Gene Data
Barley RTD
Links



Matching HORVU genes

BarleyRTD transcripts were compared to the location of the IBSC 2017 Predicted Transcripts. Overlapping status is classified as Containing (HORVU is smaller than the BART), Contained (BART is smaller than the HORVU), Partial-Overlap (Overlap exists), and Undefined (the BART transcript has no overlapping HORVU).

HORVU IDPercentage overlapBART Gene DirectionHORVU Gene DirectionOverlap LengthGene Length DifferenceOverlapping Status
HORVU4Hr1G02726088.9--7872-987Containing




Transcripts from Gene BART1_0-u27957

TranscriptLength(bp)Description
BART1_0-u27957.00156725672 bp MSTRG.27957.1 MSTRG.27957
BART1_0-u27957.00230583058 bp MSTRG.27957.2 MSTRG.27957
BART1_0-u27957.00329492949 bp MSTRG.27957.3 MSTRG.27957
BART1_0-u27957.00456225622 bp MSTRG.27957.4 MSTRG.27957
BART1_0-u27957.00572537253 bp MSTRG.27957.5 MSTRG.27957
BART1_0-u27957.00650545054 bp MSTRG.27957.6 MSTRG.27957
BART1_0-u27957.00772507250 bp MSTRG.27957.7 MSTRG.27957
BART1_0-u27957.00826702670 bp MSTRG.27957.8 MSTRG.27957
BART1_0-u27957.00973307330 bp MSTRG.27957.9 MSTRG.27957
BART1_0-u27957.01043504350 bp MSTRG.27957.10 MSTRG.27957
BART1_0-u27957.01124512451 bp MSTRG.27957.11 MSTRG.27957
BART1_0-u27957.01225132513 bp MSTRG.27957.12 MSTRG.27957
BART1_0-u27957.01369616961 bp MSTRG.27957.13 MSTRG.27957
BART1_0-u27957.01443204320 bp MSTRG.27957.14 MSTRG.27957
BART1_0-u27957.01523012301 bp MSTRG.27957.15 MSTRG.27957
BART1_0-u27957.01650855085 bp MSTRG.27957.16 MSTRG.27957
BART1_0-u27957.01748684868 bp MSTRG.27957.17 MSTRG.27957
BART1_0-u27957.01821862186 bp MSTRG.27957.18 MSTRG.27957
BART1_0-u27957.01922422242 bp MSTRG.27957.19 MSTRG.27957
BART1_0-u27957.02052605260 bp MSTRG.27957.20 MSTRG.27957
BART1_0-u27957.021948948 bp MSTRG.27957.21 MSTRG.27957
BART1_0-u27957.02239193919 bp MSTRG.27957.22 MSTRG.27957
BART1_0-u27957.02339383938 bp MSTRG.27957.23 MSTRG.27957
BART1_0-u27957.02423762376 bp MSTRG.27957.24 MSTRG.27957
BART1_0-u27957.025974974 bp MSTRG.27957.25 MSTRG.27957



Exon Structure of BART1_0-u27957


grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-30)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP7 LOC_Os11g47970.1 +1 0.0 760 375/438 (86%) protein|AAA-type ATPase family protein, putative, expressed
TAIR PP10 AT2G39730 @ ARAPORT
AT2G39730.3 @ TAIR		 +2 0.0 699 339/435 (78%) Symbols: RCA | rubisco activase | chr2:16571174-16573345 REVERSE LENGTH=441
BRACH PP3 Bradi4g09125.1.p +1 0.0 789 388/437 (89%) pacid=32783475 transcript=Bradi4g09125.1 locus=Bradi4g09125 ID=Bradi4g09125.1.v3.1 annot-version=v3.1




GO Annotation

Generated by PANNZER

GO IDGO terms
GO:0009570chloroplast stroma
GO:0016887ATPase activity
GO:0010150leaf senescence
GO:0009941chloroplast envelope
GO:0009753response to jasmonic acid
GO:0046863ribulose-1,5-bisphosphate carboxylase/oxygenase activator activity
GO:0043531ADP binding
GO:0042742defense response to bacterium
GO:0009416response to light stimulus
GO:0044435plastid part
GO:0009579thylakoid
GO:0005524ATP binding
GO:0004633phosphopantothenoylcysteine decarboxylase activity
GO:0009409response to cold
GO:0005634nucleus
GO:0009408response to heat
GO:0009507chloroplast
GO:0043085positive regulation of catalytic activity
GO:0016020membrane
GO:0010319stromule
GO:0048046apoplast
GO:0005618cell wall
GO:0031984organelle subcompartment
GO:0016787hydrolase activity



Barley PseudoMolecules GBrowse

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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons