- Transcript BART1_0-u27957.006
- Transcript IDBART1_0-u27957.006
- Gene IDBART1_0-u27957
Barley RTD
Exon Structure of BART1_0-u27957.006
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr4H | 1 | 166877994 | 166877118 | - |
| chr4H | 2 | 166878412 | 166878081 | - |
| chr4H | 3 | 166878985 | 166878513 | - |
| chr4H | 4 | 166879322 | 166879237 | - |
| chr4H | 5 | 166880213 | 166879812 | - |
| chr4H | 6 | 166882942 | 166880335 | - |
| chr4H | 7 | 166885269 | 166884994 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 0 | 0 | 0.227995 |
| morex | ETI | 496.946 | 756.394 | 449.55 |
| morex | LEA | 5.04417 | 4.37874 | 0.00861529 |
| morex | EPI | 20.4119 | 15.3806 | 9.82133 |
| morex | ROO | 0 | 0.0107663 | 0 |
| morex | ROO2 | 0 | 0 | 0 |
| morex | NOD | 0 | 0 | 0.393314 |
| morex | RAC | 0.472622 | 0.243097 | 0.172531 |
| morex | INF1 | 0 | 0 | 0 |
| morex | INF2 | 0.103467 | 0 | 0 |
| morex | CAR5 | 4.74523 | 9.08483 | 8.1917 |
| morex | CAR15 | 3.10924 | 3.14761 | 2.67455 |
| morex | LEM | 3.24281 | 1.85543 | 0.50475 |
| morex | LOD | 0 | 0 | 0 |
| morex | PAL | 0 | 0 | 0.146939 |
| morex | SEN | 156.935 | 12.5216 | 17.4038 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os11g47970.1 | +2 | 0.0 | 786 | 375/418 (90%) | protein|AAA-type ATPase family protein, putative, expressed |
| TAIR PP10 | AT2G39730 @ ARAPORT AT2G39730.2 @ TAIR |
+1 | 0.0 | 706 | 341/423 (81%) | Symbols: RCA | rubisco activase | chr2:16571046-16573345 REVERSE LENGTH=446 |
| BRACH PP3 | Bradi4g09125.1.p | +2 | 0.0 | 837 | 398/430 (93%) | pacid=32783475 transcript=Bradi4g09125.1 locus=Bradi4g09125 ID=Bradi4g09125.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (5054 bp)
>BART1_0-u27957.006 5054 150831_barley_pseudomolecules TCGCATCTGTACCTGCTAACCACTGCACCCCTCTCTTTTATCCATATCAGCTCCATCCAT CACTGACGATCGATCTCAGTCCACCTGCATCTGTAGGTGTACTAGTAGTACGCCGGCCTA ATCCAGCTGAGAGCTGATCGAGCTAGCTTGCATATACCACTGCACGTACGCACATCAAAT TAATTAGAAACTACTGTAATTAAGTTATCAGCAGCGAGAAGAGAACGATCGATCAACACC ATGGCTTCTGCTTTCTCGTCCACCGTTGGAGCTCCGGCGTCGACCCCGACCATCTTCCTG GGCAAGAAGGTGAAGAACTACTACCATGGTGGCAACAAGATGAAGAGCAGGGTGGTGAGG GTCATGGCGGCCAAAAAGGAACTTGACCAGGGCAAGCAGACCGATGCGGACCGGTGGAAG GGTCTGGCCTACGACATCTCGGACGACCAGCAGGACATCACTCGGGGGAAAGGCATCGTG GACTCCCTGTTCCAGGCCCCCATGGGCGACGGCACCCACGAGGCCATCCTAAGCTCCTAC GAGTACATCAGCCAGGGCCTGCGGAAGTACGACTTCGACAACACCATGGACGGGCTGTAC ATCGCGCCGGCATTCATGGACAAGCTCATCGTCCACCTCGCCAAGAACTTCATGACACTC CCCAACATCAAGGTTCCTCTCATCCTGGGTATCTGGGGAGGCAAGGGACAGGGCAAGTCG TTCCAGTGTGAGCTGGTGTTCGCCAAGATGGGCATCAACCCCATCATGATGAGCGCCGGT GAGCTGGAGAGCGGCAACGCCGGCGAGCCGGCCAAGCTGATCCGGCAGAGGTACCGCGAG GCGGCCGACATTATCAACAAGGGCAAGATGTGCTGCCTCTTCATCAACGACCTGGACGCC GGCGCGGGCCGGATGGGCGGGACGACGCAGTACACGGTGAACAACCAGATGGTGAACGCC ACCCTGATGAACATCGCGGACGCGCCCACCAACGTGCAGCTCCCGGGGATGTACAACAAG GAGGAGAACCCCCGCGTGCCCATCATCGTCACCGGCAACGACTTCTCGACGCTGTACGCT CCCCTGATCCGTGACGGGCGCATGGAGAAGTTCTACTGGGCGCCCACCCGCGAGGACCGC ATCGGCGTGTGCAAGGGCATCTTCCGCACCGACAACGTCCCGGACGAGGCCGTGGTGAGG CTGGTGGACACCTTCCCGGGGCAGTCCATCGACTTCTTCGGCGCGCTGCGGGCACGGGTG TACGACGACGAGGTGCGCAAGTGGGTCGGCGAGATCGGCGTGGAGAACATCTCCAAGCGC CTCGTCAACTCCAGGGAGGGGCCGCCCACGTTCGACCAGCCCAAGATGACCATAGAGAAG CTCATGGAGTACGGCCACATGCTGGTCCAGGAGCAGGAGAACGTCAAGCGTGTGCAGCTC GCCGACAAGTACCTCAGCGAGGCGGCGCTCGGCCAAGCCAACGACGACGCCATGAAGACC GGTGCCTTCTACGGCAAGTAGAAGGTCCTACTCTACTTAAGATGCATGCATGCACTATAT ATATGTTGGACTATTTTGGACCCGAAATCCACTCAAACTTTTTGATTCATCGCCGCACAG GTAACCCAATTGTAAGTCTCTTCTTGAAAGAGAAAGGAATTGTATATGTTCTTAAATCGT CATTTTCCGCTTAATCATTTCTCCAATGGATGCAAGCTAGGGTCCCAAGTCCCAACAACC TATATATCTCTTGATATTAGCACTTGTCGGAAGATTAGCACATATGTGGAAATCATCTGA AGCTTGTTGATTAGGTACGAGTACTGTGGATGTGGGGGGTCATGACTCATCACATACATA CATATTTTCCCTTTGACGGATTACGGAAACCCCAATTTGCACCACAAAGTTGATTAACAA GGACAACATCACTAGAAGGTGTATTGGACAAAGATTGTGCGAGCCAAACGGCTCGCATTC ATCGTAATGATCAATTAATGGTCTGTACTAGACCCAAACAATGAGAATACCAGCAGGGAA CTTGAGCTAGGCAACACGAATTACATTTACATGAAAACATTAGACACGTTCTATAATCTT TTCATCAAAGCAAAACTGCATGGCTACCTTTTCTCTTAATACGCTTCATTTTTTTTTACC GAAGTGGCAATATTTATTGGAGTAGACAAAAGTACAAACCCATGTGCTTGATGTCAACCA GGACTTGATTTGTGTGGTGCCAAATGACATCCCTAGCTTGATGGTTATCAACAAACCAGT ATATGTATGGCAGCAACAAATTTGTGGTACTTGGAACTAGAATACAATCTTGGGTGCCTC ATCCAACAAGCAACGAGAGACCCTTTTTTTGTGGTTATGCAATGACATGGCTTGGCTAAT AAACAAGATAGTATATACGGGCGACCGAGTGAAAGGAAAAAATGAAAGGCACGGAAGAAA TGGGAGATGATTTGAGCATGAATGGTTAGATTCTGTGGCCGTGGAAGGCCATGGAATTGA TGGCCAGCAGACGTATCTGCAGCTGCAGCTGCAGCGTTTGGTCTTGACGGTCCAAGTCAT CCAACCGGCCGGCCAAGACGCTCAGAACCCAATCTCCAGCGTGTGGCCTCTGGGGGATCG GGAGGCTGATCCACAAGCAGGGGTGTGTGTATGCCGCCTCCTCCTCCAAGCTCCCCACAG CAGAGCAGCAATATGCCAATCCACGTGTATTTAAGGCGTCACATAGCTCGGCCTCTATAC TTTGAGCAGCAGCAGTCATTCATCACTGATCACCAGCACAGCCGCGCGCATCCACCGTTG CTAGCAAGGTCGACCAAGCAGCACAGAGATGGCTGCTGCCTTCTCCTCCACCGTCGGGGC TCCGGCTTCTACGCCGACCAACTTCCTCGGGAAGAAGCTCAAGAAGCAGGTGACCTCGGC CGTGAACTACCATGGCAAGAGCTCCAAGGCCAACAGGTTCACAGTCATGGCAGCGGAGAA CATCGACGAGAAGAGGAACACCGACAAGTGGAAGGGTCTTGCGTACGATATCTCCGACGA CCAGCAGGACATCACCAGAGGGAAGGGCATCGTGGACTCGCTCTTCCAGGCGCCCACGGG CGACGGCACCCACGAGGCCGTCCTCAGCTCCTACGAGTACGTCAGCCAGGGCCTGCGGAA GTACGACTTCGACAACACCATGGGAGGCTTCTACATCGCTCCTGCTTTCATGGACAAGCT TGTTGTCCATCTCTCCAAAAACTTCATGACCCTGCCCAACATCAAGATCCCACTCATCTT GGGTATCTGGGGAGGCAAGGGTCAAGGAAAATCATTCCAGTGTGAGCTTGTGTTCGCCAA GATGGGCATCAACCCCATCATGATGAGTGCCGGAGAGCTGGAGAGTGGGAACGCTGGAGA GCCAGCCAAGCTCATCAGGCAGCGGTACCGTGAGGCTGCAGACATGATCAAGAAGGGTAA GATGTGCTGCCTCTTCATCAACGATCTTGACGCTGGTGCGGGTAGGATGGGCGGAACCAC GCAGTACACCGTCAACAACCAGATGGTGAACGCCACCCTGATGAACATCGCCGATGCCCC CACCAACGTGCAGCTCCCTGGCATGTACAACAAGGAGGAGAACCCCCGTGTGCCCATCGT CGTCACCGGTAACGATTTCTCGACGCTCTACGCTCCTCTGATCCGTGATGGTCGTATGGA GAAGTTCTACTGGGCTCCCACCCGTGACGACCGTATCGGTGTCTGCAAGGGTATCTTCCA GACCGACAATGTCAGTGACGAGTCTGTCGTCAAGATCGTCGACACCTTCCCAGGACAATC CATTGACTTTTTCGGTGCTCTGCGTGCTCGGGTGTACGACGATGAGGTGCGCAAGTGGGT CGGCTCTACCGGAATCGAGAACATTGGCAAGAGGCTGGTGAACTCGCGGGACGGGCCCGT GACCTTCGAGCAGCCAAAGATGACAGTCGAGAAGCTGCTAGAGTACGGGCACATGCTCGT CCAGGAGCAGGACAATGTCAAGCGTGTGCAGCTTGCTGACACCTACATGAGCCAGGCAGC TCTGGGTGATGCTAACCAGGATGCGATGAAGACTGGTTCCTTCTACGGTTAGAAAATTCT CCATACACACCCACCATCTCTTGCTGCATAGGAGGAGGGAGTGGAGGCCTGTTTTTCTTA CCTGCTCTTCCGCCGGCATATCAAGCTCATCTTCTCATCACGTCGTCCAAAACAATTAAA TTGCAGGTAAAGGAGCACAGCAAGGTACTTTGCCCGTGCCGGAAGGTTGCACCGACCAAA ATGCCAAGAACTACGACCCAACGGCAAGGAGCGACGACGGCAGCTGCCTTTACACCTTTT AAGCATGCCACTTTTAATATCTGATGTTTTACCTACCTAAGTCCGCATCGCATCCAAGCG ATTGCTGGGCATGTTTTGTTAATATATCTCTAAATATATTGAGTATACCCATTTGGCAAA GACCAATACACCTACTTATCATTTGTCACTCTCAGTATTCATTCCTTCAGTGGAGACTCC TTCTGCTTTGTTGCAAACAGAACAAGAAAGTATTAATTTGAGCTTCAGCTTATTAATTAT TATTGCACAAACGCATGGAAACTGAGAGTCAATTGCGATCATGCGATACATACAGCGTGT AATTTTAGCCCTGATGTTCCAACGTCCAAATTAGATCCCCAAAACTAAACGTCATTTAAG CTTAGAAAGACAAACAGAAAGGAGCAGTTGTTTCAAATGATTGCTGTGGAGAACTACATC CTTAATAAGCAGCTGCATCATGATGTGGTTCCCTAAGAGCATCTCCAGCCGTTCGATCTT CCGGGGCGTAAAATAGCGCCTCCTGGAGGCGCGTCGGCGGAAAAATCGACGTGGGAGGCT CGGGTTCCCAGCCGTCCCCCAAGGTCGCCCCCACCCGCTGATTTCTGCACATTTTCGGTG CTAATTGGCCCACTTTCAGCGCAAATTGGTTCACTTTCGACGCAAAATGAGACCAATTTT GATCCATATTCAGC
Protein Sequence (427 aa)
>BART1_0-u27957.006 427 150831_barley_pseudomolecules MAAAFSSTVGAPASTPTNFLGKKLKKQVTSAVNYHGKSSKANRFTVMAAENIDEKRNTDK WKGLAYDISDDQQDITRGKGIVDSLFQAPTGDGTHEAVLSSYEYVSQGLRKYDFDNTMGG FYIAPAFMDKLVVHLSKNFMTLPNIKIPLILGIWGGKGQGKSFQCELVFAKMGINPIMMS AGELESGNAGEPAKLIRQRYREAADMIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMV NATLMNIADAPTNVQLPGMYNKEENPRVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRD DRIGVCKGIFQTDNVSDESVVKIVDTFPGQSIDFFGALRARVYDDEVRKWVGSTGIENIG KRLVNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAM KTGSFYG