- Transcript BART1_0-u27957.015
- Transcript IDBART1_0-u27957.015
- Gene IDBART1_0-u27957
Barley RTD
Exon Structure of BART1_0-u27957.015
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr4H | 1 | 166877905 | 166877310 | - |
| chr4H | 2 | 166878435 | 166878131 | - |
| chr4H | 3 | 166878985 | 166878513 | - |
| chr4H | 4 | 166879379 | 166879237 | - |
| chr4H | 5 | 166880595 | 166879812 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 0 | 0 | 0 |
| morex | ETI | 0 | 0 | 0 |
| morex | LEA | 0 | 0 | 0 |
| morex | EPI | 0 | 0 | 0 |
| morex | ROO | 0 | 0 | 0 |
| morex | ROO2 | 0 | 0 | 0 |
| morex | NOD | 0 | 0 | 0 |
| morex | RAC | 0 | 0 | 0 |
| morex | INF1 | 0 | 0 | 0 |
| morex | INF2 | 0 | 0 | 0 |
| morex | CAR5 | 0 | 0 | 0 |
| morex | CAR15 | 0 | 0 | 0 |
| morex | LEM | 0 | 0 | 0 |
| morex | LOD | 0 | 0 | 0 |
| morex | PAL | 0 | 0 | 0 |
| morex | SEN | 0 | 0 | 0 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os11g47970.1 | +2 | 0.0 | 590 | 295/342 (86%) | protein|AAA-type ATPase family protein, putative, expressed |
| TAIR PP10 | AT2G39730 @ ARAPORT AT2G39730.3 @ TAIR |
+2 | 0.0 | 507 | 253/340 (74%) | Symbols: RCA | rubisco activase | chr2:16571174-16573345 REVERSE LENGTH=441 |
| BRACH PP3 | Bradi4g09125.1.p | +2 | 0.0 | 604 | 300/341 (88%) | pacid=32783475 transcript=Bradi4g09125.1 locus=Bradi4g09125 ID=Bradi4g09125.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (2301 bp)
>BART1_0-u27957.015 2301 150831_barley_pseudomolecules TGGCCTCTGGGGGATCGGGAGGCTGATCCACAAGCAGGGGTGTGTGTATGCCGCCTCCTC CTCCAAGCTCCCCACAGCAGAGCAGCAATATGCCAATCCACGTGTATTTAAGGCGTCACA TAGCTCGGCCTCTATACTTTGAGCAGCAGCAGTCATTCATCACTGATCACCAGCACAGCC GCGCGCATCCACCGTTGCTAGCAAGGTCGACCAAGCAGCACAGAGATGGCTGCTGCCTTC TCCTCCACCGTCGGGGCTCCGGTGCGTACCACACACTGATCGATCGATTGATTGATTGCA TCTCTTGCTTAGTGATGATATCCTATCAGTGTCTTCAGCGGCATCTCATGTGTGTATATG TAATGTAATGTAATGTATACAGGCTTCTACGCCGACCAACTTCCTCGGGAAGAAGCTCAA GAAGCAGGTGACCTCGGCCGTGAACTACCATGGCAAGAGCTCCAAGGCCAACAGGTTCAC AGTCATGGCAGCGGAGAACATCGACGAGAAGAGGAACACCGACAAGTGGAAGGGTCTTGC GTACGATATCTCCGACGACCAGCAGGACATCACCAGAGGGAAGGGCATCGTGGACTCGCT CTTCCAGGCGCCCACGGGCGACGGCACCCACGAGGCCGTCCTCAGCTCCTACGAGTACGT CAGCCAGGGCCTGCGGAAGTACGACTTCGACAACACCATGGGAGGCTTCTACATCGCTCC TGCTTTCATGGACAAGCTTGTTGTCCATCTCTCCAAAAACTTCATGACCCTGCCCAACAT CAAGAAGCAGCAATAAAATGAATCATTCTGATTCTGAAACTGACCTTGAATCGAAATTCA GATCCCACTCATCTTGGGTATCTGGGGAGGCAAGGGTCAAGGAAAATCATTCCAGTGTGA GCTTGTGTTCGCCAAGATGGGCATCAACCCCATCATGATGAGTGCCGGAGAGCTGGAGAG TGGGAACGCTGGAGAGCCAGCCAAGCTCATCAGGCAGCGGTACCGTGAGGCTGCAGACAT GATCAAGAAGGGTAAGATGTGCTGCCTCTTCATCAACGATCTTGACGCTGGTGCGGGTAG GATGGGCGGAACCACGCAGTACACCGTCAACAACCAGATGGTGAACGCCACCCTGATGAA CATCGCCGATGCCCCCACCAACGTGCAGCTCCCTGGCATGTACAACAAGGAGGAGAACCC CCGTGTGCCCATCGTCGTCACCGGTAACGATTTCTCGACGCTCTACGCTCCTCTGATCCG TGATGGTCGTATGGAGAAGTTCTACTGGGCTCCCACCCGTGACGACCGTATCGGTGTCTG CAAGGGTATCTTCCAGACCGACAATGTCAGTGACGAGTCTGTCGTCAAGATCGTCGACAC CTTCCCAGGACAATCCATTGTATCATGCATCGATCCGATACAGACTTTTTCGGTGCTCTG CGTGCTCGGGTGTACGACGATGAGGTGCGCAAGTGGGTCGGCTCTACCGGAATCGAGAAC ATTGGCAAGAGGCTGGTGAACTCGCGGGACGGGCCCGTGACCTTCGAGCAGCCAAAGATG ACAGTCGAGAAGCTGCTAGAGTACGGGCACATGCTCGTCCAGGAGCAGGACAATGTCAAG CGTGTGCAGCTTGCTGACACCTACATGAGCCAGGCAGCTCTGGGTGATGCTAACCAGGAT GCGATGAAGACTGGTTCCTTCTACGGTAAAGGAGCACAGCAAGGTACTTTGCCCGTGCCG GAAGGTTGCACCGACCAAAATGCCAAGAACTACGACCCAACGGCAAGGAGCGACGACGGC AGCTGCCTTTACACCTTTTAAGCATGCCACTTTTAATATCTGATGTTTTACCTACCTAAG TCCGCATCGCATCCAAGCGATTGCTGGGCATGTTTTGTTAATATATCTCTAAATATATTG AGTATACCCATTTGGCAAAGACCAATACACCTACTTATCATTTGTCACTCTCAGTATTCA TTCCTTCAGTGGAGACTCCTTCTGCTTTGTTGCAAACAGAACAAGAAAGTATTAATTTGA GCTTCAGCTTATTAATTATTATTGCACAAACGCATGGAAACTGAGAGTCAATTGCGATCA TGCGATACATACAGCGTGTAATTTTAGCCCTGATGTTCCAACGTCCAAATTAGATCCCCA AAACTAAACGTCATTTAAGCTTAGAAAGACAAACAGAAAGGAGCAGTTGTTTCAAATGAT TGCTGTGGAGAACTACATCCTTAATAAGCAGCTGCATCATGATGTGGTTCCCTAAGAGCA TCTCCAGCCGTTCGATCTTCC
Protein Sequence (138 aa)
>BART1_0-u27957.015 138 150831_barley_pseudomolecules MHRSDTDFFGALRARVYDDEVRKWVGSTGIENIGKRLVNSRDGPVTFEQPKMTVEKLLEY GHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFYGKGAQQGTLPVPEGCTDQNA KNYDPTARSDDGSCLYTF