- Transcript BART1_0-u27304.001
- Transcript IDBART1_0-u27304.001
- Gene IDBART1_0-u27304
Barley RTD
Exon Structure of BART1_0-u27304.001
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr4H | 1 | 75934518 | 75930735 | - |
| chr4H | 2 | 75934901 | 75934770 | - |
| chr4H | 3 | 75936433 | 75936189 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 0.648996 | 4.82057 | 4.84976 |
| morex | ETI | 1.94164 | 1.67661 | 4.05644 |
| morex | LEA | 9.06624 | 4.10028 | 3.04461 |
| morex | EPI | 1.20991 | 0.899558 | 1.27766 |
| morex | ROO | 0.20355 | 4.96438 | 2.79633 |
| morex | ROO2 | 3.46538 | 2.52141 | 3.46101 |
| morex | NOD | 5.00384 | 5.78955 | 1.46717 |
| morex | RAC | 5.28808 | 5.4703 | 7.83255 |
| morex | INF1 | 12.6927 | 9.43584 | 7.48913 |
| morex | INF2 | 9.5181 | 13.0109 | 13.8703 |
| morex | CAR5 | 7.9731 | 6.44963 | 10.2901 |
| morex | CAR15 | 3.86754 | 3.7804 | 4.71206 |
| morex | LEM | 2.51975 | 3.28826 | 3.6366 |
| morex | LOD | 6.53725 | 2.04872 | 5.425 |
| morex | PAL | 3.00946 | 2.56514 | 4.76909 |
| morex | SEN | 0 | 1.55149 | 0.0381063 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os11g08090.1 | +1 | 0.0 | 1528 | 848/1019 (83%) | protein|expressed protein |
| TAIR PP10 | AT1G77460 @ ARAPORT AT1G77460.2 @ TAIR |
+1 | 0.0 | 949 | 565/1012 (56%) | Symbols: | Armadillo/beta-catenin-like repeat ; C2 calcium/lipid-binding domain (CaLB) protein | chr1:29104378-29111580 FORWARD LENGTH=2136 |
| BRACH PP3 | Bradi4g23680.1.p | +1 | 0.0 | 1580 | 917/1046 (88%) | pacid=32790008 transcript=Bradi4g23680.1 locus=Bradi4g23680 ID=Bradi4g23680.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (4161 bp)
>BART1_0-u27304.001 4161 150831_barley_pseudomolecules CGTCCGTCCATGTCCGCTGCCGTAATAACGCGACAATGACGGGAGTGATCCGCAAAAGAC CCACCCCTCTCTCTCCCTCCCTCCCCACTTCCCCTGTTCCAAAAAGCTTTCGCATCTCTC TCTCTCTCTCTTCACAGTTCACACCCACACTGCGCGGCACAGTGGGCGAGTGGGCGCGAG ACCAAGCGTCGCCTCCTCCTCTCCTCCGCCTCGGTCTCGCCGCCGGACGTCTTCGCCTGC CGCCGGAGGACATATAAAACAATTAAGATTGTAAACGTTGGTAACTGTTCAATCATGCCG ATATCCAACTCAACGGAACCTCGAGATTCTCGAGACCCTACTTCACCTGCGCCATCCACG TCATCTTCTAGATCAAGGGAAGCATGCAATCTTGCAGAAGTTGATGACCCTGAAAGTGCA ATGTCCACTGTTGCTCGATTGCTGGAGCAGCTACATGGTAGCTTGACATCACTGCCAGAG AAGGAAGTGGCAATCAAAAGATTACTTGAACTTGCCAAGGCGAAGAAGGATGCAAGGATT TTGATAGGTAGCCATTCTCAGGCCATGCCATTATTTATATCTATCCTTAGAAGCGGGGCA TCTTCAGCCAAAGTAAATGCTGCGGCCCTGCTTAGTGCACTCTGCAAGGAAGAGGATCTG CGTGTCAAGGTTCTCTTAGGAGGTTGCATACCACCCTTGCTCTCTCTCTTGAAGTCTGAA TCTGCTGAAGCAAAGAAGGCTGCCGCTGAGGCTATTTTTGAAGTGTCTTCAGGGGGTCTT TCGGATGATCACATCGGCATGAAAATATTTGTGACAGAAGGCGTTGTGCCGACTCTTTGG GATTTGCTCAATCCTAAGTCACGCCAAGATAGAATAGTTGAGGGCTTTGTGACTGGGGCT TTAAGAAATCTCTGTGGAGATAAAGATGGTTATTGGAAGGCCACACTTGAAGCGGGTGGA GTAGAAATTATTACCGGTCTTCTTTCATCCAAAAATACTGCTTCGCAGTCAAATGCTGCC TCCCTCTTGGCACGGTTGATTTCTGCTTTCAGTGATAGCATTCCCAAAATCATAGCTGCT GGGGCTGTTAAGGCCCTTCTTCAGCTTCTGAATCGAGATGATGACATTGCTGTTCGTGAA AGTGCAGCTGATGCTTTGGAGGCCTTATCTTCCAAGTCTACCATTGCAAAGAAAGCTGTG GTCGATGCAGGCGGCCTCCCTGTTTTGATTGGAGCTGTTGTAGCGCCCTCAAAAGAGTGC ATGCGAGGGGTTACCTGCCATTCTCTACAAAGCCATGCCGTTTGTGCTTTATCAAATATT TGCGGTGGAGCCACTTCGTTGTTGCTTTACCTGGGAGAGCTTTGCCAATCACCCCGGTCA GCTGTGTCCCTTGCTGACATTCTTGGAGCACTTGCATATACGCTGATGGTGTATGATGGC ACTGATGGTAAATTCTTTGATCCTGTTGAGATAGAAAGCATTTTGGTTGTGCTCCTGAAA TCCCATGACAGTAAGCTTTTGCTTGATCGTATTCTTGAAGCTTTAGCAAGTCTATATGCA AATGCATGTTTCTCTGGCAGACTTGATCACTCAAATGCAAAGAAGGTTCTTGTTGGGCTG GTCACTATGGCTACCGACGATGTTCAAGACCATCTTGTTCATGCCTTAACTAGCTTGTGC TGTGATGGTTTTGGATTGTGGGACGCTCTTGGAAAGAGAGAAGGAGTTCAGTTGCTAATA TCATTACTTGGACTTTCCAGTGAGCAGCATCAGGAGTATGCAGTTTCTTTGTTGGCTATC TTGAGTGATGAAGTAGATGACAGTAAGTGGGCAATAACAGCTGCTGGAGGTATCCCTCCA CTTGTCCAACTACTTGAAACAGGATCTCAAAGGGCAAAGGAGGATGCAGCTCATATCATA TGCAACTTGTGCTGTCACAGTGATGATATCAGGGCATGTGTTGAGAGTGCTGGTGCTGTT CTGGCGCTGCTTTGGCTTCTAAAGAGTGACAGTCCTCGTGGACAAGAGGCGTCAGTCAAA GCACTCAAGGTGCTTATACGGTCTGCTGATTCCGCCACAATCAATCAGCTGTTAGCACTG CTGCTCAGTGACTCAGTGAGCTCAAAGGCACACGCCATTACAGTTCTTGGGCATGTCCTT GTGCTGGCTCCTCAAAGAGACCTAATCCAGAATGGAGCTCCTGCTAATAAAGGGCTTAGG TCTCTTGTTCTTGTTCTTGACTCGTCAAATGAAGAATCTCAGGAATGTGCTGCAACTGTG TTGGCTGATATTTTCAGTATGCGTCAGGATATTTGCGACATCTTAGCAACTGATGAAATT GTTCAGCCATTCATGAAGCTTTTGACAAGTGGAAATCAAGTTATGGCAACACAATCTGCT CGAGCTTTAGGAGCACTCTCGCGCTCGGCTAATACCATGTCGAAGAACAAGATGTCATGT ATAGCTGAAGGTGACGTGCAACCTCTCATAGAGATGGCCAAGACATCATCCATTGATGCG GCTGAAGCGGCAATTGCTGCATTGGCAAATCTCTTATCAGATTCCCAGATTGCTAAGGAG GCGCTAGGTGATAATATTGTCCAAGCTTTGACTAGAGTCCTAAAGGAGGGGAGTTTAGAT GGCAAAATTAGTGCTTCACGGTCACTTTATCACTTGCTCAACCAATTCCCCCTCTGTGAA GTTTTTCCAGATTACTCACTCTGCTGCTTTATAATTCATGCACTGCTGGTGTGTCTATCC GGTATCAGTTTGGAAAAAGTTACTAGTTTGGATCCCCTGGATGTGCTTGCATTGATGGTG ATGACCAAGGAGGGTGCTCATTTTAGCCCCCCTCTGCGGACTGCCTTTCTTGAAGCCCCA GAAGGTTTAGAACCTCTGGTCCGCTGTATCAGTGTTGGGCTCCCCCCTATTCAAGACAAA TCCATTCAAATTCTCGCAAGGCTATGTCAGGACCAATCTTCTCTGCTTAGTGAGCACATA AACAGAAGTGAAGGCTGCATTGATTCTCTTGTCAGTAGAGTTATGGAATCAACAAACATG GAAATAAGAATCTCCAGTGCAATCACCCTCATATCTGCGTTGAAGGACAAGAGAGAACAT TCAATTGAAGTTCTTGAAGCATCTGGACATCTGAAGAGTCTAATATCTGCACTCATTGAT ATGTTGAAGCAAGAGTCCACTTCAACATCCCTAGATATTGAAGTCTGGAAACCTTACACA GAGAAGAGTTTGTTCAATTGTGAGCAGGATGTTTTGGATGTGCCTGAATCAGGGAAGGTT CTGGAAGAAACTGTTGCACGTTTGCTCTCACTAATTTGTTCTTCTCATCCCAGGAGTAAA CTTACTGTTATGGATCTTGGTGGTGTTGAGATTGTTTCTGATAAACTTGCTTCTGCTAGC CGACAGGTGCATGTTTCACTTTTTAATCTCTATTTTCTATTGTGCTGCCATTACATTTTT CTTGTCTCTTCAGCTGCAATCACTTGATAAATTTAAGCTTTTACTTCGCTGAAATGCTAT GCTTGTTTGAGTTGAGGGATACATCAAGATAAATGCTATCTTTGTGGGCCAAGCACTTTT TTGGTTCTGCATTGATTACTTTAACATGGCTCCTTTATGAGTTATTCGACTCTTTTTGGG TCCAAGATTTCTCTATCCATGTTACCTGCTTGATGCCTCAAGCTGTTCTTCAATGTAATA GGAAAACACACAACTTGCAGAATGGTTTAAACTGGTCAATTAACTTAGATCTATTGTGCA AACTGATCAGAATCTCGTCAGCAGGAACACCAGGGGCCATGGTGTCTTGCTGTTGCTGAA GAGGCTGTTTTTTTTTTTTGCAAAAAATAACCCAGATGCTTTTATATGGTGTTGTATGCC AAAATACATCTTTCATGATAAGCCCTTCCTCTGTCTTGGTTCTGCACTGCACGAGCGGTG TGCTTTGCCGGCTGCAGCCGCCAGCTGCTCCTTGCACCGGAGTGGGTCGATCCATACACC GACCATCGAATGCATCCTCATACCTTGGAACGCGGTGCTTGCACACAGGTGTGGGGACGA CCATGGTGAATGCCATGAGCAGCTGGCCGGTGCCCATCTGCTGCATACCAATGAGTTCAG CGGCACCCTGCTCAAGAGCCT
Protein Sequence (1070 aa)
>BART1_0-u27304.001 1070 150831_barley_pseudomolecules MPISNSTEPRDSRDPTSPAPSTSSSRSREACNLAEVDDPESAMSTVARLLEQLHGSLTSL PEKEVAIKRLLELAKAKKDARILIGSHSQAMPLFISILRSGASSAKVNAAALLSALCKEE DLRVKVLLGGCIPPLLSLLKSESAEAKKAAAEAIFEVSSGGLSDDHIGMKIFVTEGVVPT LWDLLNPKSRQDRIVEGFVTGALRNLCGDKDGYWKATLEAGGVEIITGLLSSKNTASQSN AASLLARLISAFSDSIPKIIAAGAVKALLQLLNRDDDIAVRESAADALEALSSKSTIAKK AVVDAGGLPVLIGAVVAPSKECMRGVTCHSLQSHAVCALSNICGGATSLLLYLGELCQSP RSAVSLADILGALAYTLMVYDGTDGKFFDPVEIESILVVLLKSHDSKLLLDRILEALASL YANACFSGRLDHSNAKKVLVGLVTMATDDVQDHLVHALTSLCCDGFGLWDALGKREGVQL LISLLGLSSEQHQEYAVSLLAILSDEVDDSKWAITAAGGIPPLVQLLETGSQRAKEDAAH IICNLCCHSDDIRACVESAGAVLALLWLLKSDSPRGQEASVKALKVLIRSADSATINQLL ALLLSDSVSSKAHAITVLGHVLVLAPQRDLIQNGAPANKGLRSLVLVLDSSNEESQECAA TVLADIFSMRQDICDILATDEIVQPFMKLLTSGNQVMATQSARALGALSRSANTMSKNKM SCIAEGDVQPLIEMAKTSSIDAAEAAIAALANLLSDSQIAKEALGDNIVQALTRVLKEGS LDGKISASRSLYHLLNQFPLCEVFPDYSLCCFIIHALLVCLSGISLEKVTSLDPLDVLAL MVMTKEGAHFSPPLRTAFLEAPEGLEPLVRCISVGLPPIQDKSIQILARLCQDQSSLLSE HINRSEGCIDSLVSRVMESTNMEIRISSAITLISALKDKREHSIEVLEASGHLKSLISAL IDMLKQESTSTSLDIEVWKPYTEKSLFNCEQDVLDVPESGKVLEETVARLLSLICSSHPR SKLTVMDLGGVEIVSDKLASASRQVHVSLFNLYFLLCCHYIFLVSSAAIT