Matching HORVU genes

BarleyRTD transcripts were compared to the location of the IBSC 2017 Predicted Transcripts. Overlapping status is classified as Containing (HORVU is smaller than the BART), Contained (BART is smaller than the HORVU), Partial-Overlap (Overlap exists), and Undefined (the BART transcript has no overlapping HORVU).

HORVU ID	Percentage overlap	BART Gene Direction	HORVU Gene Direction	Overlap Length	Gene Length Difference	Overlapping Status
HORVU4Hr1G006320	99.9	-	-	7745	96	Partial-Overlap

Transcripts from Gene BART1_0-u26508

Transcript	Length(bp)	Description
BART1_0-u26508.001	1893	1893 bp MSTRG.26508.1 MSTRG.26508
BART1_0-u26508.002	1864	1864 bp MSTRG.26508.2 MSTRG.26508
BART1_0-u26508.003	2058	2058 bp MSTRG.26508.3 MSTRG.26508
BART1_0-u26508.004	1979	1979 bp MSTRG.26508.4 MSTRG.26508
BART1_0-u26508.005	1865	1865 bp MSTRG.26508.5 MSTRG.26508
BART1_0-u26508.006	1931	1931 bp MSTRG.26508.6 MSTRG.26508
BART1_0-u26508.007	2200	2200 bp MSTRG.26508.7 MSTRG.26508
BART1_0-u26508.008	1891	1891 bp MSTRG.26508.8 MSTRG.26508
BART1_0-u26508.009	1114	1114 bp MSTRG.26508.9 MSTRG.26508
BART1_0-u26508.010	1193	1193 bp MSTRG.26508.10 MSTRG.26508

Exon Structure of BART1_0-u26508

grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons

Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-30)

Database	Hit	Frame	E-value	Score	% Identity	Description
Rice PP7	LOC_Os03g49520.1	+1	1e-142	424	244/341 (72%)	protein|pinin/SDK/memA protein, putative, expressed
TAIR PP10	AT1G15200 @ ARAPORT AT1G15200.2 @ TAIR	+1	4e-78	257	156/297 (53%)	Symbols: | protein-protein interaction regulator family protein | chr1:5228477-5231017 REVERSE LENGTH=428
BRACH PP3	Bradi1g10810.1.p	+1	6e-165	481	274/353 (78%)	pacid=32798970 transcript=Bradi1g10810.1 locus=Bradi1g10810 ID=Bradi1g10810.1.v3.1 annot-version=v3.1

GO Annotation

Generated by PANNZER

GO ID	GO terms
GO:0035145	exon-exon junction complex
GO:0003700	DNA-binding transcription factor activity
GO:0071013	catalytic step 2 spliceosome
GO:0016705	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0005506	iron ion binding
GO:0016021	integral component of membrane
GO:0006355	regulation of transcription, DNA-templated
GO:0043565	sequence-specific DNA binding
GO:0055114	oxidation-reduction process
GO:0020037	heme binding

Barley PseudoMolecules GBrowse

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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons