- Transcript BART1_0-u29392.005
- Transcript IDBART1_0-u29392.005
- Gene IDBART1_0-u29392
Barley RTD
Exon Structure of BART1_0-u29392.005
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr4H | 1 | 437920383 | 437920134 | + |
| chr4H | 2 | 437921901 | 437921810 | + |
| chr4H | 3 | 437922289 | 437922155 | + |
| chr4H | 4 | 437922435 | 437922379 | + |
| chr4H | 5 | 437922588 | 437922516 | + |
| chr4H | 6 | 437923067 | 437922909 | + |
| chr4H | 7 | 437923504 | 437923355 | + |
| chr4H | 8 | 437923835 | 437923580 | + |
| chr4H | 9 | 437924043 | 437923928 | + |
| chr4H | 10 | 437924432 | 437924178 | + |
| chr4H | 11 | 437924580 | 437924518 | + |
| chr4H | 12 | 437924741 | 437924685 | + |
| chr4H | 13 | 437924951 | 437924855 | + |
| chr4H | 14 | 437925544 | 437925018 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 18.9073 | 34.4296 | 40.5031 |
| morex | ETI | 3.42047 | 1.84434 | 3.15053 |
| morex | LEA | 27.303 | 10.9242 | 7.69032 |
| morex | EPI | 1.79798 | 5.12367 | 3.69384 |
| morex | ROO | 11.0508 | 22.2587 | 11.5486 |
| morex | ROO2 | 3.53509 | 3.50949 | 5.77686 |
| morex | NOD | 84.204 | 26.1497 | 17.5872 |
| morex | RAC | 16.2593 | 9.64885 | 12.7786 |
| morex | INF1 | 50.0856 | 36.9228 | 35.0194 |
| morex | INF2 | 32.704 | 31.6934 | 33.9176 |
| morex | CAR5 | 38.7479 | 39.2008 | 43.2544 |
| morex | CAR15 | 11.0038 | 10.0314 | 10.4603 |
| morex | LEM | 9.19775 | 9.71213 | 4.93433 |
| morex | LOD | 6.90808 | 4.7875 | 4.9825 |
| morex | PAL | 14.63 | 15.171 | 12.1191 |
| morex | SEN | 2.19886 | 0.0000000322236 | 2.46179 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os03g19970.1 | +2 | 0.0 | 691 | 333/374 (89%) | protein|CAS1 domain-containing protein 1 precursor, putative, expressed |
| TAIR PP10 | AT5G46340 @ ARAPORT AT5G46340.1 @ TAIR |
+2 | 0.0 | 535 | 260/372 (70%) | Symbols: | O-acetyltransferase family protein | chr5:18796361-18799725 REVERSE LENGTH=540 |
| BRACH PP3 | Bradi1g64180.2.p | +2 | 0.0 | 721 | 350/374 (94%) | pacid=32801052 transcript=Bradi1g64180.2 locus=Bradi1g64180 ID=Bradi1g64180.2.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (2287 bp)
>BART1_0-u29392.005 2287 150831_barley_pseudomolecules GTCGTATCACGCGTACCTCCATCCATCCTCGTTCCCACCTCGCCGTCCGCTTTAAACCGG AGAGGCCTTTTTGCTCTCACGCAAAGCCGCGCTTATTTTCTCTCGGTTACCTAATTTTTG CCCCCTTCTCCTCCGATTCGCGTTTGGATCCCAGCGCCAAAGCTTGGCGGATGCTGTAGA AATGGCGGAGGCGCTCGCGTCCGCGGGTGGGCTCGCCATGGCGGCCTCGACCTCTTTCAC GCCCGGCCAGCTTTCTGCTTTTCTGGGATTTCTTTGGGTTCTTGCGGCCTGGGTGTATGC GGAGGTTCTCTTTCATAGGAAGAATGCTGCTTCACTTAAAACACACTCGGACATCAATTT