- Transcript BART1_0-u27957.013
- Transcript IDBART1_0-u27957.013
- Gene IDBART1_0-u27957
Barley RTD
Exon Structure of BART1_0-u27957.013
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr4H | 1 | 166877905 | 166877307 | - |
| chr4H | 2 | 166878412 | 166878131 | - |
| chr4H | 3 | 166878985 | 166878513 | - |
| chr4H | 4 | 166879382 | 166879237 | - |
| chr4H | 5 | 166880213 | 166879812 | - |
| chr4H | 6 | 166885393 | 166880335 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 0 | 0 | 0 |
| morex | ETI | 33.4675 | 29.7702 | 10.3402 |
| morex | LEA | 1.04797 | 0.819322 | 0.0169087 |
| morex | EPI | 0.0651986 | 0.0521017 | 0.18355 |
| morex | ROO | 0.0826414 | 0.0672608 | 0 |
| morex | ROO2 | 0 | 0 | 0 |
| morex | NOD | 0 | 0 | 0 |
| morex | RAC | 0 | 0 | 0 |
| morex | INF1 | 0 | 0 | 0 |
| morex | INF2 | 0 | 0 | 0 |
| morex | CAR5 | 0.499112 | 1.3149 | 0.93943 |
| morex | CAR15 | 0.17538 | 0.000000105278 | 0.0566987 |
| morex | LEM | 0.0765167 | 0.0161502 | 0 |
| morex | LOD | 0 | 0 | 0 |
| morex | PAL | 0 | 0 | 0 |
| morex | SEN | 2.64882 | 0.750644 | 0.0841316 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os11g47970.1 | +2 | 0.0 | 758 | 374/437 (86%) | protein|AAA-type ATPase family protein, putative, expressed |
| TAIR PP10 | AT2G39730 @ ARAPORT AT2G39730.1 @ TAIR |
+2 | 0.0 | 727 | 362/480 (75%) | Symbols: RCA | rubisco activase | chr2:16570951-16573345 REVERSE LENGTH=474 |
| BRACH PP3 | Bradi4g09125.2.p | +2 | 0.0 | 882 | 432/487 (89%) | pacid=32783473 transcript=Bradi4g09125.2 locus=Bradi4g09125 ID=Bradi4g09125.2.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (6961 bp)
>BART1_0-u27957.013 6961 150831_barley_pseudomolecules CGCAGGGACGCTCTAGAATAGTCTCTCACGCTCTAGGTCACTCCAGTCGTGTTGGACGCT TGCTCCATGGCCATCTGTCCATGCACCTATATAAGACGCCATGGCCAAGCTCCATCGATC GGCATCGCATCTGTACCTGCTAACCACTGCACCCCTCTCTTTTATCCATATCAGCTCCAT CCATCACTGACGATCGATCTCAGTCCACCTGCATCTGTAGGTGTACTAGTAGTACGCCGG CCTAATCCAGCTGAGAGCTGATCGAGCTAGCTTGCATATACCACTGCACGTACGCACATC AAATTAATTAGAAACTACTGTAATTAAGTTATCAGCAGCGAGAAGAGAACGATCGATCAA CACCATGGCTTCTGCTTTCTCGTCCACCGTTGGAGCTCCGGTACGTATGACCTACACTTC CACGTACACTCGTGGTTCCTAATCCTTAATTCAGTGGACACAACGTGTGTACGACAAAAA GAAAACTCACCGTCTCTCTAAATTAATTGACAGAGTTGCTACACATTTTCAGGTCTGAAT TGTTTCATTTTGTACAGTTTTTAATATAATTTGTGACCGTGTGATCTTGCTTTGAGATTC GGACGCGACAAGCTGGGCCTCCTCTCTATGTGTTGACTCCGACAAGGGCATCTCTTTCCT CACCCATGCCTTCCGGGGCTTAAAAAGACTGTCTATGGTCAGCCTGAGCGTTCGGGTATT TTGGTTATTTCGGTTCATGTGTAATTCGGGTATTAAAAAAATGGGAATCGGAATTTTTTA TGTCAAAAAAATAACCGAACCCAAATTACCCAAAATTTTGGTTTGGGTAACTCGGGTACC CAAAAAACCCAAAATATTCAGAGCACACATTAAGTTTCGGCATGAATAATTCAGATAGTG TGGGTGTTTTAGTTAGTTTGTGTAACATGTAAGTGTAATAATAACATAAATAATTTGACT AGTATGAATAATTCGGGTAGTATGGGTATTTTGGGTTTTACAGACTAGAACCTGAACCCT AACCCGAAAACCGAATAGCCAGGAAATGAGAACCAAACCTTAACCCGATACCCATATTAC CCGACAATTCGGGTATTTTGGTTCAGTTCGGGTTTGGGTAGCGGGTTAGGGTATCCAAAC TCTCGGGTGAGTCTAGGGTGATGGGGTGGGCAGCGGATGGCTAGCCACCATGGGGCGAAG GCTATCAAATGAGGTCATTTGATCTCGGTTTGGGCATGACCTTGAATATTGAGTTAGCAC GATAAAGATAATTTAGGCAATACTAATGGTTGTTTCATGATGGCGCGGATGAGAATGAAC GGGAGGTGGTAGCGAGATTTTATTTAGGAGCAACTATTGTGAGGTTTATTAAATCACGAT GCAAATTACAAATAGGGCGAGGTGAGGGTGGTGACGGGGAGTGTTGAGAAATGTGGGAAG CTAATGGTTACACTTTTTCGAAGCTATTGCGTGGAGGAGGAAGGGAAAGATAGAACCTCA AAAGTCTCGAGTGGAGGCACACGGTTGTCAAGCCCGTGTGTGAGAATNATAATATTAGAA ACTAACTAGTGAAGTATGCTTCTCCTCATTCTTCATTAGTAAGAACTTTTGGCTGAATTA GTTACTCCCTCCGTCTCAGTGTATAGGTCATATTAGGTTGTGCATCGTGATCAAAACGGA GAGGAAAACAAAAAAATATATTAATTTGCTAATTAATATCATTGCATGTAATGAATTAAC CACTGCATGTCGTGCTAGTTAGTCGCAAGTCATTAAAAACATACACGTTCCATGTCTCTT ATTGGTTGATTCCTTTATCCATGTAAAAAAAAACAAAAAACAAGCAGAAAATTAATGCAT CGTGCCTAAGTGTTTTGAGATTTTTTTTTCATAAGATGACTTATAAACCAAGACGGAGGG AGTAGGTTGTTTTGTAATTCAATATGTCATTCAAGCCATGGGGCATCAACTTCAAGGCCC AGCATGCCGGGACGGGACGGATCTAAAAACTATTTTGACTCGTGGCAAAACATCATTAAA ATAAGGGAGGTAAATGATGGAGAGTAACAAAAACGATTTAAGAGTGGTGTCACATTTTAT CCAAATTCATTGAGTTTTAGCATTTCCTCCTAAAAGTTATTCAAATCGTATTGAAATTTC ATATTTTGAGTAGGGTCCTAGGCCCCCACTCTCTTCAACACGGGCCCACCACTTCTGGTA TTGTACCTTTGACCTTCCGCCCCTGTTCATCAGCTGGAGCTTTTGGATGGACTAATTAAT TCTATATATATGCGGATGCAATTGAATAGCGAGTGAAGTCTGGAACTGCCCAAATGAAGG GTTGATATCTGCAAATTAAGCGTTCATCGTGGCAATTGCTATTGAAAGCAAGCAGCAAGT GAACCAACGTGCATGAATGTGATTGGGGCTGACTATGTCATACTTGTGCAGGCGTCGACC CCGACCATCTTCCTGGGCAAGAAGGTGAAGAACTACTACCATGGTGGCAACAAGATGAAG AGCAGGGTGGTGAGGGTCATGGCGGCCAAAAAGGAACTTGACCAGGGCAAGCAGACCGAT GCGGACCGGTGGAAGGGTCTGGCCTACGACATCTCGGACGACCAGCAGGACATCACTCGG GGGAAAGGCATCGTGGACTCCCTGTTCCAGGCCCCCATGGGCGACGGCACCCACGAGGCC ATCCTAAGCTCCTACGAGTACATCAGCCAGGGCCTGCGGAAGTACGACTTCGACAACACC ATGGACGGGCTGTACATCGCGCCGGCATTCATGGACAAGCTCATCGTCCACCTCGCCAAG AACTTCATGACACTCCCCAACATCAAGGTTCCTCTCATCCTGGGTATCTGGGGAGGCAAG GGACAGGGCAAGTCGTTCCAGTGTGAGCTGGTGTTCGCCAAGATGGGCATCAACCCCATC ATGATGAGCGCCGGTGAGCTGGAGAGCGGCAACGCCGGCGAGCCGGCCAAGCTGATCCGG CAGAGGTACCGCGAGGCGGCCGACATTATCAACAAGGGCAAGATGTGCTGCCTCTTCATC AACGACCTGGACGCCGGCGCGGGCCGGATGGGCGGGACGACGCAGTACACGGTGAACAAC CAGATGGTGAACGCCACCCTGATGAACATCGCGGACGCGCCCACCAACGTGCAGCTCCCG GGGATGTACAACAAGGAGGAGAACCCCCGCGTGCCCATCATCGTCACCGGCAACGACTTC TCGACGCTGTACGCTCCCCTGATCCGTGACGGGCGCATGGAGAAGTTCTACTGGGCGCCC ACCCGCGAGGACCGCATCGGCGTGTGCAAGGGCATCTTCCGCACCGACAACGTCCCGGAC GAGGCCGTGGTGAGGCTGGTGGACACCTTCCCGGGGCAGTCCATCGACTTCTTCGGCGCG CTGCGGGCACGGGTGTACGACGACGAGGTGCGCAAGTGGGTCGGCGAGATCGGCGTGGAG AACATCTCCAAGCGCCTCGTCAACTCCAGGGAGGGGCCGCCCACGTTCGACCAGCCCAAG ATGACCATAGAGAAGCTCATGGAGTACGGCCACATGCTGGTCCAGGAGCAGGAGAACGTC AAGCGTGTGCAGCTCGCCGACAAGTACCTCAGCGAGGCGGCGCTCGGCCAAGCCAACGAC GACGCCATGAAGACCGGTGCCTTCTACGGCAAGTAGAAGGTCCTACTCTACTTAAGATGC ATGCATGCACTATATATATGTTGGACTATTTTGGACCCGAAATCCACTCAAACTTTTTGA TTCATCGCCGCACAGGTAACCCAATTGTAAGTCTCTTCTTGAAAGAGAAAGGAATTGTAT ATGTTCTTAAATCGTCATTTTCCGCTTAATCATTTCTCCAATGGATGCAAGCTAGGGTCC CAAGTCCCAACAACCTATATATCTCTTGATATTAGCACTTGTCGGAAGATTAGCACATAT GTGGAAATCATCTGAAGCTTGTTGATTAGGTACGAGTACTGTGGATGTGGGGGGTCATGA CTCATCACATACATACATATTTTCCCTTTGACGGATTACGGAAACCCCAATTTGCACCAC AAAGTTGATTAACAAGGACAACATCACTAGAAGGTGTATTGGACAAAGATTGTGCGAGCC AAACGGCTCGCATTCATCGTAATGATCAATTAATGGTCTGTACTAGACCCAAACAATGAG AATACCAGCAGGGAACTTGAGCTAGGCAACACGAATTACATTTACATGAAAACATTAGAC ACGTTCTATAATCTTTTCATCAAAGCAAAACTGCATGGCTACCTTTTCTCTTAATACGCT TCATTTTTTTTTACCGAAGTGGCAATATTTATTGGAGTAGACAAAAGTACAAACCCATGT GCTTGATGTCAACCAGGACTTGATTTGTGTGGTGCCAAATGACATCCCTAGCTTGATGGT TATCAACAAACCAGTATATGTATGGCAGCAACAAATTTGTGGTACTTGGAACTAGAATAC AATCTTGGGTGCCTCATCCAACAAGCAACGAGAGACCCTTTTTTTGTGGTTATGCAATGA CATGGCTTGGCTAATAAACAAGATAGTATATACGGGCGACCGAGTGAAAGGAAAAAATGA AAGGCACGGAAGAAATGGGAGATGATTTGAGCATGAATGGTTAGATTCTGTGGCCGTGGA AGGCCATGGAATTGATGGCCAGCAGACGTATCTGCAGCTGCAGCTGCAGCGTTTGGTCTT GACGGTCCAAGTCATCCAACCGGCCGGCCAAGACGCTCAGAACCCAATCTCCAGCGTGTG GCCTCTGGGGGATCGGGAGGCTGATCCACAAGCAGGGGTGTGTGTATGCCGCCTCCTCCT CCAAGCTCCCCACAGCAGAGCAGCAATATGCCAATCCACGTGTATTTAAGGCGTCACATA GCTCGGCCTCTATACTTTGAGCAGCAGCAGTCATTCATCACTGATCACCAGCACAGCCGC GCGCATCCACCGTTGCTAGCAAGGTCGACCAAGCAGCACAGAGATGGCTGCTGCCTTCTC CTCCACCGTCGGGGCTCCGGCTTCTACGCCGACCAACTTCCTCGGGAAGAAGCTCAAGAA GCAGGTGACCTCGGCCGTGAACTACCATGGCAAGAGCTCCAAGGCCAACAGGTTCACAGT CATGGCAGCGGAGAACATCGACGAGAAGAGGAACACCGACAAGTGGAAGGGTCTTGCGTA CGATATCTCCGACGACCAGCAGGACATCACCAGAGGGAAGGGCATCGTGGACTCGCTCTT CCAGGCGCCCACGGGCGACGGCACCCACGAGGCCGTCCTCAGCTCCTACGAGTACGTCAG CCAGGGCCTGCGGAAGTACGACTTCGACAACACCATGGGAGGCTTCTACATCGCTCCTGC TTTCATGGACAAGCTTGTTGTCCATCTCTCCAAAAACTTCATGACCCTGCCCAACATCAA GCAGAAGCAGCAATAAAATGAATCATTCTGATTCTGAAACTGACCTTGAATCGAAATTCA GATCCCACTCATCTTGGGTATCTGGGGAGGCAAGGGTCAAGGAAAATCATTCCAGTGTGA GCTTGTGTTCGCCAAGATGGGCATCAACCCCATCATGATGAGTGCCGGAGAGCTGGAGAG TGGGAACGCTGGAGAGCCAGCCAAGCTCATCAGGCAGCGGTACCGTGAGGCTGCAGACAT GATCAAGAAGGGTAAGATGTGCTGCCTCTTCATCAACGATCTTGACGCTGGTGCGGGTAG GATGGGCGGAACCACGCAGTACACCGTCAACAACCAGATGGTGAACGCCACCCTGATGAA CATCGCCGATGCCCCCACCAACGTGCAGCTCCCTGGCATGTACAACAAGGAGGAGAACCC CCGTGTGCCCATCGTCGTCACCGGTAACGATTTCTCGACGCTCTACGCTCCTCTGATCCG TGATGGTCGTATGGAGAAGTTCTACTGGGCTCCCACCCGTGACGACCGTATCGGTGTCTG CAAGGGTATCTTCCAGACCGACAATGTCAGTGACGAGTCTGTCGTCAAGATCGTCGACAC CTTCCCAGGACAATCCATTGACTTTTTCGGTGCTCTGCGTGCTCGGGTGTACGACGATGA GGTGCGCAAGTGGGTCGGCTCTACCGGAATCGAGAACATTGGCAAGAGGCTGGTGAACTC GCGGGACGGGCCCGTGACCTTCGAGCAGCCAAAGATGACAGTCGAGAAGCTGCTAGAGTA CGGGCACATGCTCGTCCAGGAGCAGGACAATGTCAAGCGTGTGCAGCTTGCTGACACCTA CATGAGCCAGGCAGCTCTGGGTGATGCTAACCAGGATGCGATGAAGACTGGTTCCTTCTA CGGTAAAGGAGCACAGCAAGGTACTTTGCCCGTGCCGGAAGGTTGCACCGACCAAAATGC CAAGAACTACGACCCAACGGCAAGGAGCGACGACGGCAGCTGCCTTTACACCTTTTAAGC ATGCCACTTTTAATATCTGATGTTTTACCTACCTAAGTCCGCATCGCATCCAAGCGATTG CTGGGCATGTTTTGTTAATATATCTCTAAATATATTGAGTATACCCATTTGGCAAAGACC AATACACCTACTTATCATTTGTCACTCTCAGTATTCATTCCTTCAGTGGAGACTCCTTCT GCTTTGTTGCAAACAGAACAAGAAAGTATTAATTTGAGCTTCAGCTTATTAATTATTATT GCACAAACGCATGGAAACTGAGAGTCAATTGCGATCATGCGATACATACAGCGTGTAATT TTAGCCCTGATGTTCCAACGTCCAAATTAGATCCCCAAAACTAAACGTCATTTAAGCTTA GAAAGACAAACAGAAAGGAGCAGTTGTTTCAAATGATTGCTGTGGAGAACTACATCCTTA ATAAGCAGCTGCATCATGATGTGGTTCCCTAAGAGCATCTCCAGCCGTTCGATCTTCCGG G
Protein Sequence (427 aa)
>BART1_0-u27957.013 427 150831_barley_pseudomolecules MNVIGADYVILVQASTPTIFLGKKVKNYYHGGNKMKSRVVRVMAAKKELDQGKQTDADRW KGLAYDISDDQQDITRGKGIVDSLFQAPMGDGTHEAILSSYEYISQGLRKYDFDNTMDGL YIAPAFMDKLIVHLAKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSA GELESGNAGEPAKLIRQRYREAADIINKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVN ATLMNIADAPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRED RIGVCKGIFRTDNVPDEAVVRLVDTFPGQSIDFFGALRARVYDDEVRKWVGEIGVENISK RLVNSREGPPTFDQPKMTIEKLMEYGHMLVQEQENVKRVQLADKYLSEAALGQANDDAMK TGAFYGK