Matching HORVU genes

BarleyRTD transcripts were compared to the location of the IBSC 2017 Predicted Transcripts. Overlapping status is classified as Containing (HORVU is smaller than the BART), Contained (BART is smaller than the HORVU), Partial-Overlap (Overlap exists), and Undefined (the BART transcript has no overlapping HORVU).

HORVU ID	Percentage overlap	BART Gene Direction	HORVU Gene Direction	Overlap Length	Gene Length Difference	Overlapping Status
HORVU4Hr1G005710	99.5	-	-	9461	-46	Containing

Transcripts from Gene BART1_0-u26461

Transcript	Length(bp)	Description
BART1_0-u26461.001	2669	2669 bp MSTRG.26461.1 MSTRG.26461
BART1_0-u26461.002	2291	2291 bp MSTRG.26461.2 MSTRG.26461
BART1_0-u26461.003	2357	2357 bp MSTRG.26461.3 MSTRG.26461
BART1_0-u26461.004	2426	2426 bp MSTRG.26461.4 MSTRG.26461
BART1_0-u26461.005	1970	1970 bp MSTRG.26461.5 MSTRG.26461
BART1_0-u26461.006	2817	2817 bp MSTRG.26461.6 MSTRG.26461
BART1_0-u26461.007	2107	2107 bp MSTRG.26461.7 MSTRG.26461
BART1_0-u26461.008	1964	1964 bp MSTRG.26461.8 MSTRG.26461
BART1_0-u26461.009	1696	1696 bp MSTRG.26461.9 MSTRG.26461
BART1_0-u26461.010	1770	1770 bp MSTRG.26461.10 MSTRG.26461
BART1_0-u26461.011	1649	1649 bp MSTRG.26461.11 MSTRG.26461
BART1_0-u26461.012	2716	2716 bp MSTRG.26461.12 MSTRG.26461
BART1_0-u26461.013	2834	2834 bp MSTRG.26461.13 MSTRG.26461
BART1_0-u26461.014	1261	1261 bp MSTRG.26461.14 MSTRG.26461
BART1_0-u26461.015	829	829 bp MSTRG.26461.15 MSTRG.26461
BART1_0-u26461.016	1364	1364 bp MSTRG.26461.16 MSTRG.26461
BART1_0-u26461.017	1461	1461 bp MSTRG.26461.17 MSTRG.26461
BART1_0-u26461.018	711	711 bp MSTRG.26461.18 MSTRG.26461

Exon Structure of BART1_0-u26461

grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons

Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-30)

Database	Hit	Frame	E-value	Score	% Identity	Description
Rice PP7	LOC_Os02g29160.1	+2	1e-59	212	149/385 (39%)	protein|ankyrin, putative, expressed
TAIR PP10	None	-	-	-	-	-
BRACH PP3	Bradi2g23634.2.p	+2	2e-44	165	84/142 (59%)	pacid=32774780 transcript=Bradi2g23634.2 locus=Bradi2g23634 ID=Bradi2g23634.2.v3.1 annot-version=v3.1

GO Annotation

Generated by PANNZER

GO ID	GO terms
GO:0016021	integral component of membrane
GO:0016829	lyase activity
GO:0000502	proteasome complex
GO:0016310	phosphorylation
GO:0016301	kinase activity

Barley PseudoMolecules GBrowse

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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons