- Transcript BART1_0-u27957.004
- Transcript IDBART1_0-u27957.004
- Gene IDBART1_0-u27957
Barley RTD
Exon Structure of BART1_0-u27957.004
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr4H | 1 | 166877905 | 166876660 | - |
| chr4H | 2 | 166878412 | 166878131 | - |
| chr4H | 3 | 166878985 | 166878513 | - |
| chr4H | 4 | 166879322 | 166879237 | - |
| chr4H | 5 | 166880213 | 166879812 | - |
| chr4H | 6 | 166882942 | 166880335 | - |
| chr4H | 7 | 166885518 | 166884994 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 0 | 0 | 0 |
| morex | ETI | 0 | 0 | 0 |
| morex | LEA | 0.17697 | 0.0671433 | 1.9028 |
| morex | EPI | 0 | 0 | 0 |
| morex | ROO | 0 | 0 | 0 |
| morex | ROO2 | 0 | 0 | 0 |
| morex | NOD | 0 | 0 | 0 |
| morex | RAC | 0 | 0.000000000101056 | 0.00106223 |
| morex | INF1 | 0 | 0 | 0 |
| morex | INF2 | 0 | 0 | 0.106258 |
| morex | CAR5 | 0 | 0 | 0 |
| morex | CAR15 | 0 | 0 | 0 |
| morex | LEM | 0 | 0.17164 | 0.40229 |
| morex | LOD | 0 | 0 | 0 |
| morex | PAL | 0 | 0.167563 | 0.0555724 |
| morex | SEN | 0 | 0.579166 | 1.09458 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os11g47970.1 | +2 | 0.0 | 785 | 374/417 (90%) | protein|AAA-type ATPase family protein, putative, expressed |
| TAIR PP10 | AT2G39730 @ ARAPORT AT2G39730.1 @ TAIR |
+2 | 0.0 | 755 | 362/460 (79%) | Symbols: RCA | rubisco activase | chr2:16570951-16573345 REVERSE LENGTH=474 |
| BRACH PP3 | Bradi4g09125.2.p | +2 | 0.0 | 910 | 432/467 (93%) | pacid=32783473 transcript=Bradi4g09125.2 locus=Bradi4g09125 ID=Bradi4g09125.2.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (5622 bp)
>BART1_0-u27957.004 5622 150831_barley_pseudomolecules TGGGAGATGCCCAACCCTATCCACACAATTAACATCTCATCATCCACTCCACTTGGCTCG CCTCACTAGCTACTTATCGCAGCCGGCCTGATAATCACAGCTTATGTGGCTTGACTGCGT GATTACGCAGGGACGCTCTAGAATAGTCTCTCACGCTCTAGGTCACTCCAGTCGTGTTGG ACGCTTGCTCCATGGCCATCTGTCCATGCACCTATATAAGACGCCATGGCCAAGCTCCAT CGATCGGCATCGCATCTGTACCTGCTAACCACTGCACCCCTCTCTTTTATCCATATCAGC TCCATCCATCACTGACGATCGATCTCAGTCCACCTGCATCTGTAGGTGTACTAGTAGTAC GCCGGCCTAATCCAGCTGAGAGCTGATCGAGCTAGCTTGCATATACCACTGCACGTACGC ACATCAAATTAATTAGAAACTACTGTAATTAAGTTATCAGCAGCGAGAAGAGAACGATCG ATCAACACCATGGCTTCTGCTTTCTCGTCCACCGTTGGAGCTCCGGCGTCGACCCCGACC ATCTTCCTGGGCAAGAAGGTGAAGAACTACTACCATGGTGGCAACAAGATGAAGAGCAGG GTGGTGAGGGTCATGGCGGCCAAAAAGGAACTTGACCAGGGCAAGCAGACCGATGCGGAC CGGTGGAAGGGTCTGGCCTACGACATCTCGGACGACCAGCAGGACATCACTCGGGGGAAA GGCATCGTGGACTCCCTGTTCCAGGCCCCCATGGGCGACGGCACCCACGAGGCCATCCTA AGCTCCTACGAGTACATCAGCCAGGGCCTGCGGAAGTACGACTTCGACAACACCATGGAC GGGCTGTACATCGCGCCGGCATTCATGGACAAGCTCATCGTCCACCTCGCCAAGAACTTC ATGACACTCCCCAACATCAAGGTTCCTCTCATCCTGGGTATCTGGGGAGGCAAGGGACAG GGCAAGTCGTTCCAGTGTGAGCTGGTGTTCGCCAAGATGGGCATCAACCCCATCATGATG AGCGCCGGTGAGCTGGAGAGCGGCAACGCCGGCGAGCCGGCCAAGCTGATCCGGCAGAGG TACCGCGAGGCGGCCGACATTATCAACAAGGGCAAGATGTGCTGCCTCTTCATCAACGAC CTGGACGCCGGCGCGGGCCGGATGGGCGGGACGACGCAGTACACGGTGAACAACCAGATG GTGAACGCCACCCTGATGAACATCGCGGACGCGCCCACCAACGTGCAGCTCCCGGGGATG TACAACAAGGAGGAGAACCCCCGCGTGCCCATCATCGTCACCGGCAACGACTTCTCGACG CTGTACGCTCCCCTGATCCGTGACGGGCGCATGGAGAAGTTCTACTGGGCGCCCACCCGC GAGGACCGCATCGGCGTGTGCAAGGGCATCTTCCGCACCGACAACGTCCCGGACGAGGCC GTGGTGAGGCTGGTGGACACCTTCCCGGGGCAGTCCATCGACTTCTTCGGCGCGCTGCGG GCACGGGTGTACGACGACGAGGTGCGCAAGTGGGTCGGCGAGATCGGCGTGGAGAACATC TCCAAGCGCCTCGTCAACTCCAGGGAGGGGCCGCCCACGTTCGACCAGCCCAAGATGACC ATAGAGAAGCTCATGGAGTACGGCCACATGCTGGTCCAGGAGCAGGAGAACGTCAAGCGT GTGCAGCTCGCCGACAAGTACCTCAGCGAGGCGGCGCTCGGCCAAGCCAACGACGACGCC ATGAAGACCGGTGCCTTCTACGGCAAGTAGAAGGTCCTACTCTACTTAAGATGCATGCAT GCACTATATATATGTTGGACTATTTTGGACCCGAAATCCACTCAAACTTTTTGATTCATC GCCGCACAGGTAACCCAATTGTAAGTCTCTTCTTGAAAGAGAAAGGAATTGTATATGTTC TTAAATCGTCATTTTCCGCTTAATCATTTCTCCAATGGATGCAAGCTAGGGTCCCAAGTC CCAACAACCTATATATCTCTTGATATTAGCACTTGTCGGAAGATTAGCACATATGTGGAA ATCATCTGAAGCTTGTTGATTAGGTACGAGTACTGTGGATGTGGGGGGTCATGACTCATC ACATACATACATATTTTCCCTTTGACGGATTACGGAAACCCCAATTTGCACCACAAAGTT GATTAACAAGGACAACATCACTAGAAGGTGTATTGGACAAAGATTGTGCGAGCCAAACGG CTCGCATTCATCGTAATGATCAATTAATGGTCTGTACTAGACCCAAACAATGAGAATACC