- Gene BART1_0-u27304
- Gene IDBART1_0-u27304
- Location chr4H: 75930735 - 75936433
Barley RTD
Matching HORVU genes
BarleyRTD transcripts were compared to the location of the IBSC 2017 Predicted Transcripts. Overlapping status is classified as Containing (HORVU is smaller than the BART), Contained (BART is smaller than the HORVU), Partial-Overlap (Overlap exists), and Undefined (the BART transcript has no overlapping HORVU).| HORVU ID | Percentage overlap | BART Gene Direction | HORVU Gene Direction | Overlap Length | Gene Length Difference | Overlapping Status |
|---|---|---|---|---|---|---|
| HORVU4Hr1G017340 | 88.5 | - | - | 5040 | -659 | Containing |
Transcripts from Gene BART1_0-u27304
| Transcript | Length(bp) | Description |
|---|---|---|
| BART1_0-u27304.001 | 4161 | 4161 bp MSTRG.27304.1 MSTRG.27304 |
| BART1_0-u27304.002 | 4173 | 4173 bp MSTRG.27304.2 MSTRG.27304 |
| BART1_0-u27304.003 | 3410 | 3410 bp MSTRG.27304.3 MSTRG.27304 |
Exon Structure of BART1_0-u27304
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os11g08090.1 | +1 | 0.0 | 1526 | 848/1019 (83%) | protein|expressed protein |
| TAIR PP10 | AT1G77460 @ ARAPORT AT1G77460.2 @ TAIR |
+1 | 0.0 | 950 | 563/1010 (56%) | Symbols: | Armadillo/beta-catenin-like repeat ; C2 calcium/lipid-binding domain (CaLB) protein | chr1:29104378-29111580 FORWARD LENGTH=2136 |
| BRACH PP3 | Bradi4g23680.2.p | +1 | 0.0 | 1580 | 917/1046 (88%) | pacid=32790009 transcript=Bradi4g23680.2 locus=Bradi4g23680 ID=Bradi4g23680.2.v3.1 annot-version=v3.1 |
GO Annotation
Generated by PANNZER| GO ID | GO terms |
|---|---|
| GO:0052324 | plant-type cell wall cellulose biosynthetic process |
| GO:0008360 | regulation of cell shape |
| GO:0010330 | cellulose synthase complex |
| GO:0009826 | unidimensional cell growth |
| GO:0005515 | protein binding |
| GO:0007275 | multicellular organism development |
| GO:0012505 | endomembrane system |
| GO:0072699 | protein localization to cortical microtubule cytoskeleton |
| GO:0055028 | cortical microtubule |
| GO:0040008 | regulation of growth |
| GO:0005886 | plasma membrane |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons