- Transcript BART1_0-u26461.013
- Transcript IDBART1_0-u26461.013
- Gene IDBART1_0-u26461
Barley RTD
Exon Structure of BART1_0-u26461.013
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr4H | 1 | 13553293 | 13552731 | - |
| chr4H | 2 | 13554330 | 13554251 | - |
| chr4H | 3 | 13554582 | 13554412 | - |
| chr4H | 4 | 13556062 | 13555595 | - |
| chr4H | 5 | 13556270 | 13556187 | - |
| chr4H | 6 | 13557718 | 13557579 | - |
| chr4H | 7 | 13559790 | 13559662 | - |
| chr4H | 8 | 13560835 | 13559901 | - |
| chr4H | 9 | 13561000 | 13560935 | - |
| chr4H | 10 | 13561278 | 13561081 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 0.447762 | 1.19453 | 1.99217 |
| morex | ETI | 2.25637 | 1.04194 | 1.10487 |
| morex | LEA | 0.992397 | 1.05437 | 0 |
| morex | EPI | 1.96846 | 2.29406 | 2.13902 |
| morex | ROO | 0.849571 | 1.65918 | 0.337713 |
| morex | ROO2 | 0.694028 | 0.444839 | 1.24854 |
| morex | NOD | 0.940471 | 0.604897 | 0.795068 |
| morex | RAC | 4.95557 | 3.64589 | 3.66289 |
| morex | INF1 | 7.19487 | 6.27681 | 6.84151 |
| morex | INF2 | 10.7358 | 12.3821 | 11.918 |
| morex | CAR5 | 8.37003 | 5.58917 | 5.58891 |
| morex | CAR15 | 0.69687 | 0.382188 | 0.386228 |
| morex | LEM | 3.22437 | 2.99737 | 2.91807 |
| morex | LOD | 2.59094 | 1.97458 | 1.73946 |
| morex | PAL | 3.77682 | 4.6396 | 3.24444 |
| morex | SEN | 0.258265 | 0.0834754 | 0.270353 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os02g29160.1 | +2 | 1e-59 | 212 | 149/385 (39%) | protein|ankyrin, putative, expressed |
| TAIR PP10 | None | - | - | - | - | - |
| BRACH PP3 | Bradi2g23634.2.p | +2 | 2e-44 | 165 | 84/142 (59%) | pacid=32774780 transcript=Bradi2g23634.2 locus=Bradi2g23634 ID=Bradi2g23634.2.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (2834 bp)
>BART1_0-u26461.013 2834 150831_barley_pseudomolecules AAAAGAAAAAAAGAAAGACGACGGCGCTCGCTCGCCCATTTTCACTTGTCCTCGCGCTCG CGCGTACGCCTCGCTTTAGTTTCGTCTTCCTCGCTGCTCTTTTCTCCATTCAAAGCTCCA AGCCCCTTCTCCACCCCCACCCTAGCACATCCTCCTCGACCGACGCCATGGTGTCGCCCT ACCGAGCTCATTCCGAAGTCCACGACCCGATGCTGGACATGGTCTTCCAGGCGGCATCCG ACAACGACCTCCCCCGCTTAAAGTCGCTGGTCGTGATGCTGGACTTGGGCAGGGGCCGCC CCAAGAAGGTGATTGAGGACTTGAGGGTGGAAGACGATCCCAAGCTTGAAGGTTTCAGCG CGCTGCACATCGCGGCCAGGGGGAGCCTGGAGGTGTGCAGGTACCTCGTCGAGGAGCTGC TGGTGGATGTGGATCTGGTCGACAAGGAAGGTCCAACTATCTTCAAAACCCTAATCTTTC GGTGCAGGCTTCGTCGAATTGCATGGAGTGCCTATTTTACATGCTGGAATTTGTTGTTCG CTAGGGCTGCTTCATCTGTAGGTCAGGTCTCACGATATCCGACTGTTTTGTGCTTTCTCT GGGTTTGGCATAGAGGTGCATTATGAGAGCCAGCTTTTGCCATGGCTCCAGGCTCAGCGC