- Gene BART1_0-u26508
- Gene IDBART1_0-u26508
- Location chr4H: 14989860 - 14997614
Matching HORVU genes
BarleyRTD transcripts were compared to the location of the IBSC 2017 Predicted Transcripts. Overlapping status is classified as Containing (HORVU is smaller than the BART), Contained (BART is smaller than the HORVU), Partial-Overlap (Overlap exists), and Undefined (the BART transcript has no overlapping HORVU).HORVU ID | Percentage overlap | BART Gene Direction | HORVU Gene Direction | Overlap Length | Gene Length Difference | Overlapping Status |
---|---|---|---|---|---|---|
HORVU4Hr1G006320 | 99.9 | - | - | 7745 | 96 | Partial-Overlap |
Transcripts from Gene BART1_0-u26508
Transcript | Length(bp) | Description |
---|---|---|
BART1_0-u26508.001 | 1893 | 1893 bp MSTRG.26508.1 MSTRG.26508 |
BART1_0-u26508.002 | 1864 | 1864 bp MSTRG.26508.2 MSTRG.26508 |
BART1_0-u26508.003 | 2058 | 2058 bp MSTRG.26508.3 MSTRG.26508 |
BART1_0-u26508.004 | 1979 | 1979 bp MSTRG.26508.4 MSTRG.26508 |
BART1_0-u26508.005 | 1865 | 1865 bp MSTRG.26508.5 MSTRG.26508 |
BART1_0-u26508.006 | 1931 | 1931 bp MSTRG.26508.6 MSTRG.26508 |
BART1_0-u26508.007 | 2200 | 2200 bp MSTRG.26508.7 MSTRG.26508 |
BART1_0-u26508.008 | 1891 | 1891 bp MSTRG.26508.8 MSTRG.26508 |
BART1_0-u26508.009 | 1114 | 1114 bp MSTRG.26508.9 MSTRG.26508 |
BART1_0-u26508.010 | 1193 | 1193 bp MSTRG.26508.10 MSTRG.26508 |
Exon Structure of BART1_0-u26508
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-30)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|---|---|---|---|---|---|
Rice PP7 | LOC_Os03g49520.1 | +1 | 1e-142 | 424 | 244/341 (72%) | protein|pinin/SDK/memA protein, putative, expressed |
TAIR PP10 | AT1G15200 @ ARAPORT AT1G15200.2 @ TAIR |
+1 | 4e-78 | 257 | 156/297 (53%) | Symbols: | protein-protein interaction regulator family protein | chr1:5228477-5231017 REVERSE LENGTH=428 |
BRACH PP3 | Bradi1g10810.1.p | +1 | 6e-165 | 481 | 274/353 (78%) | pacid=32798970 transcript=Bradi1g10810.1 locus=Bradi1g10810 ID=Bradi1g10810.1.v3.1 annot-version=v3.1 |
GO Annotation
Generated by PANNZERGO ID | GO terms |
---|---|
GO:0035145 | exon-exon junction complex |
GO:0003700 | DNA-binding transcription factor activity |
GO:0071013 | catalytic step 2 spliceosome |
GO:0016705 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen |
GO:0005506 | iron ion binding |
GO:0016021 | integral component of membrane |
GO:0006355 | regulation of transcription, DNA-templated |
GO:0043565 | sequence-specific DNA binding |
GO:0055114 | oxidation-reduction process |
GO:0020037 | heme binding |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons