- Transcript BART1_0-u26508.009
- Transcript IDBART1_0-u26508.009
- Gene IDBART1_0-u26508
Barley RTD
Exon Structure of BART1_0-u26508.009
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr4H | 1 | 14992074 | 14991386 | - |
| chr4H | 2 | 14993250 | 14993166 | - |
| chr4H | 3 | 14993415 | 14993347 | - |
| chr4H | 4 | 14993667 | 14993567 | - |
| chr4H | 5 | 14993855 | 14993772 | - |
| chr4H | 6 | 14994380 | 14994295 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 0 | 0 | 0 |
| morex | ETI | 0.690871 | 0.258067 | 0 |
| morex | LEA | 0 | 0 | 0 |
| morex | EPI | 0 | 0 | 0 |
| morex | ROO | 0 | 0 | 0 |
| morex | ROO2 | 0.620676 | 0 | 0 |
| morex | NOD | 0 | 0 | 0 |
| morex | RAC | 0 | 0 | 0 |
| morex | INF1 | 0 | 0 | 0 |
| morex | INF2 | 0 | 0 | 0 |
| morex | CAR5 | 0 | 0 | 0.502674 |
| morex | CAR15 | 0 | 0 | 0 |
| morex | LEM | 0 | 0 | 0 |
| morex | LOD | 0 | 0 | 0 |
| morex | PAL | 0 | 0 | 0 |
| morex | SEN | 0.397397 | 0 | 0 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os03g49520.1 | +3 | 3e-95 | 290 | 171/240 (71%) | protein|pinin/SDK/memA protein, putative, expressed |
| TAIR PP10 | AT1G15200 @ ARAPORT AT1G15200.2 @ TAIR |
+3 | 2e-55 | 187 | 106/187 (57%) | Symbols: | protein-protein interaction regulator family protein | chr1:5228477-5231017 REVERSE LENGTH=428 |
| BRACH PP3 | Bradi1g10810.1.p | +3 | 1e-105 | 317 | 186/242 (77%) | pacid=32798970 transcript=Bradi1g10810.1 locus=Bradi1g10810 ID=Bradi1g10810.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (1114 bp)
>BART1_0-u26508.009 1114 150831_barley_pseudomolecules CTATGGGCCAGGCACTATATGGAAGGCTCTAGGCTTGTATTACAGTAATGTCAATTAACT CAGGTGGCTTGCATTTGTTTTTTGAGGCTGATCAAAAGGCTCGTGAGGACAGTGAAAGAT TGCGGCAGCAAGTGCGGGAGCAAGCAGCTGAGAAGCGTAGGCGTGATATGACGCTTCGTG CTCGAGTAGCTGCTAAGTCAGAAGAAAAGAGGTTGGAGCTATTGTACATTCAGTGGTCTG AGCATCACAAAAAGCTGTCCAGTTTCTTAAGGTTATTTTTATTCCTGGTCCAAAAGTATC CATATTGACAATTAAATTGAGGGAAGATGCGTTTCTGATTGACAAAAGCTGAACCAGCTA TTTATTACATGCCGGCTAAACCAATAGTTGATGATCCGCTTATTGTTGAGCAAAACAAGG AAAAGGCATTTGAAGAATGGAAATCTGTGCGCAGAACGGAGCTCACACAGTTTCAAAAGC AAGTTGAGGAGCAGTATCTGTCTAACGTTGAGAGGCAGCTGGAAAGAATTCAGAATGCCC GGAATGCTCGGAGGGGGAACGTGCCTGCTAACATGCAGGAAATGGACAAGGAGCTGGACA CACACAGGGCGGAGCATGGCCCCAAGGCTCGGCGGATCCCCGACGGTGGCAACGACGAGG ATGATGATGTGGACGTGGACGACATGGCCGCGGAGGACGACCTGATGGATGAAGTGCTTG GCGTTAATGAGGCGATCAACGAGGACCCGACCAAGCCATCTGAAGAGGCTACCGATGTTG CCCCTGTACCCGAGGAGGCACAGTAGGCAAAGTTATTTGCAAGGTAGGCACTTACGCATT ATGATTCTATATCGTTGTAGTTGCCCTCTTCTGTTGTGACTGTATTGTTGTTGGGTTTTT GTCTTTGGGAATGTTGTGAGCTGTGTTTGCTGTTGAGGCCATATCCATACTTTTCATTAT TGTTATTGTCATTCGTACGTACTCTGCGTCTGCTCTTTTACGATCAAGTGTCAACCTGCG AAAACAATCATCATGCGATCAACCTGTTCTTCACCTGCGCCGTTAGCGTACAGGTGTTGC GGTACTGTTGATGACCTCTATCACTGTACGTTCA
Protein Sequence (145 aa)
>BART1_0-u26508.009 145 150831_barley_pseudomolecules MPAKPIVDDPLIVEQNKEKAFEEWKSVRRTELTQFQKQVEEQYLSNVERQLERIQNARNA RRGNVPANMQEMDKELDTHRAEHGPKARRIPDGGNDEDDDVDVDDMAAEDDLMDEVLGVN EAINEDPTKPSEEATDVAPVPEEAQ