- Transcript BART1_0-u29974.001
- Transcript IDBART1_0-u29974.001
- Gene IDBART1_0-u29974
Barley RTD
Exon Structure of BART1_0-u29974.001
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr4H | 1 | 511456072 | 511455795 | + |
| chr4H | 2 | 511457260 | 511457229 | + |
| chr4H | 3 | 511457495 | 511457384 | + |
| chr4H | 4 | 511457741 | 511457592 | + |
| chr4H | 5 | 511457957 | 511457860 | + |
| chr4H | 6 | 511458147 | 511458084 | + |
| chr4H | 7 | 511462522 | 511458273 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 3.54733 | 4.41343 | 4.20395 |
| morex | ETI | 8.78388 | 8.34371 | 8.4322 |
| morex | LEA | 9.56936 | 7.76268 | 6.9826 |
| morex | EPI | 5.87361 | 7.50832 | 6.10386 |
| morex | ROO | 6.62594 | 4.87605 | 2.18019 |
| morex | ROO2 | 1.52396 | 2.27063 | 1.29857 |
| morex | NOD | 8.13697 | 15.4629 | 5.46318 |
| morex | RAC | 1.64339 | 2.47578 | 2.61196 |
| morex | INF1 | 3.05075 | 3.70321 | 3.46875 |
| morex | INF2 | 12.1371 | 6.36325 | 9.70081 |
| morex | CAR5 | 4.31092 | 5.76574 | 4.06457 |
| morex | CAR15 | 2.47085 | 2.24169 | 2.75026 |
| morex | LEM | 5.63925 | 4.60858 | 2.20299 |
| morex | LOD | 13.7168 | 10.9732 | 22.6248 |
| morex | PAL | 6.02201 | 3.49411 | 6.4996 |
| morex | SEN | 6.78489 | 11.2106 | 9.10442 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os03g15880.4 | -2 | 0.0 | 427 | 221/260 (85%) | protein|coronatine-insensitive protein, putative, expressed |
| TAIR PP10 | AT2G39940 @ ARAPORT AT2G39940.1 @ TAIR |
-2 | 2e-130 | 326 | 169/262 (65%) | Symbols: COI1 | RNI-like superfamily protein | chr2:16672848-16675486 REVERSE LENGTH=592 |
| BRACH PP3 | Bradi1g67160.1.p | -2 | 0.0 | 466 | 239/260 (92%) | pacid=32806713 transcript=Bradi1g67160.1 locus=Bradi1g67160 ID=Bradi1g67160.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (4984 bp)
>BART1_0-u29974.001 4984 150831_barley_pseudomolecules GAAAAAGGAAAACGGATGGCAGAAAGAGATGCCAAGTGTTGAAGCGTAAGGTGGTGCCGT GCGGTGCGTACACTAAGCCGATTCAACCGGATTTGAGAAAGTCTCGCGTCCGGCCCTCTC CAGAACCTTCCGGCAGGTCCTCTCTATTTATTCACACGAGCGCGCGTGCACCATCCAACG GGAAAAGAGAGGCGGTGGTCGCAGGTCGGAACTGACGGAGGCAGAGGCGAAGACGAAGAC AGAGACTCGAGAGGCCTCGCAGCGGCGACGAATCAAAGATGTCGTATTCGAGGTACAGGA GTCGTTCAAGGAGTGTGGACTCGAGTGATGTTGAGAACCCTGGGAACAATCTCTTTGTGA CTGGTTTATCATCTCGTCTAACTGATCGAGATCTGGAGAAGCATTTCTCTACAGAGGGAG AGGTGATTGATGCAAGTATTGTACTTGATCCATGGACAAGGGAATCACGGGGATTTGGAT TTGTTACCATGGCCAATCTTAAGGAGGCAGAACGCTGCATCAAATATCTCGACAGTTCAG