- Gene BART1_0-u29392
- Gene IDBART1_0-u29392
- Location chr4H: 437919872 - 437925741
Barley RTD
Matching HORVU genes
BarleyRTD transcripts were compared to the location of the IBSC 2017 Predicted Transcripts. Overlapping status is classified as Containing (HORVU is smaller than the BART), Contained (BART is smaller than the HORVU), Partial-Overlap (Overlap exists), and Undefined (the BART transcript has no overlapping HORVU).| HORVU ID | Percentage overlap | BART Gene Direction | HORVU Gene Direction | Overlap Length | Gene Length Difference | Overlapping Status |
|---|---|---|---|---|---|---|
| HORVU4Hr1G052720 | 92.5 | + | + | 5427 | -443 | Containing |
Transcripts from Gene BART1_0-u29392
| Transcript | Length(bp) | Description |
|---|---|---|
| BART1_0-u29392.001 | 2655 | 2655 bp MSTRG.29392.1 MSTRG.29392 |
| BART1_0-u29392.002 | 2652 | 2652 bp MSTRG.29392.2 MSTRG.29392 |
| BART1_0-u29392.003 | 2345 | 2345 bp MSTRG.29392.3 MSTRG.29392 |
| BART1_0-u29392.004 | 2152 | 2152 bp MSTRG.29392.4 MSTRG.29392 |
| BART1_0-u29392.005 | 2287 | 2287 bp MSTRG.29392.5 MSTRG.29392 |
Exon Structure of BART1_0-u29392
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os03g19970.1 | +3 | 0.0 | 986 | 479/538 (89%) | protein|CAS1 domain-containing protein 1 precursor, putative, expressed |
| TAIR PP10 | AT5G46340 @ ARAPORT AT5G46340.1 @ TAIR |
+3 | 0.0 | 776 | 377/532 (71%) | Symbols: | O-acetyltransferase family protein | chr5:18796361-18799725 REVERSE LENGTH=540 |
| BRACH PP3 | Bradi1g64180.1.p | +3 | 0.0 | 1036 | 503/537 (94%) | pacid=32801051 transcript=Bradi1g64180.1 locus=Bradi1g64180 ID=Bradi1g64180.1.v3.1 annot-version=v3.1 |
GO Annotation
Generated by PANNZER| GO ID | GO terms |
|---|---|
| GO:0045492 | xylan biosynthetic process |
| GO:0016407 | acetyltransferase activity |
| GO:0008374 | O-acyltransferase activity |
| GO:0016491 | oxidoreductase activity |
| GO:0098588 | bounding membrane of organelle |
| GO:0016021 | integral component of membrane |
| GO:0005794 | Golgi apparatus |
| GO:0055114 | oxidation-reduction process |
| GO:1990937 | xylan acetylation |
| GO:0009834 | plant-type secondary cell wall biogenesis |
| GO:0044446 | intracellular organelle part |
| GO:0010411 | xyloglucan metabolic process |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons