- Transcript BART1_0-u29974.002
- Transcript IDBART1_0-u29974.002
- Gene IDBART1_0-u29974
Barley RTD
Exon Structure of BART1_0-u29974.002
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr4H | 1 | 511456072 | 511455807 | + |
| chr4H | 2 | 511457260 | 511457229 | + |
| chr4H | 3 | 511457495 | 511457384 | + |
| chr4H | 4 | 511457741 | 511457592 | + |
| chr4H | 5 | 511458147 | 511458084 | + |
| chr4H | 6 | 511462522 | 511458273 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 1.99359 | 0.914746 | 1.93835 |
| morex | ETI | 0.955032 | 0.446691 | 0.78834 |
| morex | LEA | 1.6189 | 0.910516 | 1.50513 |
| morex | EPI | 1.35602 | 1.57985 | 1.35174 |
| morex | ROO | 1.44205 | 1.01589 | 0.456082 |
| morex | ROO2 | 2.28956 | 0.912354 | 1.06259 |
| morex | NOD | 1.49215 | 2.52155 | 3.70806 |
| morex | RAC | 7.03887 | 7.25055 | 6.48548 |
| morex | INF1 | 1.58512 | 1.65256 | 1.30709 |
| morex | INF2 | 1.53669 | 2.63271 | 1.71604 |
| morex | CAR5 | 2.18945 | 2.72564 | 4.11284 |
| morex | CAR15 | 2.47512 | 1.97159 | 1.58476 |
| morex | LEM | 6.73509 | 7.53405 | 3.66014 |
| morex | LOD | 8.74022 | 6.3996 | 11.9683 |
| morex | PAL | 4.32351 | 4.44467 | 3.18094 |
| morex | SEN | 3.56849 | 4.25538 | 3.38458 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os03g15880.4 | -2 | 0.0 | 427 | 221/260 (85%) | protein|coronatine-insensitive protein, putative, expressed |
| TAIR PP10 | AT2G39940 @ ARAPORT AT2G39940.1 @ TAIR |
-2 | 1e-130 | 326 | 169/262 (65%) | Symbols: COI1 | RNI-like superfamily protein | chr2:16672848-16675486 REVERSE LENGTH=592 |
| BRACH PP3 | Bradi1g67160.1.p | -2 | 0.0 | 466 | 239/260 (92%) | pacid=32806713 transcript=Bradi1g67160.1 locus=Bradi1g67160 ID=Bradi1g67160.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (4874 bp)
>BART1_0-u29974.002 4874 150831_barley_pseudomolecules CGGATGGCAGAAAGAGATGCCAAGTGTTGAAGCGTAAGGTGGTGCCGTGCGGTGCGTACA CTAAGCCGATTCAACCGGATTTGAGAAAGTCTCGCGTCCGGCCCTCTCCAGAACCTTCCG GCAGGTCCTCTCTATTTATTCACACGAGCGCGCGTGCACCATCCAACGGGAAAAGAGAGG CGGTGGTCGCAGGTCGGAACTGACGGAGGCAGAGGCGAAGACGAAGACAGAGACTCGAGA GGCCTCGCAGCGGCGACGAATCAAAGATGTCGTATTCGAGGTACAGGAGTCGTTCAAGGA GTGTGGACTCGAGTGATGTTGAGAACCCTGGGAACAATCTCTTTGTGACTGGTTTATCAT CTCGTCTAACTGATCGAGATCTGGAGAAGCATTTCTCTACAGAGGGAGAGGTGATTGATG CAAGTATTGTACTTGATCCATGGACAAGGGAATCACGGGGATTTGGATTTGTTACCATGG CCAATCTTAAGGAGGCAGAACGCTGCATCAAATATCTCGACAGTTCAGTGCTGGAAGGTC GTGTCATTACTGTTGAGAAGGCAAAGAGAAGACGAGGTCGAACCCCAACACCGGGAAGGT ACCTTGGCAGCAAATCATCGCGTCGAAGGAGGTATTCCCGAAGCAGGTCACCTGTTAGGA GAGACCGTTACGGCTCACGCTACCCGCCCGAGCTAGAACGTTCTTATTCTCCTTATCGCA GAGGACGATCATACTCTCGTCATGACAGGCATAGATCATACTCCCCCTATGGAAGGAGGC CATCCTACTCCCCCTATGAAAGGAGGCCATCCTACTCTCCCTATGGCAGAAGGAGATCAT ACTCTCCTTCCGACAGGTCGGAGTCTCCCTACCACAGGCGTAGATCCTACTCACCCTACG ACAGGCGTCACTCACCCCGCTATGGTCATCGCCACCGTTCAAGATCCCCATACAGTTACA GAAGGCGGAGGTCATGCTCCCATGACCGTTATGTTTCAGCATACTACAGCAGGCGCTATT CTCCAAGGAACAGAAGACGGAGTTACTCTCGCAGCGTATCACCACGCAGGAGCTACTCCC GTAGCTGCTCCCTGGCGTCAGAAGAATCAAGGAGCTGTTCTCCGCAGAAAGGATATGCTG AAAGCAAGGCATCGCGCAGCAGGTCACCTGCGATTGCGAAGAGGCGTTCTAGAGAAAGCT ATGCGCACAGCCGCAGTTCATGCTCGAGGTCCGTCTCCAGGGAGCGCTCAACCTCATCAA GCACCTGATGGTTTACAAAGTGCCTTGATGACTTTGGATGTTTGTAAACAATGTGGATGG TATGATCGTGTACCTAGTGAAGCAGCTGTATTTCGTCATCGTTAACATCTTAAATTGCAG TCTGCTTCCATACTATAGGAGAAAAATGCAGAAAATTTCCTACAGATTGCCTATTCCACA AGGATTTTATAGCATACTTCTACAACGGAAAAAACGCAGAAATTTTCATAAATATTGGCG AGGTCATTTCTTTGTTTCAGATGACCCAGTGCGGATTTTTCTATAGGAATTCGATACTGC AATTTTCCTTTGTTTATAAGATCTCTAACTCAAACCTCATTTTATTATTCTTTGACAAGT TGAATACACTTTCACTGTATTTACCCTCTCCTCAATCCTCTAAAGTTGCTTCCTGTGCAA AAGCATATCTTTCTCTACCTTCTCCTCTGTCCTCTCTTAAATTCCTTCCTGGCAAAACCT TACATATCAGAATCTCTGTGTTCTGTAGACTTTCACGATAAGTATTTTGAAATCATGTAA AATTTCACAGCAAGTGACATCTCAATGCAAAAAAGAAAAGGTCACCACTCGATAGTACCA GATAACTTCACACGCCTATAACAACCAGTTCACCATACAGAGCCACAGATTAAGAGAAGC CGGATAATTGCGACCAGAAAAACTGAGGCCAAGCCACAGCAAAATATCAAGATAGTCATA ACATTGCGCAGAGAGGTTTACAGATGGTACAACAACTAAAGGAATACTGTTCGTAGAACA ACAATACAGTGGGCAAAGGTTCAAGAACAGAAAAATGCCATTACAACTGGGCACATTATT AGAAAATGTGTGTCCGAGCCTTGTCAAAATGGGTGTAGTACACAGAGATATCCATGTTGG CCAGATGAGCAGCTTACCCAGGAATGTTGCCCCTCAAATACGAAGACAATTCAGAGGGGG TCGCTTTTAGTCGAGCTTTCAGTTCCATAATGGCACTGTGGGATGGAATGTCCCTATGTG CCGTATTGTGGGTTTTGCTGGCATCAAACATGTATGTACAGTCAAACTGATGGTCTTTTT AGCTTCCGACTGACGGATAGAGGGGAATTACTGACATGGGACAATCTGTCCTTGCCCCAG CTAGAGAGTAGTACGCCAGAACCTGTGCCTGACCCTCTGGGCAAGGCTCACTTTGATTTG GCGCAATAAACTCAATGTTCCAGAAGGGGCGTACCATTGCCATGAGATCGGTGCCAGTAG AAGATGCCTTGTATCCCTGCACCCATAGATATCTGAGTGACTTCAGCTGTAAGGCCGCAA CTGCCAATGTACGTTCACTAAAGCAGCAACTCCTTAGCTCCAATTTCTGCAAGCTTGGGC ATCCTCGTGCGAATGCCAGCAGCCCATCATCAGATCCCCCGACATTACCAAGCAACATGT AGCGGACGGTCTTGCTAAATTCACCAACATAGTTAAGGCCAATATCTGATAGAGCTCCAG GTCTCACATAAAATGCAAACCTCCGGAGTTTGGTGCAACCTCTCAGCAAAGCCCGAACCC CGTTGTCAAGTGGCAGGTCAGCTATATGCACCTCTCTATCAAGCAGGACAAGTCGGAAAT CGTTCAGGTTTTTGCTGAACGTACCAATGGCCTCAAGAGCTACATTTGTAATGTCAGACA CATGTACTGCCCAGTACTCCAAATCAGGACAGCCTTGAGCTACAGCCATCAATCCTACTT GTGTCACTCTACCTTGTTCGTCCTCGAGACCTCCTTGATCATCGTCTCCTCTCTCGACTC TGAGTCGATGTAATTTCTTGCAGGTCTGTGCAACAACTTCTAACCCTCGATCTCCTATCA CATCCCTCACCTGTTGGAAGACAAAAAATTATCAACAAAACGCGTTTGAGATAGCATATC CACTACCCGACCTCCAGGAAGGAAATATGGCGAAAACATTTAAAATAATTTGCCAGGACA TACCTCCAGAACTTCTAGATTTGGGCAGCGCTGGACTAATTGACAGTGATCCTCTGTAGT AAGGAATGTAAACTGAAGGTCTAACTTCTTGAGTGTGGCGCCATATGGAAATAATATCTG CATCTCATTTGTTCCCATGTAGAGCAAACTCAAGCGCTGTACCGAAGGAGGGAAATAGTA GTTAGCATAATTGCCACCTTGATCTTGATCATCGAAGGAACCACCAGCAAAGTCTTGTAG TGTTTCTGCTGTGCGGAACAAGTCGACCAGGTCAGACATGAAACAGTCGCTAATCTTGAG TGTTTTCAGCCTTCGGCAATTTCGCACAAGGAGGAGAAGATGTGCAGGGGATGCCCTGAG ATCTGTCAGAAAGAAATTCAGCGTCTCAAGGACAGTATTGCTGGTAGCAAGCTCGCGGAG CCATTCATCATTTTCTTTCTCAGCAACGGAGCTTTCTTCAAGAAACAACGTTTCCAGTTT CCTGCACATGACAAGAAATATGATTAATTAAACCAGTAACCTATGAATGTATGCTCTTGC AGTCTAATTAAACTTCTACAACAGCATTTCAATAATCTGCTTTCCAAAACTATCTCTGCC AAGTATCATAGTTCTCTAAGAAAGTATAAGCAATTAAGCAAAGTCCCAAATTCAGCAAGG CAGTTAAAGTCCAGATTTCCTAATTCCTGCTCCAAAGCTAGAATTATTCCCAAATTACAA AGAGTGCCACGATGTTTTACATCATGAAAAGGTGAGACGCTACACTTACTTTTCCCCTTC CCAAATGAACAAAAGAACACCTTATATATACTCGCTTTACAAACATCCCATCCACCAACC ATTTCCAAATAGAACAAAACACAATTTCAGAAGAGAAAAACTAACTAGGATAACTGAAAC TAGAAATTAATTCGTAGGACAAGAAAGAGGTGCTGCAATAATTAATAATAAACGAGCTAA TGCATCCATGCATATCATTTGTGAACCGGAACAAGGAGGGGAGAAATTACTTGCAGCGGC GGGCGACGAGAGCAAGGGAAGGCGTAGAGAAGCCGGAGCAGCGGTCAAGCTTGAGGGATA CGAGCATGTGGGCCTTGGCGCGCACGAGCACTGCGAGGTCGTCGTTGGAGACAATCATCC GGCGGAGATGCAGCACCTTGAGGAACTGGAAGGAGGCGGAGAGCTCGCGGATCCAGGGCG AGGCGTAGCCGCCCCAGTCCTCGGGGATGAGGTTGAACATGGCGGCGCGGGGCTTGGCCT TGAGCTTGAGCGACTCGAGGCAGGGGAAGCGGCGGAAGAGGCGGTCGGGGGTGGTGGAGT AGGCCATGGCGATGGTGACGTGCTTGCGGCTGAGCGCGTCGACCTTGCACCAGTGGCGGC AGACGAGCGAGATGGCGTCGCGGTCCCAGGGGTCCTCCACGCACCCCATGACGAGCCCCA GCGCCACGTCCGGGATCCCGAAGCTCATGGTCCTCCCCAGGTGCCGCTCGTCGCCGCTCA TCGCCGGGAGCAGGACCCCGATCTGCCTGCGCTGCGCCCGCCGCGGATTTCAACGGGGGT TGGGATGAGGTTGAGGGGAGGGCGTCCGTGCGCGTGCGTCCGGGTGTAGAGTGGGAAGGG AAAAGGGAAAGGAG
Protein Sequence (216 aa)
>BART1_0-u29974.002 216 150831_barley_pseudomolecules MAVAQGCPDLEYWAVHVSDITNVALEAIGTFSKNLNDFRLVLLDREVHIADLPLDNGVRA LLRGCTKLRRFAFYVRPGALSDIGLNYVGEFSKTVRYMLLGNVGGSDDGLLAFARGCPSL QKLELRSCCFSERTLAVAALQLKSLRYLWVQGYKASSTGTDLMAMVRPFWNIEFIAPNQS EPCPEGQAQVLAYYSLAGARTDCPMSVIPLYPSVGS