Matching HORVU genes

BarleyRTD transcripts were compared to the location of the IBSC 2017 Predicted Transcripts. Overlapping status is classified as Containing (HORVU is smaller than the BART), Contained (BART is smaller than the HORVU), Partial-Overlap (Overlap exists), and Undefined (the BART transcript has no overlapping HORVU).

HORVU ID	Percentage overlap	BART Gene Direction	HORVU Gene Direction	Overlap Length	Gene Length Difference	Overlapping Status
HORVU4Hr1G060940	99.3	+	+	6678	-47	Partial-Overlap

Transcripts from Gene BART1_0-u29974

Transcript	Length(bp)	Description
BART1_0-u29974.001	4984	4984 bp MSTRG.29974.1 MSTRG.29974
BART1_0-u29974.002	4874	4874 bp MSTRG.29974.2 MSTRG.29974
BART1_0-u29974.003	3821	3821 bp MSTRG.29974.3 MSTRG.29974
BART1_0-u29974.004	2043	2043 bp MSTRG.29974.4 MSTRG.29974
BART1_0-u29974.005	3082	3082 bp MSTRG.29974.5 MSTRG.29974
BART1_0-u29974.006	1720	1720 bp MSTRG.29974.6 MSTRG.29974
BART1_0-u29974.007	1862	1862 bp MSTRG.29974.7 MSTRG.29974
BART1_0-u29974.008	1960	1960 bp MSTRG.29974.8 MSTRG.29974
BART1_0-u29974.009	1484	1484 bp MSTRG.29974.9 MSTRG.29974
BART1_0-u29974.010	1616	1616 bp MSTRG.29974.10 MSTRG.29974
BART1_0-u29974.011	2847	2847 bp MSTRG.29974.11 MSTRG.29974

Exon Structure of BART1_0-u29974

grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons

Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-30)

Database	Hit	Frame	E-value	Score	% Identity	Description
Rice PP7	LOC_Os03g15880.4	-2	0.0	427	221/260 (85%)	protein|coronatine-insensitive protein, putative, expressed
TAIR PP10	AT2G39940 @ ARAPORT AT2G39940.1 @ TAIR	-2	2e-130	326	169/262 (65%)	Symbols: COI1 | RNI-like superfamily protein | chr2:16672848-16675486 REVERSE LENGTH=592
BRACH PP3	Bradi1g67160.1.p	-2	0.0	466	239/260 (92%)	pacid=32806713 transcript=Bradi1g67160.1 locus=Bradi1g67160 ID=Bradi1g67160.1.v3.1 annot-version=v3.1

GO Annotation

Generated by PANNZER

GO ID	GO terms
GO:0008380	RNA splicing
GO:0016607	nuclear speck
GO:0061659	ubiquitin-like protein ligase activity
GO:0000413	protein peptidyl-prolyl isomerization
GO:0006886	intracellular protein transport
GO:0002213	defense response to insect
GO:0006836	neurotransmitter transport
GO:0003700	DNA-binding transcription factor activity
GO:0003723	RNA binding
GO:0005328	neurotransmitter:sodium symporter activity
GO:0016192	vesicle-mediated transport
GO:0003824	catalytic activity
GO:0019005	SCF ubiquitin ligase complex
GO:1990904	ribonucleoprotein complex
GO:0008270	zinc ion binding
GO:0055085	transmembrane transport
GO:0009644	response to high light intensity
GO:0006355	regulation of transcription, DNA-templated
GO:0006397	mRNA processing
GO:0004842	ubiquitin-protein transferase activity
GO:0003755	peptidyl-prolyl cis-trans isomerase activity
GO:0005515	protein binding
GO:0043484	regulation of RNA splicing
GO:0016021	integral component of membrane
GO:0030131	clathrin adaptor complex
GO:0031146	SCF-dependent proteasomal ubiquitin-dependent protein catabolic process
GO:2000022	regulation of jasmonic acid mediated signaling pathway
GO:0016567	protein ubiquitination

Barley PseudoMolecules GBrowse

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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons