- Transcript BART1_0-u26461.014
- Transcript IDBART1_0-u26461.014
- Gene IDBART1_0-u26461
Barley RTD
Exon Structure of BART1_0-u26461.014
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr4H | 1 | 13553293 | 13552732 | - |
| chr4H | 2 | 13554330 | 13554251 | - |
| chr4H | 3 | 13554582 | 13554412 | - |
| chr4H | 4 | 13555708 | 13555595 | - |
| chr4H | 5 | 13556270 | 13556187 | - |
| chr4H | 6 | 13557718 | 13557579 | - |
| chr4H | 7 | 13561190 | 13561081 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 0.388134 | 1.21845 | 0 |
| morex | ETI | 0 | 0 | 0 |
| morex | LEA | 0 | 0 | 0 |
| morex | EPI | 0 | 0 | 0 |
| morex | ROO | 0 | 0.266594 | 0 |
| morex | ROO2 | 0 | 1.226 | 1.26404 |
| morex | NOD | 0 | 0 | 0 |
| morex | RAC | 0 | 0 | 0 |
| morex | INF1 | 0.7524 | 0 | 0 |
| morex | INF2 | 0 | 0.609691 | 0 |
| morex | CAR5 | 0 | 0 | 0 |
| morex | CAR15 | 0 | 0 | 0 |
| morex | LEM | 0 | 0 | 0 |
| morex | LOD | 0 | 0 | 0 |
| morex | PAL | 0 | 0 | 0 |
| morex | SEN | 0.00000000482511 | 0 | 0 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os03g42350.1 | +2 | 1e-74 | 239 | 132/258 (51%) | protein|ankyrin, putative, expressed |
| TAIR PP10 | None | - | - | - | - | - |
| BRACH PP3 | Bradi2g23634.1.p | +2 | 9e-77 | 244 | 136/265 (51%) | pacid=32774779 transcript=Bradi2g23634.1 locus=Bradi2g23634 ID=Bradi2g23634.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (1261 bp)
>BART1_0-u26461.014 1261 150831_barley_pseudomolecules CCTCGCTGCTCTTTTCTCCATTCAAAGCTCCAAGCCCCTTCTCCACCCCCACCCTAGCAC ATCCTCCTCGACCGACGCCATGGTGTCGCCCTACCGAGCTCATTCCGAAGGTAGTTGTGA AATGGTAGAGCTTTTGCTTGCAAAAGGAGCTTACGTTGACCCGGTATGTGCTCGTGGAAC ACCACTTCATATTGCTGCTGGTGGAGGGCAGTATGGTGCTATGAAGATTTTATTGGACCA CAGTGCAGATTACAACAAGATGGTAGATGGTGTGACACCTCTTATGGCTGCTAAAGATGC CAACTCAACGGAATGTATCAAGCTCCTAGTTAAGGTTCAGAAGGAGCCTATGCTTAAACG AGAAATCACGGCATCAGAGCTTATATCACTAGGGAGTATCTCTTTAAAGAAAAAAGATTA TGTTGTCGCAGCAAAATTGTACAGTCAGGCAATGCAGCTTGATCCTGGTGATGCAGTCTT GCTCTCAGACAGGAGCCTTTGTTGGCTTCACATGGGATATGGAAGAAAGGCTTTGCTAGA TGCTAATCAATGCAGAAAAATGCGGCCTCTCTGGCCAAAAGCTTGTCGCCGGCAGGGTGA AGCTCTGATGCTACTGAAGGACTATGAGGGTGCAAGTGAACGGTTCTTGGATGGACTCAA ATTGGACCCAGTGGACACTGCTATCGAGGATGCATTACGGGAAGCTATGAAGTCCTTGAT GACGTCTCGGAGCACGAAAGCCAATTGACTATTTGCGTGTCGCAGGGAAATCAGCTGAAG ACTTGAAACGGGTCAGGAGTTTCTCCATTTTGCGCAAAGACCGATTTCCTTTAGAAAGTA AAGCGACGTGTCTCATGGCCTGATGAGAGTGTATTACCGTCGGCATGTTTTGTATGAGCA TGACTGTTGATGCTTGCAGTAGTACCCCGCGGAAACTCGTCAGTTGCCATCTATCTGTCG TGTATTACAGGCTCTTATGTCAGGTATTTGGGTCTTCTGAAGCTCACTCGTCTGCCGCTC CTGGTGCAGCGTCCCCGAATGATCGCAGCCTCTGCATTTGTCTTGTTGCGGTTTTGCTGA ATTGCCTCCTGGCTCTGTAGTGTTTTAACTACTCAACGATGGTACAATGTAGTGAAGATG GAGATATCTTGTGTAGGTTTTCTTCGTCCTGTGGGTGCATAATTAGAGGAGCGTGATGTA GGCTAAGTTTTGGTAGCTGCTATCCCGTCTTGTTTTCCTGACTTCAGCTGGTTGCTGTGT G
Protein Sequence (222 aa)
>BART1_0-u26461.014 222 150831_barley_pseudomolecules MVSPYRAHSEGSCEMVELLLAKGAYVDPVCARGTPLHIAAGGGQYGAMKILLDHSADYNK MVDGVTPLMAAKDANSTECIKLLVKVQKEPMLKREITASELISLGSISLKKKDYVVAAKL YSQAMQLDPGDAVLLSDRSLCWLHMGYGRKALLDANQCRKMRPLWPKACRRQGEALMLLK DYEGASERFLDGLKLDPVDTAIEDALREAMKSLMTSRSTKAN