- Transcript BART1_0-u27304.002
- Transcript IDBART1_0-u27304.002
- Gene IDBART1_0-u27304
Barley RTD
Exon Structure of BART1_0-u27304.002
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr4H | 1 | 75934518 | 75930735 | - |
| chr4H | 2 | 75934913 | 75934770 | - |
| chr4H | 3 | 75936433 | 75936189 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 0 | 5.24061 | 1.61314 |
| morex | ETI | 2.77038 | 4.14126 | 1.88378 |
| morex | LEA | 3.11491 | 2.16474 | 2.19523 |
| morex | EPI | 0.370892 | 1.56688 | 1.26998 |
| morex | ROO | 3.03714 | 2.65896 | 0.796671 |
| morex | ROO2 | 1.09287 | 1.08734 | 0.726411 |
| morex | NOD | 2.20004 | 1.90293 | 1.37419 |
| morex | RAC | 3.67877 | 4.13338 | 3.58474 |
| morex | INF1 | 8.11163 | 5.15991 | 8.87809 |
| morex | INF2 | 5.87979 | 7.63393 | 4.16282 |
| morex | CAR5 | 11.745 | 9.90719 | 8.73739 |
| morex | CAR15 | 0.98422 | 2.46379 | 1.83679 |
| morex | LEM | 2.35688 | 1.44457 | 1.98402 |
| morex | LOD | 6.76693 | 3.66226 | 5.45453 |
| morex | PAL | 3.99787 | 4.43012 | 4.72509 |
| morex | SEN | 1.55635 | 0.508332 | 1.62157 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os11g08090.1 | +1 | 0.0 | 1526 | 848/1019 (83%) | protein|expressed protein |
| TAIR PP10 | AT1G77460 @ ARAPORT AT1G77460.2 @ TAIR |
+1 | 0.0 | 950 | 563/1010 (56%) | Symbols: | Armadillo/beta-catenin-like repeat ; C2 calcium/lipid-binding domain (CaLB) protein | chr1:29104378-29111580 FORWARD LENGTH=2136 |
| BRACH PP3 | Bradi4g23680.2.p | +1 | 0.0 | 1580 | 917/1046 (88%) | pacid=32790009 transcript=Bradi4g23680.2 locus=Bradi4g23680 ID=Bradi4g23680.2.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (4173 bp)
>BART1_0-u27304.002 4173 150831_barley_pseudomolecules CGTCCGTCCATGTCCGCTGCCGTAATAACGCGACAATGACGGGAGTGATCCGCAAAAGAC CCACCCCTCTCTCTCCCTCCCTCCCCACTTCCCCTGTTCCAAAAAGCTTTCGCATCTCTC TCTCTCTCTCTTCACAGTTCACACCCACACTGCGCGGCACAGTGGGCGAGTGGGCGCGAG ACCAAGCGTCGCCTCCTCCTCTCCTCCGCCTCGGTCTCGCCGCCGGACGTCTTCGCCTGC CGCCGTTTGTCTTGCAGGAGGACATATAAAACAATTAAGATTGTAAACGTTGGTAACTGT TCAATCATGCCGATATCCAACTCAACGGAACCTCGAGATTCTCGAGACCCTACTTCACCT GCGCCATCCACGTCATCTTCTAGATCAAGGGAAGCATGCAATCTTGCAGAAGTTGATGAC CCTGAAAGTGCAATGTCCACTGTTGCTCGATTGCTGGAGCAGCTACATGGTAGCTTGACA TCACTGCCAGAGAAGGAAGTGGCAATCAAAAGATTACTTGAACTTGCCAAGGCGAAGAAG GATGCAAGGATTTTGATAGGTAGCCATTCTCAGGCCATGCCATTATTTATATCTATCCTT AGAAGCGGGGCATCTTCAGCCAAAGTAAATGCTGCGGCCCTGCTTAGTGCACTCTGCAAG GAAGAGGATCTGCGTGTCAAGGTTCTCTTAGGAGGTTGCATACCACCCTTGCTCTCTCTC TTGAAGTCTGAATCTGCTGAAGCAAAGAAGGCTGCCGCTGAGGCTATTTTTGAAGTGTCT TCAGGGGGTCTTTCGGATGATCACATCGGCATGAAAATATTTGTGACAGAAGGCGTTGTG CCGACTCTTTGGGATTTGCTCAATCCTAAGTCACGCCAAGATAGAATAGTTGAGGGCTTT GTGACTGGGGCTTTAAGAAATCTCTGTGGAGATAAAGATGGTTATTGGAAGGCCACACTT GAAGCGGGTGGAGTAGAAATTATTACCGGTCTTCTTTCATCCAAAAATACTGCTTCGCAG TCAAATGCTGCCTCCCTCTTGGCACGGTTGATTTCTGCTTTCAGTGATAGCATTCCCAAA ATCATAGCTGCTGGGGCTGTTAAGGCCCTTCTTCAGCTTCTGAATCGAGATGATGACATT GCTGTTCGTGAAAGTGCAGCTGATGCTTTGGAGGCCTTATCTTCCAAGTCTACCATTGCA AAGAAAGCTGTGGTCGATGCAGGCGGCCTCCCTGTTTTGATTGGAGCTGTTGTAGCGCCC TCAAAAGAGTGCATGCGAGGGGTTACCTGCCATTCTCTACAAAGCCATGCCGTTTGTGCT TTATCAAATATTTGCGGTGGAGCCACTTCGTTGTTGCTTTACCTGGGAGAGCTTTGCCAA TCACCCCGGTCAGCTGTGTCCCTTGCTGACATTCTTGGAGCACTTGCATATACGCTGATG GTGTATGATGGCACTGATGGTAAATTCTTTGATCCTGTTGAGATAGAAAGCATTTTGGTT GTGCTCCTGAAATCCCATGACAGTAAGCTTTTGCTTGATCGTATTCTTGAAGCTTTAGCA AGTCTATATGCAAATGCATGTTTCTCTGGCAGACTTGATCACTCAAATGCAAAGAAGGTT CTTGTTGGGCTGGTCACTATGGCTACCGACGATGTTCAAGACCATCTTGTTCATGCCTTA ACTAGCTTGTGCTGTGATGGTTTTGGATTGTGGGACGCTCTTGGAAAGAGAGAAGGAGTT CAGTTGCTAATATCATTACTTGGACTTTCCAGTGAGCAGCATCAGGAGTATGCAGTTTCT TTGTTGGCTATCTTGAGTGATGAAGTAGATGACAGTAAGTGGGCAATAACAGCTGCTGGA GGTATCCCTCCACTTGTCCAACTACTTGAAACAGGATCTCAAAGGGCAAAGGAGGATGCA GCTCATATCATATGCAACTTGTGCTGTCACAGTGATGATATCAGGGCATGTGTTGAGAGT GCTGGTGCTGTTCTGGCGCTGCTTTGGCTTCTAAAGAGTGACAGTCCTCGTGGACAAGAG GCGTCAGTCAAAGCACTCAAGGTGCTTATACGGTCTGCTGATTCCGCCACAATCAATCAG CTGTTAGCACTGCTGCTCAGTGACTCAGTGAGCTCAAAGGCACACGCCATTACAGTTCTT GGGCATGTCCTTGTGCTGGCTCCTCAAAGAGACCTAATCCAGAATGGAGCTCCTGCTAAT AAAGGGCTTAGGTCTCTTGTTCTTGTTCTTGACTCGTCAAATGAAGAATCTCAGGAATGT GCTGCAACTGTGTTGGCTGATATTTTCAGTATGCGTCAGGATATTTGCGACATCTTAGCA ACTGATGAAATTGTTCAGCCATTCATGAAGCTTTTGACAAGTGGAAATCAAGTTATGGCA ACACAATCTGCTCGAGCTTTAGGAGCACTCTCGCGCTCGGCTAATACCATGTCGAAGAAC AAGATGTCATGTATAGCTGAAGGTGACGTGCAACCTCTCATAGAGATGGCCAAGACATCA TCCATTGATGCGGCTGAAGCGGCAATTGCTGCATTGGCAAATCTCTTATCAGATTCCCAG ATTGCTAAGGAGGCGCTAGGTGATAATATTGTCCAAGCTTTGACTAGAGTCCTAAAGGAG GGGAGTTTAGATGGCAAAATTAGTGCTTCACGGTCACTTTATCACTTGCTCAACCAATTC CCCCTCTGTGAAGTTTTTCCAGATTACTCACTCTGCTGCTTTATAATTCATGCACTGCTG GTGTGTCTATCCGGTATCAGTTTGGAAAAAGTTACTAGTTTGGATCCCCTGGATGTGCTT GCATTGATGGTGATGACCAAGGAGGGTGCTCATTTTAGCCCCCCTCTGCGGACTGCCTTT CTTGAAGCCCCAGAAGGTTTAGAACCTCTGGTCCGCTGTATCAGTGTTGGGCTCCCCCCT ATTCAAGACAAATCCATTCAAATTCTCGCAAGGCTATGTCAGGACCAATCTTCTCTGCTT AGTGAGCACATAAACAGAAGTGAAGGCTGCATTGATTCTCTTGTCAGTAGAGTTATGGAA TCAACAAACATGGAAATAAGAATCTCCAGTGCAATCACCCTCATATCTGCGTTGAAGGAC AAGAGAGAACATTCAATTGAAGTTCTTGAAGCATCTGGACATCTGAAGAGTCTAATATCT GCACTCATTGATATGTTGAAGCAAGAGTCCACTTCAACATCCCTAGATATTGAAGTCTGG AAACCTTACACAGAGAAGAGTTTGTTCAATTGTGAGCAGGATGTTTTGGATGTGCCTGAA TCAGGGAAGGTTCTGGAAGAAACTGTTGCACGTTTGCTCTCACTAATTTGTTCTTCTCAT CCCAGGAGTAAACTTACTGTTATGGATCTTGGTGGTGTTGAGATTGTTTCTGATAAACTT GCTTCTGCTAGCCGACAGGTGCATGTTTCACTTTTTAATCTCTATTTTCTATTGTGCTGC CATTACATTTTTCTTGTCTCTTCAGCTGCAATCACTTGATAAATTTAAGCTTTTACTTCG CTGAAATGCTATGCTTGTTTGAGTTGAGGGATACATCAAGATAAATGCTATCTTTGTGGG CCAAGCACTTTTTTGGTTCTGCATTGATTACTTTAACATGGCTCCTTTATGAGTTATTCG ACTCTTTTTGGGTCCAAGATTTCTCTATCCATGTTACCTGCTTGATGCCTCAAGCTGTTC TTCAATGTAATAGGAAAACACACAACTTGCAGAATGGTTTAAACTGGTCAATTAACTTAG ATCTATTGTGCAAACTGATCAGAATCTCGTCAGCAGGAACACCAGGGGCCATGGTGTCTT GCTGTTGCTGAAGAGGCTGTTTTTTTTTTTTGCAAAAAATAACCCAGATGCTTTTATATG GTGTTGTATGCCAAAATACATCTTTCATGATAAGCCCTTCCTCTGTCTTGGTTCTGCACT GCACGAGCGGTGTGCTTTGCCGGCTGCAGCCGCCAGCTGCTCCTTGCACCGGAGTGGGTC GATCCATACACCGACCATCGAATGCATCCTCATACCTTGGAACGCGGTGCTTGCACACAG GTGTGGGGACGACCATGGTGAATGCCATGAGCAGCTGGCCGGTGCCCATCTGCTGCATAC CAATGAGTTCAGCGGCACCCTGCTCAAGAGCCT
Protein Sequence (1070 aa)
>BART1_0-u27304.002 1070 150831_barley_pseudomolecules MPISNSTEPRDSRDPTSPAPSTSSSRSREACNLAEVDDPESAMSTVARLLEQLHGSLTSL PEKEVAIKRLLELAKAKKDARILIGSHSQAMPLFISILRSGASSAKVNAAALLSALCKEE DLRVKVLLGGCIPPLLSLLKSESAEAKKAAAEAIFEVSSGGLSDDHIGMKIFVTEGVVPT LWDLLNPKSRQDRIVEGFVTGALRNLCGDKDGYWKATLEAGGVEIITGLLSSKNTASQSN AASLLARLISAFSDSIPKIIAAGAVKALLQLLNRDDDIAVRESAADALEALSSKSTIAKK AVVDAGGLPVLIGAVVAPSKECMRGVTCHSLQSHAVCALSNICGGATSLLLYLGELCQSP RSAVSLADILGALAYTLMVYDGTDGKFFDPVEIESILVVLLKSHDSKLLLDRILEALASL YANACFSGRLDHSNAKKVLVGLVTMATDDVQDHLVHALTSLCCDGFGLWDALGKREGVQL LISLLGLSSEQHQEYAVSLLAILSDEVDDSKWAITAAGGIPPLVQLLETGSQRAKEDAAH IICNLCCHSDDIRACVESAGAVLALLWLLKSDSPRGQEASVKALKVLIRSADSATINQLL ALLLSDSVSSKAHAITVLGHVLVLAPQRDLIQNGAPANKGLRSLVLVLDSSNEESQECAA TVLADIFSMRQDICDILATDEIVQPFMKLLTSGNQVMATQSARALGALSRSANTMSKNKM SCIAEGDVQPLIEMAKTSSIDAAEAAIAALANLLSDSQIAKEALGDNIVQALTRVLKEGS LDGKISASRSLYHLLNQFPLCEVFPDYSLCCFIIHALLVCLSGISLEKVTSLDPLDVLAL MVMTKEGAHFSPPLRTAFLEAPEGLEPLVRCISVGLPPIQDKSIQILARLCQDQSSLLSE HINRSEGCIDSLVSRVMESTNMEIRISSAITLISALKDKREHSIEVLEASGHLKSLISAL IDMLKQESTSTSLDIEVWKPYTEKSLFNCEQDVLDVPESGKVLEETVARLLSLICSSHPR SKLTVMDLGGVEIVSDKLASASRQVHVSLFNLYFLLCCHYIFLVSSAAIT