTTTACAGATGGTACAACAACTA AAGGAATACTGTTCGTAGAACAACAATACAGTGGGCAAAGGTTCAAGAACAGAAAAATGC CATTACAACTGGGCACATTATTAGAAAATGTGTGTCCGAGCCTTGTCAAAATGGGTGTAG TACACAGAGATATCCATGTTGGCCAGATGAGCAGCTTACCCAGGAATGTTGCCCCTCAAA TACGAAGACAATTCAGAGGGGGTCGCTTTTAGTCGAGCTTTCAGTTCCATAATGGCACTG TGGGATGGAATGTCCCTATGTGCCGTATTGTGGGTTTTGCTGGCATCAAACATGTATGTA CAGTCAAACTGATGGTCTTTTTAGCTTCCGACTGACGGATAGAGGGGAATTACTGACATG GGACAATCTGTCCTTGCCCCAGCTAGAGAGTAGTACGCCAGAACCTGTGCCTGACCCTCT GGGCAAGGCTCACTTTGATTTGGCGCAATAAACTCAATGTTCCAGAAGGGGCGTACCATT GCCATGAGATCGGTGCCAGTAGAAGATGCCTTGTATCCCTGCACCCATAGATATCTGAGT GACTTCAGCTGTAAGGCCGCAACTGCCAATGTACGTTCACTAAAGCAGCAACTCCTTAGC TCCAATTTCTGCAAGCTTGGGCATCCTCGTGCGAATGCCAGCAGCCCATCATCAGATCCC CCGACATTACCAAGCAACATGTAGCGGACGGTCTTGCTAAATTCACCAACATAGTTAAGG CCAATATCTGATAGAGCTCCAGGTCTCACATAAAATGCAAACCTCCGGAGTTTGGTGCAA CCTCTCAGCAAAGCCCGAACCCCGTTGTCAAGTGGCAGGTCAGCTATATGCACCTCTCTA TCAAGCAGGACAAGTCGGAAATCGTTCAGGTTTTTGCTGAACGTACCAATGGCCTCAAGA GCTACATTTGTAATGTCAGACACATGTACTGCCCAGTACTCCAAATCAGGACAGCCTTGA GCTACAGCCATCAATCCTACTTGTGTCACTCTACCTTGTTCGTCCTCGAGACCTCCTTGA TCATCGTCTCCTCTCTCGACTCTGAGTCGATGTAATTTCTTGCAGGTCTGTGCAACAACT TCTAACCCTCGATCTCCTATCACATCCCTCACCTGTTGGAAGACAAAAAATTATCAACAA AACGCGTTTGAGATAGCATATCCACTACCCGACCTCCAGGAAGGAAATATGGCGAAAACA TTTAAAATAATTTGCCAGGACATACCTCCAGAACTTCTAGATTTGGGCAGCGCTGGACTA ATTGACAGTGATCCTCTGTAGTAAGGAATGTAAACTGAAGGTCTAACTTCTTGAGTGTGG CGCCATATGGAAATAATATCTGCATCTCATTTGTTCCCATGTAGAGCAAACTCAAGCGCT GTACCGAAGGAGGGAAATAGTAGTTAGCATAATTGCCACCTTGATCTTGATCATCGAAGG AACCACCAGCAAAGTCTTGTAGTGTTTCTGCTGTGCGGAACAAGTCGACCAGGTCAGACA TGAAACAGTCGCTAATCTTGAGTGTTTTCAGCCTTCGGCAATTTCGCACAAGGAGGAGAA GATGTGCAGGGGATGCCCTGAGATCTGTCAGAAAGAAATTCAGCGTCTCAAGGACAGTAT TGCTGGTAGCAAGCTCGCGGAGCCATTCATCATTTTCTTTCTCAGCAACGGAGCTTTCTT CAAGAAACAACGTTTCCAGTTTCCTGCACATGACAAGAAAT
Protein Sequence (216 aa)
>BART1_0-u29974.003 216 150831_barley_pseudomolecules MAVAQGCPDLEYWAVHVSDITNVALEAIGTFSKNLNDFRLVLLDREVHIADLPLDNGVRA LLRGCTKLRRFAFYVRPGALSDIGLNYVGEFSKTVRYMLLGNVGGSDDGLLAFARGCPSL QKLELRSCCFSERTLAVAALQLKSLRYLWVQGYKASSTGTDLMAMVRPFWNIEFIAPNQS EPCPEGQAQVLAYYSLAGARTDCPMSVIPLYPSVGS