- Transcript BART1_0-u27957.014
- Transcript IDBART1_0-u27957.014
- Gene IDBART1_0-u27957
Barley RTD
Exon Structure of BART1_0-u27957.014
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr4H | 1 | 166877994 | 166877310 | - |
| chr4H | 2 | 166878371 | 166878081 | - |
| chr4H | 3 | 166885290 | 166881947 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 0.0177548 | 0 | 0 |
| morex | ETI | 0.0000000162291 | 0.000000000753053 | 0 |
| morex | LEA | 0.921392 | 1.06122 | 0.22301 |
| morex | EPI | 0.627759 | 0.354739 | 0.359236 |
| morex | ROO | 0 | 0 | 0 |
| morex | ROO2 | 12.2289 | 0 | 0 |
| morex | NOD | 0 | 0 | 0.140453 |
| morex | RAC | 0 | 0 | 0 |
| morex | INF1 | 7.87256 | 4.71659 | 0 |
| morex | INF2 | 8.76884 | 0 | 10.4036 |
| morex | CAR5 | 0.513713 | 1.01142 | 0 |
| morex | CAR15 | 0 | 0 | 0 |
| morex | LEM | 0.0938957 | 0.0745494 | 0 |
| morex | LOD | 9.81403 | 20.1374 | 21.7632 |
| morex | PAL | 0 | 0 | 0 |
| morex | SEN | 1.8661 | 0.549194 | 0.682651 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os11g47970.1 | +3 | 0.0 | 752 | 359/421 (85%) | protein|AAA-type ATPase family protein, putative, expressed |
| TAIR PP10 | AT2G39730 @ ARAPORT AT2G39730.2 @ TAIR |
+3 | 0.0 | 699 | 337/431 (78%) | Symbols: RCA | rubisco activase | chr2:16571046-16573345 REVERSE LENGTH=446 |
| BRACH PP3 | Bradi4g09125.1.p | +3 | 0.0 | 771 | 370/420 (88%) | pacid=32783475 transcript=Bradi4g09125.1 locus=Bradi4g09125 ID=Bradi4g09125.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (4320 bp)
>BART1_0-u27957.014 4320 150831_barley_pseudomolecules GCCAAGCTCCATCGATCGGCATCGCATCTGTACCTGCTAACCACTGCACCCCTCTCTTTT ATCCATATCAGCTCCATCCATCACTGACGATCGATCTCAGTCCACCTGCATCTGTAGGTG TACTAGTAGTACGCCGGCCTAATCCAGCTGAGAGCTGATCGAGCTAGCTTGCATATACCA CTGCACGTACGCACATCAAATTAATTAGAAACTACTGTAATTAAGTTATCAGCAGCGAGA AGAGAACGATCGATCAACACCATGGCTTCTGCTTTCTCGTCCACCGTTGGAGCTCCGGTA CGTATGACCTACACTTCCACGTACACTCGTGGTTCCTAATCCTTAATTCAGTGGACACAA CGTGTGTACGACAAAAAGAAAACTCACCGTCTCTCTAAATTAATTGACAGAGTTGCTACA CATTTTCAGGTCTGAATTGTTTCATTTTGTACAGTTTTTAATATAATTTGTGACCGTGTG ATCTTGCTTTGAGATTCGGACGCGACAAGCTGGGCCTCCTCTCTATGTGTTGACTCCGAC AAGGGCATCTCTTTCCTCACCCATGCCTTCCGGGGCTTAAAAAGACTGTCTATGGTCAGC CTGAGCGTTCGGGTATTTTGGTTATTTCGGTTCATGTGTAATTCGGGTATTAAAAAAATG GGAATCGGAATTTTTTATGTCAAAAAAATAACCGAACCCAAATTACCCAAAATTTTGGTT TGGGTAACTCGGGTACCCAAAAAACCCAAAATATTCAGAGCACACATTAAGTTTCGGCAT GAATAATTCAGATAGTGTGGGTGTTTTAGTTAGTTTGTGTAACATGTAAGTGTAATAATA ACATAAATAATTTGACTAGTATGAATAATTCGGGTAGTATGGGTATTTTGGGTTTTACAG ACTAGAACCTGAACCCTAACCCGAAAACCGAATAGCCAGGAAATGAGAACCAAACCTTAA CCCGATACCCATATTACCCGACAATTCGGGTATTTTGGTTCAGTTCGGGTTTGGGTAGCG GGTTAGGGTATCCAAACTCTCGGGTGAGTCTAGGGTGATGGGGTGGGCAGCGGATGGCTA GCCACCATGGGGCGAAGGCTATCAAATGAGGTCATTTGATCTCGGTTTGGGCATGACCTT GAATATTGAGTTAGCACGATAAAGATAATTTAGGCAATACTAATGGTTGTTTCATGATGG CGCGGATGAGAATGAACGGGAGGTGGTAGCGAGATTTTATTTAGGAGCAACTATTGTGAG GTTTATTAAATCACGATGCAAATTACAAATAGGGCGAGGTGAGGGTGGTGACGGGGAGTG TTGAGAAATGTGGGAAGCTAATGGTTACACTTTTTCGAAGCTATTGCGTGGAGGAGGAAG GGAAAGATAGAACCTCAAAAGTCTCGAGTGGAGGCACACGGTTGTCAAGCCCGTGTGTGA GAATNATAATATTAGAAACTAACTAGTGAAGTATGCTTCTCCTCATTCTTCATTAGTAAG AACTTTTGGCTGAATTAGTTACTCCCTCCGTCTCAGTGTATAGGTCATATTAGGTTGTGC ATCGTGATCAAAACGGAGAGGAAAACAAAAAAATATATTAATTTGCTAATTAATATCATT GCATGTAATGAATTAACCACTGCATGTCGTGCTAGTTAGTCGCAAGTCATTAAAAACATA CACGTTCCATGTCTCTTATTGGTTGATTCCTTTATCCATGTAAAAAAAAACAAAAAACAA GCAGAAAATTAATGCATCGTGCCTAAGTGTTTTGAGATTTTTTTTTCATAAGATGACTTA TAAACCAAGACGGAGGGAGTAGGTTGTTTTGTAATTCAATATGTCATTCAAGCCATGGGG CATCAACTTCAAGGCCCAGCATGCCGGGACGGGACGGATCTAAAAACTATTTTGACTCGT GGCAAAACATCATTAAAATAAGGGAGGTAAATGATGGAGAGTAACAAAAACGATTTAAGA GTGGTGTCACATTTTATCCAAATTCATTGAGTTTTAGCATTTCCTCCTAAAAGTTATTCA AATCGTATTGAAATTTCATATTTTGAGTAGGGTCCTAGGCCCCCACTCTCTTCAACACGG GCCCACCACTTCTGGTATTGTACCTTTGACCTTCCGCCCCTGTTCATCAGCTGGAGCTTT TGGATGGACTAATTAATTCTATATATATGCGGATGCAATTGAATAGCGAGTGAAGTCTGG AACTGCCCAAATGAAGGGTTGATATCTGCAAATTAAGCGTTCATCGTGGCAATTGCTATT GAAAGCAAGCAGCAAGTGAACCAACGTGCATGAATGTGATTGGGGCTGACTATGTCATAC TTGTGCAGGCGTCGACCCCGACCATCTTCCTGGGCAAGAAGGTGAAGAACTACTACCATG GTGGCAACAAGATGAAGAGCAGGGTGGTGAGGGTCATGGCGGCCAAAAAGGAACTTGACC AGGGCAAGCAGACCGATGCGGACCGGTGGAAGGGTCTGGCCTACGACATCTCGGACGACC AGCAGGACATCACTCGGGGGAAAGGCATCGTGGACTCCCTGTTCCAGGCCCCCATGGGCG ACGGCACCCACGAGGCCATCCTAAGCTCCTACGAGTACATCAGCCAGGGCCTGCGGAAGT ACGACTTCGACAACACCATGGACGGGCTGTACATCGCGCCGGCATTCATGGACAAGCTCA