- Transcript BART1_0-u27957.016
- Transcript IDBART1_0-u27957.016
- Gene IDBART1_0-u27957
Barley RTD
Exon Structure of BART1_0-u27957.016
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr4H | 1 | 166877905 | 166877310 | - |
| chr4H | 2 | 166878412 | 166878081 | - |
| chr4H | 3 | 166878985 | 166878513 | - |
| chr4H | 4 | 166879379 | 166879237 | - |
| chr4H | 5 | 166882942 | 166879812 | - |
| chr4H | 6 | 166885403 | 166884994 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 0 | 0 | 0 |
| morex | ETI | 249.135 | 276.326 | 16.8643 |
| morex | LEA | 0 | 0 | 0 |
| morex | EPI | 0 | 0 | 0 |
| morex | ROO | 0 | 0 | 0 |
| morex | ROO2 | 0 | 0 | 0 |
| morex | NOD | 0 | 0 | 0 |
| morex | RAC | 0 | 0 | 0 |
| morex | INF1 | 0 | 0 | 0 |
| morex | INF2 | 0 | 0 | 0 |
| morex | CAR5 | 0 | 0 | 0 |
| morex | CAR15 | 0 | 0 | 0 |
| morex | LEM | 0 | 0 | 0 |
| morex | LOD | 0 | 0 | 0 |
| morex | PAL | 0 | 0 | 0 |
| morex | SEN | 0 | 0 | 0 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os11g47970.1 | +2 | 0.0 | 760 | 375/438 (86%) | protein|AAA-type ATPase family protein, putative, expressed |
| TAIR PP10 | AT2G39730 @ ARAPORT AT2G39730.2 @ TAIR |
+3 | 0.0 | 706 | 341/423 (81%) | Symbols: RCA | rubisco activase | chr2:16571046-16573345 REVERSE LENGTH=446 |
| BRACH PP3 | Bradi4g09120.1.p | +3 | 0.0 | 806 | 389/438 (89%) | pacid=32788533 transcript=Bradi4g09120.1 locus=Bradi4g09120 ID=Bradi4g09120.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (5085 bp)
>BART1_0-u27957.016 5085 150831_barley_pseudomolecules TGCGTGATTACGCAGGGACGCTCTAGAATAGTCTCTCACGCTCTAGGTCACTCCAGTCGT GTTGGACGCTTGCTCCATGGCCATCTGTCCATGCACCTATATAAGACGCCATGGCCAAGC TCCATCGATCGGCATCGCATCTGTACCTGCTAACCACTGCACCCCTCTCTTTTATCCATA TCAGCTCCATCCATCACTGACGATCGATCTCAGTCCACCTGCATCTGTAGGTGTACTAGT AGTACGCCGGCCTAATCCAGCTGAGAGCTGATCGAGCTAGCTTGCATATACCACTGCACG TACGCACATCAAATTAATTAGAAACTACTGTAATTAAGTTATCAGCAGCGAGAAGAGAAC GATCGATCAACACCATGGCTTCTGCTTTCTCGTCCACCGTTGGAGCTCCGGCGTCGACCC CGACCATCTTCCTGGGCAAGAAGGTGAAGAACTACTACCATGGTGGCAACAAGATGAAGA GCAGGGTGGTGAGGGTCATGGCGGCCAAAAAGGAACTTGACCAGGGCAAGCAGACCGATG CGGACCGGTGGAAGGGTCTGGCCTACGACATCTCGGACGACCAGCAGGACATCACTCGGG GGAAAGGCATCGTGGACTCCCTGTTCCAGGCCCCCATGGGCGACGGCACCCACGAGGCCA TCCTAAGCTCCTACGAGTACATCAGCCAGGGCCTGCGGAAGTACGACTTCGACAACACCA TGGACGGGCTGTACATCGCGCCGGCATTCATGGACAAGCTCATCGTCCACCTCGCCAAGA ACTTCATGACACTCCCCAACATCAAGGTTCCTCTCATCCTGGGTATCTGGGGAGGCAAGG GACAGGGCAAGTCGTTCCAGTGTGAGCTGGTGTTCGCCAAGATGGGCATCAACCCCATCA TGATGAGCGCCGGTGAGCTGGAGAGCGGCAACGCCGGCGAGCCGGCCAAGCTGATCCGGC AGAGGTACCGCGAGGCGGCCGACATTATCAACAAGGGCAAGATGTGCTGCCTCTTCATCA ACGACCTGGACGCCGGCGCGGGCCGGATGGGCGGGACGACGCAGTACACGGTGAACAACC AGATGGTGAACGCCACCCTGATGAACATCGCGGACGCGCCCACCAACGTGCAGCTCCCGG GGATGTACAACAAGGAGGAGAACCCCCGCGTGCCCATCATCGTCACCGGCAACGACTTCT CGACGCTGTACGCTCCCCTGATCCGTGACGGGCGCATGGAGAAGTTCTACTGGGCGCCCA CCCGCGAGGACCGCATCGGCGTGTGCAAGGGCATCTTCCGCACCGACAACGTCCCGGACG AGGCCGTGGTGAGGCTGGTGGACACCTTCCCGGGGCAGTCCATCGACTTCTTCGGCGCGC TGCGGGCACGGGTGTACGACGACGAGGTGCGCAAGTGGGTCGGCGAGATCGGCGTGGAGA ACATCTCCAAGCGCCTCGTCAACTCCAGGGAGGGGCCGCCCACGTTCGACCAGCCCAAGA TGACCATAGAGAAGCTCATGGAGTACGGCCACATGCTGGTCCAGGAGCAGGAGAACGTCA AGCGTGTGCAGCTCGCCGACAAGTACCTCAGCGAGGCGGCGCTCGGCCAAGCCAACGACG ACGCCATGAAGACCGGTGCCTTCTACGGCAAGTAGAAGGTCCTACTCTACTTAAGATGCA TGCATGCACTATATATATGTTGGACTATTTTGGACCCGAAATCCACTCAAACTTTTTGAT TCATCGCCGCACAGGTAACCCAATTGTAAGTCTCTTCTTGAAAGAGAAAGGAATTGTATA TGTTCTTAAATCGTCATTTTCCGCTTAATCATTTCTCCAATGGATGCAAGCTAGGGTCCC AAGTCCCAACAACCTATATATCTCTTGATATTAGCACTTGTCGGAAGATTAGCACATATG TGGAAATCATCTGAAGCTTGTTGATTAGGTACGAGTACTGTGGATGTGGGGGGTCATGAC TCATCACATACATACATATTTTCCCTTTGACGGATTACGGAAACCCCAATTTGCACCACA AAGTTGATTAACAAGGACAACATCACTAGAAGGTGTATTGGACAAAGATTGTGCGAGCCA AACGGCTCGCATTCATCGTAATGATCAATTAATGGTCTGTACTAGACCCAAACAATGAGA ATACCAGCAGGGAACTTGAGCTAGGCAACACGAATTACATTTACATGAAAACATTAGACA CGTTCTATAATCTTTTCATCAAAGCAAAACTGCATGGCTACCTTTTCTCTTAATACGCTT CATTTTTTTTTACCGAAGTGGCAATATTTATTGGAGTAGACAAAAGTACAAACCCATGTG CTTGATGTCAACCAGGACTTGATTTGTGTGGTGCCAAATGACATCCCTAGCTTGATGGTT ATCAACAAACCAGTATATGTATGGCAGCAACAAATTTGTGGTACTTGGAACTAGAATACA ATCTTGGGTGCCTCATCCAACAAGCAACGAGAGACCCTTTTTTTGTGGTTATGCAATGAC ATGGCTTGGCTAATAAACAAGATAGTATATACGGGCGACCGAGTGAAAGGAAAAAATGAA AGGCACGGAAGAAATGGGAGATGATTTGAGCATGAATGGTTAGATTCTGTGGCCGTGGAA GGCCATGGAATTGATGGCCAGCAGACGTATCTGCAGCTGCAGCTGCAGCGTTTGGTCTTG ACGGTCCAAGTCATCCAACCGGCCGGCCAAGACGCTCAGAACCCAATCTCCAGCGTGTGG CCTCTGGGGGATCGGGAGGCTGATCCACAAGCAGGGGTGTGTGTATGCCGCCTCCTCCTC CAAGCTCCCCACAGCAGAGCAGCAATATGCCAATCCACGTGTATTTAAGGCGTCACATAG CTCGGCCTCTATACTTTGAGCAGCAGCAGTCATTCATCACTGATCACCAGCACAGCCGCG CGCATCCACCGTTGCTAGCAAGGTCGACCAAGCAGCACAGAGATGGCTGCTGCCTTCTCC TCCACCGTCGGGGCTCCGGTGCGTACCACACACTGATCGATCGATTGATTGATTGCATCT CTTGCTTAGTGATGATATCCTATCAGTGTCTTCAGCGGCATCTCATGTGTGTATATGTAA TGTAATGTAATGTATACAGGCTTCTACGCCGACCAACTTCCTCGGGAAGAAGCTCAAGAA GCAGGTGACCTCGGCCGTGAACTACCATGGCAAGAGCTCCAAGGCCAACAGGTTCACAGT CATGGCAGCGGAGAACATCGACGAGAAGAGGAACACCGACAAGTGGAAGGGTCTTGCGTA CGATATCTCCGACGACCAGCAGGACATCACCAGAGGGAAGGGCATCGTGGACTCGCTCTT CCAGGCGCCCACGGGCGACGGCACCCACGAGGCCGTCCTCAGCTCCTACGAGTACGTCAG CCAGGGCCTGCGGAAGTACGACTTCGACAACACCATGGGAGGCTTCTACATCGCTCCTGC TTTCATGGACAAGCTTGTTGTCCATCTCTCCAAAAACTTCATGACCCTGCCCAACATCAA GAAGCAGCAATAAAATGAATCATTCTGATTCTGAAACTGACCTTGAATCGAAATTCAGAT CCCACTCATCTTGGGTATCTGGGGAGGCAAGGGTCAAGGAAAATCATTCCAGTGTGAGCT TGTGTTCGCCAAGATGGGCATCAACCCCATCATGATGAGTGCCGGAGAGCTGGAGAGTGG GAACGCTGGAGAGCCAGCCAAGCTCATCAGGCAGCGGTACCGTGAGGCTGCAGACATGAT CAAGAAGGGTAAGATGTGCTGCCTCTTCATCAACGATCTTGACGCTGGTGCGGGTAGGAT GGGCGGAACCACGCAGTACACCGTCAACAACCAGATGGTGAACGCCACCCTGATGAACAT CGCCGATGCCCCCACCAACGTGCAGCTCCCTGGCATGTACAACAAGGAGGAGAACCCCCG TGTGCCCATCGTCGTCACCGGTAACGATTTCTCGACGCTCTACGCTCCTCTGATCCGTGA TGGTCGTATGGAGAAGTTCTACTGGGCTCCCACCCGTGACGACCGTATCGGTGTCTGCAA GGGTATCTTCCAGACCGACAATGTCAGTGACGAGTCTGTCGTCAAGATCGTCGACACCTT CCCAGGACAATCCATTGACTTTTTCGGTGCTCTGCGTGCTCGGGTGTACGACGATGAGGT GCGCAAGTGGGTCGGCTCTACCGGAATCGAGAACATTGGCAAGAGGCTGGTGAACTCGCG GGACGGGCCCGTGACCTTCGAGCAGCCAAAGATGACAGTCGAGAAGCTGCTAGAGTACGG GCACATGCTCGTCCAGGAGCAGGACAATGTCAAGCGTGTGCAGCTTGCTGACACCTACAT GAGCCAGGCAGCTCTGGGTGATGCTAACCAGGATGCGATGAAGACTGGTTCCTTCTACGG TTAGAAAATTCTCCATACACACCCACCATCTCTTGCTGCATAGGAGGAGGTAAAGGAGCA CAGCAAGGTACTTTGCCCGTGCCGGAAGGTTGCACCGACCAAAATGCCAAGAACTACGAC CCAACGGCAAGGAGCGACGACGGCAGCTGCCTTTACACCTTTTAAGCATGCCACTTTTAA TATCTGATGTTTTACCTACCTAAGTCCGCATCGCATCCAAGCGATTGCTGGGCATGTTTT GTTAATATATCTCTAAATATATTGAGTATACCCATTTGGCAAAGACCAATACACCTACTT ATCATTTGTCACTCTCAGTATTCATTCCTTCAGTGGAGACTCCTTCTGCTTTGTTGCAAA CAGAACAAGAAAGTATTAATTTGAGCTTCAGCTTATTAATTATTATTGCACAAACGCATG GAAACTGAGAGTCAATTGCGATCATGCGATACATACAGCGTGTAATTTTAGCCCTGATGT TCCAACGTCCAAATTAGATCCCCAAAACTAAACGTCATTTAAGCTTAGAAAGACAAACAG AAAGGAGCAGTTGTTTCAAATGATTGCTGTGGAGAACTACATCCTTAATAAGCAGCTGCA TCATGATGTGGTTCCCTAAGAGCATCTCCAGCCGTTCGATCTTCC
Protein Sequence (426 aa)
>BART1_0-u27957.016 426 150831_barley_pseudomolecules MASAFSSTVGAPASTPTIFLGKKVKNYYHGGNKMKSRVVRVMAAKKELDQGKQTDADRWK GLAYDISDDQQDITRGKGIVDSLFQAPMGDGTHEAILSSYEYISQGLRKYDFDNTMDGLY IAPAFMDKLIVHLAKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAG ELESGNAGEPAKLIRQRYREAADIINKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNA TLMNIADAPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDR IGVCKGIFRTDNVPDEAVVRLVDTFPGQSIDFFGALRARVYDDEVRKWVGEIGVENISKR LVNSREGPPTFDQPKMTIEKLMEYGHMLVQEQENVKRVQLADKYLSEAALGQANDDAMKT GAFYGK