- Transcript BART1_0-u29392.004
- Transcript IDBART1_0-u29392.004
- Gene IDBART1_0-u29392
Barley RTD
Exon Structure of BART1_0-u29392.004
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr4H | 1 | 437920145 | 437920019 | + |
| chr4H | 2 | 437920383 | 437920288 | + |
| chr4H | 3 | 437921901 | 437921810 | + |
| chr4H | 4 | 437922289 | 437922152 | + |
| chr4H | 5 | 437922435 | 437922379 | + |
| chr4H | 6 | 437922588 | 437922516 | + |
| chr4H | 7 | 437923067 | 437922909 | + |
| chr4H | 8 | 437923504 | 437923355 | + |
| chr4H | 9 | 437923835 | 437923580 | + |
| chr4H | 10 | 437924043 | 437923928 | + |
| chr4H | 11 | 437924264 | 437924178 | + |
| chr4H | 12 | 437924432 | 437924344 | + |
| chr4H | 13 | 437924580 | 437924518 | + |
| chr4H | 14 | 437924741 | 437924685 | + |
| chr4H | 15 | 437924951 | 437924855 | + |
| chr4H | 16 | 437925527 | 437925033 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 23.0469 | 5.72615 | 11.519 |
| morex | ETI | 35.77 | 19.268 | 15.1813 |
| morex | LEA | 1.66129 | 1.30558 | 22.0529 |
| morex | EPI | 14.1176 | 28.0156 | 19.2261 |
| morex | ROO | 26.3488 | 5.17208 | 0.00000647217 |
| morex | ROO2 | 60.3476 | 59.674 | 55.3821 |
| morex | NOD | 47.5733 | 168.972 | 88.0433 |
| morex | RAC | 126.749 | 110.225 | 97.723 |
| morex | INF1 | 0 | 0.138134 | 6.78078 |
| morex | INF2 | 0 | 0 | 0 |
| morex | CAR5 | 0 | 0 | 0 |
| morex | CAR15 | 1.27723 | 4.58194 | 1.24702 |
| morex | LEM | 81.4621 | 68.697 | 58.0579 |
| morex | LOD | 72.6173 | 67.7436 | 77.4951 |
| morex | PAL | 141.711 | 135.751 | 140.911 |
| morex | SEN | 11.7594 | 11.085 | 12.4577 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os03g19970.1 | +2 | 0.0 | 985 | 479/538 (89%) | protein|CAS1 domain-containing protein 1 precursor, putative, expressed |
| TAIR PP10 | AT5G46340 @ ARAPORT AT5G46340.1 @ TAIR |
+2 | 0.0 | 776 | 377/532 (71%) | Symbols: | O-acetyltransferase family protein | chr5:18796361-18799725 REVERSE LENGTH=540 |
| BRACH PP3 | Bradi1g64180.1.p | +2 | 0.0 | 1036 | 503/537 (94%) | pacid=32801051 transcript=Bradi1g64180.1 locus=Bradi1g64180 ID=Bradi1g64180.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (2152 bp)
>BART1_0-u29392.004 2152 150831_barley_pseudomolecules CCTAAATCTAACCTAACTCTTTCAGTTAGACTGTCACTTGCAAATCGCACCGACTGTGGG TCCCGTTGTCCATCGCCGGTGGCCCCGCATGCAGTGTCTGCGCGACTCTCCGTCCGTCGT ATCACGCCGCCAAAGCTTGGCGGATGCTGTAGAAATGGCGGAGGCGCTCGCGTCCGCGGG TGGGCTCGCCATGGCGGCCTCGACCTCTTTCACGCCCGGCCAGCTTTCTGCTTTTCTGGG ATTTCTTTGGGTTCTTGCGGCCTGGGTGTATGCGGAGGTTCTCTTTCATAGGAAGAATGC TGCTTCACTTAAAACTAGACACTCGGACATCAATTTATCAGATATGGATAGTAGCTCAAA CAAAGGAGAGGATCAAACAATGTTACTGGAGGAGGGTGGTCAAGTAGCTGGTGCAAAGCC AGTTTATGCTTCTTTCACATCACAGATGCTCAGACTTTTCTGTATGGACCAGACACTTCT TCTGGAGCATCGATTGACACTGAGGGCAATATCTGAGCTTGGAGGCCATCTACTTTACTT TTACATATGTGACCGCACAAATATATTCGGGGAATCTGGAAAGAATTACAGCCGAGATCT CTTCCTTTTCCTCTATTTTCTTCTTATCATCGTAGCAGCTATTACTTCCTTCAAGATCCA CCAAGATAAGTCCACATTCACTGGAAAATCTATACTATATTTGAATAGGCATCAGACAGA AGAATGGAAGGGTTGGATGCAGGTGCTATTCTTGATGTACCACTACTTCAATGCTAAAGA GATCTACAATGCGATTCGTGTGTTCATTGCTGCATATGTCTGGATGACTGGGTTTGGTAA CTTCTCCTATTATTATGTGCGGAAGGATTTCAGTCTGGGACGATTTGCTCAGATGATGTG GCGCCTCAATTTCTTTGTGGCATTCTGTTGCATTGTCCTGAATAATGATTACACACTATA TTATATTTGCCCTATGCACACTCTTTTCACCCTCATGGTGTATGGTGCTCTTGGAATACT AAACAAGTACAATGAGATTAGATCAGTGATTGCTATAAAATTTGTTGGGTGCTTCTTGGT AGTTATCTTGGTATGGGAAATCCCAGGTGTCTTTGAGATAGTCTGGAGCCCATTCACTTT TCTTCTAGGTTATGATGATCCTTCTAAACCAGATCTCCCTAGGTTGCATGAGTGGCACTT CCGATCTGGACTGGATCGCTACATATGGATTGTGGGGATGATATATGCCTATTACCATCC AACAGTTGAGAAGTGGATGGAAAAGCTTGAAGAAGCTGAAACAAGAACGAAGCTCTATAT TAAGGCCTCTATAGTTACAGTTTCTATAACGGCTGGGTATTTGTGGTACGAGTACATCTA CAAGATGGACAAGATTACCTACAATAAATACCATCCTTACACATCCTGGATCCCCATAAC TGTTTACATCTGCCTGCGCAACTTCACTCAAGAATTCCGGGCGTGCTCTCTCACGCTATT TGCCTGGCTTGGAAAGATTACACTAGAAACATATATATCTCAGTTCCATATCTGGCTCAG ATCAAAGGTGCCCAATGGGCAACCCAAGTGGCTGTTGACGATAATCCCAGATTACCCACT GCTTAACTTCATGCTCACGACTGCGCTATATGTTGCGGTTTCCCATAGGCTCTTCGAACT CACTAATACTTTGAAGATAGCATTTGTACCTCGTGACAACAAGCACCTCTCGTACAATTT TGTTGCAGGGATTGCCATTTCAGTTGCACTCTACTCTGTATCATTTGCCTTAGTTGGCAT AGCAGGATACTAGCAAATTTAGCCATTAGCTGTTAGTTCTAGTTATAGTCTAGGCTATCA ACAAAGCTAGTTTTGATCGTCGGTGAGATAAAAGTCAATGGGCGAAGCATGATTGACAGC GCATAAACTGCTTCTCTTTCACCCTTGGCCTTGAGTCGGCGTGCACAAGTTTTAGTCTTG AATAGTGTAAAATGTACAATTTGCCACTATCATATCCTTGACATTGTTGGTTGTGAATGT AATTCTTGAGGTTGAGTAATACAAGAATTTATTTTAAAAAAGTATTGCTTGTATAGATGT TGAAATGCATACCGGAGTGTAACAGCCTGAGACCGACGCTTCAGAAGATTCC
Protein Sequence (574 aa)
>BART1_0-u29392.004 574 150831_barley_pseudomolecules MQCLRDSPSVVSRRQSLADAVEMAEALASAGGLAMAASTSFTPGQLSAFLGFLWVLAAWV YAEVLFHRKNAASLKTRHSDINLSDMDSSSNKGEDQTMLLEEGGQVAGAKPVYASFTSQM LRLFCMDQTLLLEHRLTLRAISELGGHLLYFYICDRTNIFGESGKNYSRDLFLFLYFLLI IVAAITSFKIHQDKSTFTGKSILYLNRHQTEEWKGWMQVLFLMYHYFNAKEIYNAIRVFI AAYVWMTGFGNFSYYYVRKDFSLGRFAQMMWRLNFFVAFCCIVLNNDYTLYYICPMHTLF TLMVYGALGILNKYNEIRSVIAIKFVGCFLVVILVWEIPGVFEIVWSPFTFLLGYDDPSK PDLPRLHEWHFRSGLDRYIWIVGMIYAYYHPTVEKWMEKLEEAETRTKLYIKASIVTVSI TAGYLWYEYIYKMDKITYNKYHPYTSWIPITVYICLRNFTQEFRACSLTLFAWLGKITLE TYISQFHIWLRSKVPNGQPKWLLTIIPDYPLLNFMLTTALYVAVSHRLFELTNTLKIAFV PRDNKHLSYNFVAGIAISVALYSVSFALVGIAGY