- Transcript BART1_0-u26461.016
- Transcript IDBART1_0-u26461.016
- Gene IDBART1_0-u26461
Barley RTD
Exon Structure of BART1_0-u26461.016
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr4H | 1 | 13553293 | 13552767 | - |
| chr4H | 2 | 13554330 | 13554251 | - |
| chr4H | 3 | 13554582 | 13554412 | - |
| chr4H | 4 | 13555708 | 13555595 | - |
| chr4H | 5 | 13556062 | 13555928 | - |
| chr4H | 6 | 13556270 | 13556187 | - |
| chr4H | 7 | 13557718 | 13557579 | - |
| chr4H | 8 | 13561193 | 13561081 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 0.481456 | 0 | 1.83793 |
| morex | ETI | 0 | 1.24965 | 0 |
| morex | LEA | 0 | 0.400761 | 0 |
| morex | EPI | 0 | 2.81643 | 0.000544182 |
| morex | ROO | 0 | 0 | 0 |
| morex | ROO2 | 0 | 0.0000416611 | 0.0181388 |
| morex | NOD | 0 | 0 | 0 |
| morex | RAC | 0.000133426 | 0.000000298338 | 0.00000680252 |
| morex | INF1 | 0.891268 | 2.39397 | 2.49327 |
| morex | INF2 | 3.32016 | 0.475673 | 0 |
| morex | CAR5 | 0 | 1.03512 | 0 |
| morex | CAR15 | 0.381067 | 0 | 0 |
| morex | LEM | 1.3044 | 1.16546 | 0.0000020624 |
| morex | LOD | 4.08046 | 2.64485 | 0 |
| morex | PAL | 0 | 0.0000000202716 | 1.42973 |
| morex | SEN | 0.707227 | 0 | 0 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os03g42350.1 | +2 | 4e-77 | 246 | 137/259 (53%) | protein|ankyrin, putative, expressed |
| TAIR PP10 | None | - | - | - | - | - |
| BRACH PP3 | Bradi2g23634.1.p | +2 | 7e-78 | 248 | 141/270 (52%) | pacid=32774779 transcript=Bradi2g23634.1 locus=Bradi2g23634 ID=Bradi2g23634.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (1364 bp)
>BART1_0-u26461.016 1364 150831_barley_pseudomolecules CTTCCTCGCTGCTCTTTTCTCCATTCAAAGCTCCAAGCCCCTTCTCCACCCCCACCCTAG CACATCCTCCTCGACCGACGCCATGGTGTCGCCCTACCGAGCTCATTCCGAAGGTAGTTG TGAAATGGTAGAGCTTTTGCTTGCAAAAGGAGCTTACGTTGACCCGGTATGTGCTCGTGG AACACCACTTCATATTGCTGCTGGTGGAGGGCAGTATGGTGCTATGAAGATTTTATTGGA CCACAGTGCAGATTACAACAAGATGGTAGATGGTGTGACACCTCTTATGGCTGCTAAAGA TGCCAACTCAACGGAATGTATCAAGCTCCTAGTTAAGCTGTGGCATCCTGCAATTTGTGA CCCCTTGTACCGGACACTTCCACAACCATTTAAAAAAAAACTTGTCGCATATTGAGGCTG GGGAGGACTTCTGCATATGTGCCATGTTGATATTAATAGTTACCTCAACATGGTTCAGAA GGAGCCTATGCTTAAACGAGAAATCACGGCATCAGAGCTTATATCACTAGGGAGTATCTC TTTAAAGAAAAAAGATTATGTTGTCGCAGCAAAATTGTACAGTCAGGCAATGCAGCTTGA TCCTGGTGATGCAGTCTTGCTCTCAGACAGGAGCCTTTGTTGGCTTCACATGGGATATGG AAGAAAGGCTTTGCTAGATGCTAATCAATGCAGAAAAATGCGGCCTCTCTGGCCAAAAGC TTGTCGCCGGCAGGGTGAAGCTCTGATGCTACTGAAGGACTATGAGGGTGCAAGTGAACG GTTCTTGGATGGACTCAAATTGGACCCAGTGGACACTGCTATCGAGGATGCATTACGGGA AGCTATGAAGTCCTTGATGACGTCTCGGAGCACGAAAGCCAATTGACTATTTGCGTGTCG CAGGGAAATCAGCTGAAGACTTGAAACGGGTCAGGAGTTTCTCCATTTTGCGCAAAGACC GATTTCCTTTAGAAAGTAAAGCGACGTGTCTCATGGCCTGATGAGAGTGTATTACCGTCG GCATGTTTTGTATGAGCATGACTGTTGATGCTTGCAGTAGTACCCCGCGGAAACTCGTCA GTTGCCATCTATCTGTCGTGTATTACAGGCTCTTATGTCAGGTATTTGGGTCTTCTGAAG CTCACTCGTCTGCCGCTCCTGGTGCAGCGTCCCCGAATGATCGCAGCCTCTGCATTTGTC TTGTTGCGGTTTTGCTGAATTGCCTCCTGGCTCTGTAGTGTTTTAACTACTCAACGATGG TACAATGTAGTGAAGATGGAGATATCTTGTGTAGGTTTTCTTCGTCCTGTGGGTGCATAA TTAGAGGAGCGTGATGTAGGCTAAGTTTTGGTAGCTGCTATCCC
Protein Sequence (149 aa)
>BART1_0-u26461.016 149 150831_barley_pseudomolecules MCHVDINSYLNMVQKEPMLKREITASELISLGSISLKKKDYVVAAKLYSQAMQLDPGDAV LLSDRSLCWLHMGYGRKALLDANQCRKMRPLWPKACRRQGEALMLLKDYEGASERFLDGL KLDPVDTAIEDALREAMKSLMTSRSTKAN