ATCAGATATGGATAGTAGCTCAAACAAAGGAGAGGATCAAACAATGTTACTGGAGGAGGG TGGTCAAGTAGCTGGTGCAAAGCCAGTTTATGCTTCTTTCACATCACAGATGCTCAGACT TTTCTGTATGGACCAGACACTTCTTCTGGAGCATCGATTGACACTGAGGGCAATATCTGA GCTTGGAGGCCATCTACTTTACTTTTACATATGTGACCGCACAAATATATTCGGGGAATC TGGAAAGAATTACAGCCGAGATCTCTTCCTTTTCCTCTATTTTCTTCTTATCATCGTAGC AGCTATTACTTCCTTCAAGATCCACCAAGATAAGTCCACATTCACTGGAAAATCTATACT ATATTTGAATAGGCATCAGACAGAAGAATGGAAGGGTTGGATGCAGGTGCTATTCTTGAT GTACCACTACTTCAATGCTAAAGAGATCTACAATGCGATTCGTGTGTTCATTGCTGCATA TGTCTGGATGACTGGGTTTGGTAACTTCTCCTATTATTATGTGCGGAAGGATTTCAGTCT GGGACGATTTGCTCAGATGATGTGGCGCCTCAATTTCTTTGTGGCATTCTGTTGCATTGT CCTGAATAATGATTACACACTATATTATATTTGCCCTATGCACACTCTTTTCACCCTCAT GGTGTATGGTGCTCTTGGAATACTAAACAAGTACAATGAGATTAGATCAGTGATTGCTAT AAAATTTGTTGGGTGCTTCTTGGTAGTTATCTTGGTATGGGAAATCCCAGGTGTCTTTGA GATAGTCTGGAGCCCATTCACTTTTCTTCTAGGTTATGATGATCCTTCTAAACCAGATCT CCCTAGGTTGCATGAGTGGCACTTCCGATCTGGACTGGATCGCTACATATGGATTGTGGG GATGATATATGCCTATTACCATCCAACAGTTGAGAAGTGGATGGAAAAGCTTGAAGAAGC TGAAACAAGAACGAAGCTCTATATTAAGGCCTCTATAGTTACAGTTTCTATAACGGTAAT TATCAAACATCTACATCAGATTGTCTGCCATAGATATATTTTAATACGATCTGCTGGCTT TCTGGTGAACACAGGCTGGGTATTTGTGGTACGAGTACATCTACAAGATGGACAAGATTA CCTACAATAAATACCATCCTTACACATCCTGGATCCCCATAACTGTTTACATCTGCCTGC GCAACTTCACTCAAGAATTCCGGGCGTGCTCTCTCACGCTATTTGCCTGGCTTGGAAAGA TTACACTAGAAACATATATATCTCAGTTCCATATCTGGCTCAGATCAAAGGTGCCCAATG GGCAACCCAAGTGGCTGTTGACGATAATCCCAGATTACCCACTGCTTAACTTCATGCTCA CGACTGCGCTATATGTTGCGCATGTGTTTCTGCAGGTTTCCCATAGGCTCTTCGAACTCA CTAATACTTTGAAGATAGCATTTGTACCTCGTGACAACAAGCACCTCTCGTACAATTTTG TTGCAGGGATTGCCATTTCAGTTGCACTCTACTCTGTATCATTTGCCTTAGTTGGCATAG CAGGATACTAGCAAATTTAGCCATTAGCTGTTAGTTCTAGTTATAGTCTAGGCTATCAAC AAAGCTAGTTTTGATCGTCGGTGAGATAAAAGTCAATGGGCGAAGCATGATTGACAGCGC ATAAACTGCTTCTCTTTCACCCTTGGCCTTGAGTCGGCGTGCACAAGTTTTAGTCTTGAA TAGTGTAAAATGTACAATTTGCCACTATCATATCCTTGACATTGTTGGTTGTGAATGTAA TTCTTGAGGTTGAGTAATACAAGAATTTATTTTAAAAAAGTATTGCTTGTATAGATGTTG AAATGCATACCGGAGTGTAACAGCCTGAGACCGACGCTTCAGAAGATTCCCTTTTTATTC CAATTGT
Protein Sequence (442 aa)
>BART1_0-u29392.005 442 150831_barley_pseudomolecules MAEALASAGGLAMAASTSFTPGQLSAFLGFLWVLAAWVYAEVLFHRKNAASLKTHSDINL SDMDSSSNKGEDQTMLLEEGGQVAGAKPVYASFTSQMLRLFCMDQTLLLEHRLTLRAISE LGGHLLYFYICDRTNIFGESGKNYSRDLFLFLYFLLIIVAAITSFKIHQDKSTFTGKSIL YLNRHQTEEWKGWMQVLFLMYHYFNAKEIYNAIRVFIAAYVWMTGFGNFSYYYVRKDFSL GRFAQMMWRLNFFVAFCCIVLNNDYTLYYICPMHTLFTLMVYGALGILNKYNEIRSVIAI KFVGCFLVVILVWEIPGVFEIVWSPFTFLLGYDDPSKPDLPRLHEWHFRSGLDRYIWIVG MIYAYYHPTVEKWMEKLEEAETRTKLYIKASIVTVSITVIIKHLHQIVCHRYILIRSAGF LVNTGWVFVVRVHLQDGQDYLQ