TGCTGGAAGGTCGTGTCATTACTGTTGAGAAGATTTTGTTGACAGCAGCAGGTTGATGCC CGCAGCTGTATGGCATCAAATTCAAAAGATACACAACCTAAGATCGAAACAATGCTACCT CAACCAAAGGGCAAAGAGAAGACGAGGTCGAACCCCAACACCGGGAAGGTACCTTGGCAG CAAATCATCGCGTCGAAGGAGGTATTCCCGAAGCAGGTCACCTGTTAGGAGAGACCGTTA CGGCTCACGCTACCCGCCCGAGCTAGAACGTTCTTATTCTCCTTATCGCAGAGGACGATC ATACTCTCGTCATGACAGGCATAGATCATACTCCCCCTATGGAAGGAGGCCATCCTACTC CCCCTATGAAAGGAGGCCATCCTACTCTCCCTATGGCAGAAGGAGATCATACTCTCCTTC CGACAGGTCGGAGTCTCCCTACCACAGGCGTAGATCCTACTCACCCTACGACAGGCGTCA CTCACCCCGCTATGGTCATCGCCACCGTTCAAGATCCCCATACAGTTACAGAAGGCGGAG GTCATGCTCCCATGACCGTTATGTTTCAGCATACTACAGCAGGCGCTATTCTCCAAGGAA CAGAAGACGGAGTTACTCTCGCAGCGTATCACCACGCAGGAGCTACTCCCGTAGCTGCTC CCTGGCGTCAGAAGAATCAAGGAGCTGTTCTCCGCAGAAAGGATATGCTGAAAGCAAGGC ATCGCGCAGCAGGTCACCTGCGATTGCGAAGAGGCGTTCTAGAGAAAGCTATGCGCACAG CCGCAGTTCATGCTCGAGGTCCGTCTCCAGGGAGCGCTCAACCTCATCAAGCACCTGATG GTTTACAAAGTGCCTTGATGACTTTGGATGTTTGTAAACAATGTGGATGGTATGATCGTG TACCTAGTGAAGCAGCTGTATTTCGTCATCGTTAACATCTTAAATTGCAGTCTGCTTCCA TACTATAGGAGAAAAATGCAGAAAATTTCCTACAGATTGCCTATTCCACAAGGATTTTAT AGCATACTTCTACAACGGAAAAAACGCAGAAATTTTCATAAATATTGGCGAGGTCATTTC TTTGTTTCAGATGACCCAGTGCGGATTTTTCTATAGGAATTCGATACTGCAATTTTCCTT TGTTTATAAGATCTCTAACTCAAACCTCATTTTATTATTCTTTGACAAGTTGAATACACT TTCACTGTATTTACCCTCTCCTCAATCCTCTAAAGTTGCTTCCTGTGCAAAAGCATATCT TTCTCTACCTTCTCCTCTGTCCTCTCTTAAATTCCTTCCTGGCAAAACCTTACATATCAG AATCTCTGTGTTCTGTAGACTTTCACGATAAGTATTTTGAAATCATGTAAAATTTCACAG CAAGTGACATCTCAATGCAAAAAAGAAAAGGTCACCACTCGATAGTACCAGATAACTTCA CACGCCTATAACAACCAGTTCACCATACAGAGCCACAGATTAAGAGAAGCCGGATAATTG CGACCAGAAAAACTGAGGCCAAGCCACAGCAAAATATCAAGATAGTCATAACATTGCGCA GAGAGGTTTACAGATGGTACAACAACTAAAGGAATACTGTTCGTAGAACAACAATACAGT GGGCAAAGGTTCAAGAACAGAAAAATGCCATTACAACTGGGCACATTATTAGAAAATGTG TGTCCGAGCCTTGTCAAAATGGGTGTAGTACACAGAGATATCCATGTTGGCCAGATGAGC AGCTTACCCAGGAATGTTGCCCCTCAAATACGAAGACAATTCAGAGGGGGTCGCTTTTAG TCGAGCTTTCAGTTCCATAATGGCACTGTGGGATGGAATGTCCCTATGTGCCGTATTGTG GGTTTTGCTGGCATCAAACATGTATGTACAGTCAAACTGATGGTCTTTTTAGCTTCCGAC TGACGGATAGAGGGGAATTACTGACATGGGACAATCTGTCCTTGCCCCAGCTAGAGAGTA GTACGCCAGAACCTGTGCCTGACCCTCTGGGCAAGGCTCACTTTGATTTGGCGCAATAAA CTCAATGTTCCAGAAGGGGCGTACCATTGCCATGAGATCGGTGCCAGTAGAAGATGCCTT GTATCCCTGCACCCATAGATATCTGAGTGACTTCAGCTGTAAGGCCGCAACTGCCAATGT ACGTTCACTAAAGCAGCAACTCCTTAGCTCCAATTTCTGCAAGCTTGGGCATCCTCGTGC GAATGCCAGCAGCCCATCATCAGATCCCCCGACATTACCAAGCAACATGTAGCGGACGGT CTTGCTAAATTCACCAACATAGTTAAGGCCAATATCTGATAGAGCTCCAGGTCTCACATA AAATGCAAACCTCCGGAGTTTGGTGCAACCTCTCAGCAAAGCCCGAACCCCGTTGTCAAG TGGCAGGTCAGCTATATGCACCTCTCTATCAAGCAGGACAAGTCGGAAATCGTTCAGGTT TTTGCTGAACGTACCAATGGCCTCAAGAGCTACATTTGTAATGTCAGACACATGTACTGC CCAGTACTCCAAATCAGGACAGCCTTGAGCTACAGCCATCAATCCTACTTGTGTCACTCT ACCTTGTTCGTCCTCGAGACCTCCTTGATCATCGTCTCCTCTCTCGACTCTGAGTCGATG TAATTTCTTGCAGGTCTGTGCAACAACTTCTAACCCTCGATCTCCTATCACATCCCTCAC CTGTTGGAAGACAAAAAATTATCAACAAAACGCGTTTGAGATAGCATATCCACTACCCGA CCTCCAGGAAGGAAATATGGCGAAAACATTTAAAATAATTTGCCAGGACATACCTCCAGA ACTTCTAGATTTGGGCAGCGCTGGACTAATTGACAGTGATCCTCTGTAGTAAGGAATGTA AACTGAAGGTCTAACTTCTTGAGTGTGGCGCCATATGGAAATAATATCTGCATCTCATTT GTTCCCATGTAGAGCAAACTCAAGCGCTGTACCGAAGGAGGGAAATAGTAGTTAGCATAA TTGCCACCTTGATCTTGATCATCGAAGGAACCACCAGCAAAGTCTTGTAGTGTTTCTGCT GTGCGGAACAAGTCGACCAGGTCAGACATGAAACAGTCGCTAATCTTGAGTGTTTTCAGC CTTCGGCAATTTCGCACAAGGAGGAGAAGATGTGCAGGGGATGCCCTGAGATCTGTCAGA AAGAAATTCAGCGTCTCAAGGACAGTATTGCTGGTAGCAAGCTCGCGGAGCCATTCATCA TTTTCTTTCTCAGCAACGGAGCTTTCTTCAAGAAACAACGTTTCCAGTTTCCTGCACATG ACAAGAAATATGATTAATTAAACCAGTAACCTATGAATGTATGCTCTTGCAGTCTAATTA AACTTCTACAACAGCATTTCAATAATCTGCTTTCCAAAACTATCTCTGCCAAGTATCATA GTTCTCTAAGAAAGTATAAGCAATTAAGCAAAGTCCCAAATTCAGCAAGGCAGTTAAAGT CCAGATTTCCTAATTCCTGCTCCAAAGCTAGAATTATTCCCAAATTACAAAGAGTGCCAC GATGTTTTACATCATGAAAAGGTGAGACGCTACACTTACTTTTCCCCTTCCCAAATGAAC AAAAGAACACCTTATATATACTCGCTTTACAAACATCCCATCCACCAACCATTTCCAAAT AGAACAAAACACAATTTCAGAAGAGAAAAACTAACTAGGATAACTGAAACTAGAAATTAA TTCGTAGGACAAGAAAGAGGTGCTGCAATAATTAATAATAAACGAGCTAATGCATCCATG CATATCATTTGTGAACCGGAACAAGGAGGGGAGAAATTACTTGCAGCGGCGGGCGACGAG AGCAAGGGAAGGCGTAGAGAAGCCGGAGCAGCGGTCAAGCTTGAGGGATACGAGCATGTG GGCCTTGGCGCGCACGAGCACTGCGAGGTCGTCGTTGGAGACAATCATCCGGCGGAGATG CAGCACCTTGAGGAACTGGAAGGAGGCGGAGAGCTCGCGGATCCAGGGCGAGGCGTAGCC GCCCCAGTCCTCGGGGATGAGGTTGAACATGGCGGCGCGGGGCTTGGCCTTGAGCTTGAG CGACTCGAGGCAGGGGAAGCGGCGGAAGAGGCGGTCGGGGGTGGTGGAGTAGGCCATGGC GATGGTGACGTGCTTGCGGCTGAGCGCGTCGACCTTGCACCAGTGGCGGCAGACGAGCGA GATGGCGTCGCGGTCCCAGGGGTCCTCCACGCACCCCATGACGAGCCCCAGCGCCACGTC CGGGATCCCGAAGCTCATGGTCCTCCCCAGGTGCCGCTCGTCGCCGCTCATCGCCGGGAG CAGGACCCCGATCTGCCTGCGCTGCGCCCGCCGCGGATTTCAACGGGGGTTGGGATGAGG TTGAGGGGAGGGCGTCCGTGCGCGTGCGTCCGGGTGTAGAGTGGGAAGGGAAAAGGGAAA GGAG
Protein Sequence (260 aa)
>BART1_0-u29974.001 260 150831_barley_pseudomolecules MPAAVWHQIQKIHNLRSKQCYLNQRAKRRRGRTPTPGRYLGSKSSRRRRYSRSRSPVRRD RYGSRYPPELERSYSPYRRGRSYSRHDRHRSYSPYGRRPSYSPYERRPSYSPYGRRRSYS PSDRSESPYHRRRSYSPYDRRHSPRYGHRHRSRSPYSYRRRRSCSHDRYVSAYYSRRYSP RNRRRSYSRSVSPRRSYSRSCSLASEESRSCSPQKGYAESKASRSRSPAIAKRRSRESYA HSRSSCSRSVSRERSTSSST