AACACAGTCCGGCAACCATAAACATAGCCTAAGATCATCTACGTCAGTATGAACCAATGT ATCATAGGCACCAATATTTTTCTCACCAAATAAAATCATGTTTTGTCATATCCTGTTGTG CTAACTCATGATCATGCAGCTTTATACGGAAAAAGTCGGCCTTTTTAAGGAAGAAATAAG TCGGTCTTCATTATGATACTGAATGTGAATACCCTACATAAGCACCGTTCATATAAATAA TTAAATAGGCTACTCTTTGAGGGCAAATTAATGTTTATTTTAGGATAGTTTGGTTGTTTA GTTATTGCACACATGTATGCACCCCAGCTCTGAGGATGTATTTGATTCTTCTATTCGGGT AGTCGAATGTCTAATTTTCATGCGTCAGTTCCATTTAACCAATACTCTCTCGAGCATTAT GAAAATCCTGCGTCATATCGTATCTAACTCGATGGGTCTACTTTGTTTGTCTTGGGGAGC CATATCTAAATTCTATGCTCTCAGAGAAGACAGGGCAGTGTTAGGAAACTTCTGTGGTGG TAGAACACCTCTGTTTTTTGCAACATACTGCAATGGGGGTACTGCTGAGTATCTTCTTGA TCATGGAGCTAATCCAGACAAAGCCGATAACAATGGGGGTTTCCTGTTACATTATGCTGC TGAAATAGGTAGTTGTGAAATGGTAGAGCTTTTGCTTGCAAAAGGAGCTTACGTTGACCC GGTATGTGCTCGTGGAACACCACTTCATATTGCTGCTGGTGGAGGGCAGTATGGTGCTAT GAAGATTTTATTGGACCACAGTGCAGATTACAACAAGATGGTAGATGGTGTGACACCTCT TATGGCTGCTAAAGATGCCAACTCAACGGAATGTATCAAGCTCCTAGTTAAGCTGTGGCA TCCTGCAATTTGTGACCCCTTGTACCGGACACTTCCACAACCATTTAAAAAAAAACTTGT CGCATATTGAGGCTGGGGAGGACTTCTGCATATGTGCCATGTTGATATTAATAGTTACCT CAACATGGTACCGGTTTATGACAATTTTGGTGGTAGTTTTTGTACTCACAATACTGAGCA TGGATGTTAGGAGATACGTGTGCAGTTATAGAAATTTGAGAAAAGATATGCTTATGTTAT CAGATCCTTTTTCCTTCATATATTTACAGCAAAAAATCATGTAGTTCGTTCAGATATTAT GTATCGCATGCATCATGCATAGAATTGATTAATTGATGTTCTGTAGGTTCAGAAGGAGCC TATGCTTAAACGAGAAATCACGGCATCAGAGCTTATATCACTAGGGAGTATCTCTTTAAA GAAAAAAGATTATGTTGTCGCAGCAAAATTGTACAGTCAGGCAATGCAGCTTGATCCTGG TGATGCAGTCTTGCTCTCAGACAGGAGCCTTTGTTGGCTTCACATGGGATATGGAAGAAA GGCTTTGCTAGATGCTAATCAATGCAGAAAAATGCGGCCTCTCTGGCCAAAAGCTTGTCG CCGGCAGGGTGAAGCTCTGATGCTACTGAAGGACTATGAGGGTGCAAGTGAACGGTTCTT GGATGGACTCAAATTGGACCCAGTGGACACTGCTATCGAGGATGCATTACGGGAAGCTAT GAAGTCCTTGATGACGTCTCGGAGCACGAAAGCCAATTGACTATTTGCGTGTCGCAGGGA AATCAGCTGAAGACTTGAAACGGGTCAGGAGTTTCTCCATTTTGCGCAAAGACCGATTTC CTTTAGAAAGTAAAGCGACGTGTCTCATGGCCTGATGAGAGTGTATTACCGTCGGCATGT TTTGTATGAGCATGACTGTTGATGCTTGCAGTAGTACCCCGCGGAAACTCGTCAGTTGCC ATCTATCTGTCGTGTATTACAGGCTCTTATGTCAGGTATTTGGGTCTTCTGAAGCTCACT CGTCTGCCGCTCCTGGTGCAGCGTCCCCGAATGATCGCAGCCTCTGCATTTGTCTTGTTG CGGTTTTGCTGAATTGCCTCCTGGCTCTGTAGTGTTTTAACTACTCAACGATGGTACAAT GTAGTGAAGATGGAGATATCTTGTGTAGGTTTTCTTCGTCCTGTGGGTGCATAATTAGAG GAGCGTGATGTAGGCTAAGTTTTGGTAGCTGCTATCCCGTCTTGTTTTCCTGACTTCAGC TGGTTGCTGTGTGG
Protein Sequence (217 aa)
>BART1_0-u26461.013 217 150831_barley_pseudomolecules MHPSSEDVFDSSIRVVECLIFMRQFHLTNTLSSIMKILRHIVSNSMGLLCLSWGAISKFY ALREDRAVLGNFCGGRTPLFFATYCNGGTAEYLLDHGANPDKADNNGGFLLHYAAEIGSC EMVELLLAKGAYVDPVCARGTPLHIAAGGGQYGAMKILLDHSADYNKMVDGVTPLMAAKD ANSTECIKLLVKLWHPAICDPLYRTLPQPFKKKLVAY