AGCAGGGAACTTGAGCTAGGCAACACGAATTACATTTACATGAAAACATTAGACACGTTC TATAATCTTTTCATCAAAGCAAAACTGCATGGCTACCTTTTCTCTTAATACGCTTCATTT TTTTTTACCGAAGTGGCAATATTTATTGGAGTAGACAAAAGTACAAACCCATGTGCTTGA TGTCAACCAGGACTTGATTTGTGTGGTGCCAAATGACATCCCTAGCTTGATGGTTATCAA CAAACCAGTATATGTATGGCAGCAACAAATTTGTGGTACTTGGAACTAGAATACAATCTT GGGTGCCTCATCCAACAAGCAACGAGAGACCCTTTTTTTGTGGTTATGCAATGACATGGC TTGGCTAATAAACAAGATAGTATATACGGGCGACCGAGTGAAAGGAAAAAATGAAAGGCA CGGAAGAAATGGGAGATGATTTGAGCATGAATGGTTAGATTCTGTGGCCGTGGAAGGCCA TGGAATTGATGGCCAGCAGACGTATCTGCAGCTGCAGCTGCAGCGTTTGGTCTTGACGGT CCAAGTCATCCAACCGGCCGGCCAAGACGCTCAGAACCCAATCTCCAGCGTGTGGCCTCT GGGGGATCGGGAGGCTGATCCACAAGCAGGGGTGTGTGTATGCCGCCTCCTCCTCCAAGC TCCCCACAGCAGAGCAGCAATATGCCAATCCACGTGTATTTAAGGCGTCACATAGCTCGG CCTCTATACTTTGAGCAGCAGCAGTCATTCATCACTGATCACCAGCACAGCCGCGCGCAT CCACCGTTGCTAGCAAGGTCGACCAAGCAGCACAGAGATGGCTGCTGCCTTCTCCTCCAC CGTCGGGGCTCCGGCTTCTACGCCGACCAACTTCCTCGGGAAGAAGCTCAAGAAGCAGGT GACCTCGGCCGTGAACTACCATGGCAAGAGCTCCAAGGCCAACAGGTTCACAGTCATGGC AGCGGAGAACATCGACGAGAAGAGGAACACCGACAAGTGGAAGGGTCTTGCGTACGATAT CTCCGACGACCAGCAGGACATCACCAGAGGGAAGGGCATCGTGGACTCGCTCTTCCAGGC GCCCACGGGCGACGGCACCCACGAGGCCGTCCTCAGCTCCTACGAGTACGTCAGCCAGGG CCTGCGGAAGTACGACTTCGACAACACCATGGGAGGCTTCTACATCGCTCCTGCTTTCAT GGACAAGCTTGTTGTCCATCTCTCCAAAAACTTCATGACCCTGCCCAACATCAAGATCCC ACTCATCTTGGGTATCTGGGGAGGCAAGGGTCAAGGAAAATCATTCCAGTGTGAGCTTGT GTTCGCCAAGATGGGCATCAACCCCATCATGATGAGTGCCGGAGAGCTGGAGAGTGGGAA CGCTGGAGAGCCAGCCAAGCTCATCAGGCAGCGGTACCGTGAGGCTGCAGACATGATCAA GAAGGGTAAGATGTGCTGCCTCTTCATCAACGATCTTGACGCTGGTGCGGGTAGGATGGG CGGAACCACGCAGTACACCGTCAACAACCAGATGGTGAACGCCACCCTGATGAACATCGC CGATGCCCCCACCAACGTGCAGCTCCCTGGCATGTACAACAAGGAGGAGAACCCCCGTGT GCCCATCGTCGTCACCGGTAACGATTTCTCGACGCTCTACGCTCCTCTGATCCGTGATGG TCGTATGGAGAAGTTCTACTGGGCTCCCACCCGTGACGACCGTATCGGTGTCTGCAAGGG TATCTTCCAGACCGACAATGTCAGTGACGAGTCTGTCGTCAAGATCGTCGACACCTTCCC AGGACAATCCATTGACTTTTTCGGTGCTCTGCGTGCTCGGGTGTACGACGATGAGGTGCG CAAGTGGGTCGGCTCTACCGGAATCGAGAACATTGGCAAGAGGCTGGTGAACTCGCGGGA CGGGCCCGTGACCTTCGAGCAGCCAAAGATGACAGTCGAGAAGCTGCTAGAGTACGGGCA CATGCTCGTCCAGGAGCAGGACAATGTCAAGCGTGTGCAGCTTGCTGACACCTACATGAG CCAGGCAGCTCTGGGTGATGCTAACCAGGATGCGATGAAGACTGGTTCCTTCTACGGTAA AGGAGCACAGCAAGGTACTTTGCCCGTGCCGGAAGGTTGCACCGACCAAAATGCCAAGAA CTACGACCCAACGGCAAGGAGCGACGACGGCAGCTGCCTTTACACCTTTTAAGCATGCCA CTTTTAATATCTGATGTTTTACCTACCTAAGTCCGCATCGCATCCAAGCGATTGCTGGGC ATGTTTTGTTAATATATCTCTAAATATATTGAGTATACCCATTTGGCAAAGACCAATACA CCTACTTATCATTTGTCACTCTCAGTATTCATTCCTTCAGTGGAGACTCCTTCTGCTTTG TTGCAAACAGAACAAGAAAGTATTAATTTGAGCTTCAGCTTATTAATTATTATTGCACAA ACGCATGGAAACTGAGAGTCAATTGCGATCATGCGATACATACAGCGTGTAATTTTAGCC CTGATGTTCCAACGTCCAAATTAGATCCCCAAAACTAAACGTCATTTAAGCTTAGAAAGA CAAACAGAAAGGAGCAGTTGTTTCAAATGATTGCTGTGGAGAACTACATCCTTAATAAGC AGCTGCATCATGATGTGGTTCCCTAAGAGCATCTCCAGCCGTTCGATCTTCCGGGGCGTA AAATAGCGCCTCCTGGAGGCGCGTCGGCGGAAAAATCGACGTGGGAGGCTCGGGTTCCCA GCCGTCCCCCAAGGTCGCCCCCACCCGCTGATTTCTGCACATTTTCGGTGCTAATTGGCC CACTTTCAGCGCAAATTGGTTCACTTTCGACGCAAAATGAGACCAATTTTGATCCATATT CAGCATGCTTTAACACAAATTAAACAAATCATTTATTTTTCTATCACATAGTTCATCACA GAAATCAATACAAATCAAAAATAGTTTAACAAATCAAAATAGTTCAACAAATAAAAACTC ATAATTCATCACACATCGAGCTAGGCGTTGCCCTTAAGCCTCCATAGGTACTCCACCAAA TCGGTTTATAGTTGTTGATGCACCTGTGGGTCTCGAATCTCCTGACACATGTTGATGAAG GCACTCGAAGTTGCCGGTAGCTGGTGATCAACTTGGGCAAGGGGACCCTGCCTGTAATAT GGTTCAATGTCAAAGACGGGCTCTTCCCGCTCGCTCTCAATGTTCATGTTGTGCAAGATG ACACACCAAGTCATGTCTTCTCACATTTGATCTTTCGACCACGTCTGAGCGGAGTATCGA ACAATAGAAAAACGAGATTGGAGCACACCAAATGCTCGCTCG
Protein Sequence (464 aa)
>BART1_0-u27957.004 464 150831_barley_pseudomolecules MAAAFSSTVGAPASTPTNFLGKKLKKQVTSAVNYHGKSSKANRFTVMAAENIDEKRNTDK WKGLAYDISDDQQDITRGKGIVDSLFQAPTGDGTHEAVLSSYEYVSQGLRKYDFDNTMGG FYIAPAFMDKLVVHLSKNFMTLPNIKIPLILGIWGGKGQGKSFQCELVFAKMGINPIMMS AGELESGNAGEPAKLIRQRYREAADMIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMV NATLMNIADAPTNVQLPGMYNKEENPRVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRD DRIGVCKGIFQTDNVSDESVVKIVDTFPGQSIDFFGALRARVYDDEVRKWVGSTGIENIG KRLVNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAM KTGSFYGKGAQQGTLPVPEGCTDQNAKNYDPTARSDDGSCLYTF