TCGTCCACCTCGCCAAGAACTTCATGACACTCCCCAACATCAAGGTTCCTCTCATCCTGG GTATCTGGGGAGGCAAGGGACAGGGCAAGTCGTTCCAGTGTGAGCTGGTGTTCGCCAAGA TGGGCATCAACCCCATCATGATGAGCGCCGGTGAGCTGGAGAGCGGCAACGCCGGCGAGC CGGCCAAGCTGATCCGGCAGAGGTACCGCGAGGCGGCCGACATTATCAACAAGGGCAAGA TGTGCTGCCTCTTCATCAACGACCTGGACGCCGGCGCGGGCCGGATGGGCGGGACGACGC AGTACACGGTGAACAACCAGATGGTGAACGCCACCCTGATGAACATCGCGGACGCGCCCA CCAACGTGCAGCTCCCGGGGATGTACAACAAGGAGGAGAACCCCCGCGTGCCCATCATCG TCACCGGCAACGACTTCTCGACGCTGTACGCTCCCCTGATCCGTGACGGGCGCATGGAGA AGTTCTACTGGGCGCCCACCCGCGAGGACCGCATCGGCGTGTGCAAGGGCATCTTCCGCA CCGACAACGTCCCGGACGAGGCCGTGGTGAGGCTGGTGGACACCTTCCCGGGGCAGTCCA TCGACTTCTTCGGCGCGCTGCGGGCACGGGTGTACGACGACGAGGTGCGCAAGTGGGTCG GCTCTACCGGAATCGAGAACATTGGCAAGAGGCTGGTGAACTCGCGGGACGGGCCCGTGA CCTTCGAGCAGCCAAAGATGACAGTCGAGAAGCTGCTAGAGTACGGGCACATGCTCGTCC AGGAGCAGGACAATGTCAAGCGTGTGCAGCTTGCTGACACCTACATGAGCCAGGCAGCTC TGGGTGATGCTAACCAGGATGCGATGAAGACTGGTTCCTTCTACGGTTAGAAAATTCTCC ATACACACCCACCATCTCTTGCTGCATAGGAGGAGGGAGTGGAGGCCTGTTTTTCTTACC TGCTCTTCCGCCGGCATATCAAGCTCATCTTCTCATCACGTCGTCCAAAACAATTAAATT GCAGGTAAAGGAGCACAGCAAGGTACTTTGCCCGTGCCGGAAGGTTGCACCGACCAAAAT GCCAAGAACTACGACCCAACGGCAAGGAGCGACGACGGCAGCTGCCTTTACACCTTTTAA GCATGCCACTTTTAATATCTGATGTTTTACCTACCTAAGTCCGCATCGCATCCAAGCGAT TGCTGGGCATGTTTTGTTAATATATCTCTAAATATATTGAGTATACCCATTTGGCAAAGA CCAATACACCTACTTATCATTTGTCACTCTCAGTATTCATTCCTTCAGTGGAGACTCCTT CTGCTTTGTTGCAAACAGAACAAGAAAGTATTAATTTGAGCTTCAGCTTATTAATTATTA TTGCACAAACGCATGGAAACTGAGAGTCAATTGCGATCATGCGATACATACAGCGTGTAA TTTTAGCCCTGATGTTCCAACGTCCAAATTAGATCCCCAAAACTAAACGTCATTTAAGCT TAGAAAGACAAACAGAAAGGAGCAGTTGTTTCAAATGATTGCTGTGGAGAACTACATCCT TAATAAGCAGCTGCATCATGATGTGGTTCCCTAAGAGCATCTCCAGCCGTTCGATCTTCC
Protein Sequence (426 aa)
>BART1_0-u27957.014 426 150831_barley_pseudomolecules MNVIGADYVILVQASTPTIFLGKKVKNYYHGGNKMKSRVVRVMAAKKELDQGKQTDADRW KGLAYDISDDQQDITRGKGIVDSLFQAPMGDGTHEAILSSYEYISQGLRKYDFDNTMDGL YIAPAFMDKLIVHLAKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSA GELESGNAGEPAKLIRQRYREAADIINKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVN ATLMNIADAPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRED RIGVCKGIFRTDNVPDEAVVRLVDTFPGQSIDFFGALRARVYDDEVRKWVGSTGIENIGK RLVNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMK TGSFYG