- Transcript BART1_0-u26461.012
- Transcript IDBART1_0-u26461.012
- Gene IDBART1_0-u26461
Barley RTD
Exon Structure of BART1_0-u26461.012
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr4H | 1 | 13553293 | 13552730 | - |
| chr4H | 2 | 13554582 | 13554251 | - |
| chr4H | 3 | 13555702 | 13555595 | - |
| chr4H | 4 | 13556062 | 13555928 | - |
| chr4H | 5 | 13556270 | 13556187 | - |
| chr4H | 6 | 13557718 | 13557579 | - |
| chr4H | 7 | 13560835 | 13559662 | - |
| chr4H | 8 | 13561000 | 13560935 | - |
| chr4H | 9 | 13561193 | 13561081 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 0.535206 | 2.74388 | 0 |
| morex | ETI | 0 | 0.00000000320465 | 0.30996 |
| morex | LEA | 1.731 | 0 | 1.9446 |
| morex | EPI | 0.657266 | 0.0850284 | 0 |
| morex | ROO | 0.0962829 | 0.00567055 | 0.355781 |
| morex | ROO2 | 0 | 0.322665 | 0 |
| morex | NOD | 0 | 0.470588 | 0.172652 |
| morex | RAC | 0.273492 | 0.319128 | 0.200922 |
| morex | INF1 | 4.1486 | 7.14501 | 6.82427 |
| morex | INF2 | 9.74744 | 4.36113 | 6.61064 |
| morex | CAR5 | 3.50316 | 5.03778 | 4.52372 |
| morex | CAR15 | 0 | 0.00889316 | 0 |
| morex | LEM | 0 | 0 | 0.787623 |
| morex | LOD | 0 | 0.49311 | 0.000110883 |
| morex | PAL | 0 | 0.452754 | 1.07994 |
| morex | SEN | 0.289126 | 0.100473 | 0 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os03g42350.1 | +3 | 8e-77 | 257 | 157/329 (48%) | protein|ankyrin, putative, expressed |
| TAIR PP10 | None | - | - | - | - | - |
| BRACH PP3 | Bradi2g23634.1.p | +3 | 1e-83 | 274 | 160/326 (49%) | pacid=32774779 transcript=Bradi2g23634.1 locus=Bradi2g23634 ID=Bradi2g23634.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (2716 bp)
>BART1_0-u26461.012 2716 150831_barley_pseudomolecules CTTCCTCGCTGCTCTTTTCTCCATTCAAAGCTCCAAGCCCCTTCTCCACCCCCACCCTAG CACATCCTCCTCGACCGACGCCATGGTGTCGCCCTACCGAGCTCATTCCGAAGTCCACGA CCCGATGCTGGACATGGTCTTCCAGGCGGCATCCGACAACGACCTCCCCCGCTTAAAGTC GCTGGTCGTGATGCTGGACTTGGGCAGGGGCCGCCCCAAGAAGGTGATTGAGGACTTGAG GGTGGAAGACGATCCCAAGCTTGAAGGTTTCAGCGCGCTGCACATCGCGGCCAGGGGGAG CCTGGAGGTGTGCAGGTACCTCGTCGAGGAGCTGCTGGTGGATGTGGATCTGGTCGACAA GGAAGGTCCAACTATCTTCAAAACCCTAATCTTTCGGTGCAGGCTTCGTCGAATTGCATG GAGTGCCTATTTTACATGCTGGAATTTGTTGTTCGCTAGGGCTGCTTCATCTGTAGGTCA GGTCTCACGATATCCGACTGTTTTGTGCTTTCTCTGGGTTTGGCATAGAGGTGCATTATG AGAGCCAGCTTTTGCCATGGCTCCAGGCTCAGCGCAACACAGTCCGGCAACCATAAACAT AGCCTAAGATCATCTACGTCAGTATGAACCAATGTATCATAGGCACCAATATTTTTCTCA CCAAATAAAATCATGTTTTGTCATATCCTGTTGTGCTAACTCATGATCATGCAGCTTTAT ACGGAAAAAGTCGGCCTTTTTAAGGAAGAAATAAGTCGGTCTTCATTATGATACTGAATG TGAATACCCTACATAAGCACCGTTCATATAAATAATTAAATAGGCTACTCTTTGAGGGCA AATTAATGTTTATTTTAGGATAGTTTGGTTGTTTAGTTATTGCACACATGTATGCACCCC AGCTCTGAGGATGTATTTGATTCTTCTATTCGGGTAGTCGAATGTCTAATTTTCATGCGT CAGTTCCATTTAACCAATACTCTCTCGAGCATTATGAAAATCCTGCGTCATATCGTATCT AACTCGATGGGTCTACTTTGTTTGTCTTGGGGAGCCATATCTAAATTCTATGCTCTCAGA GAAGACAGGGCAGTGTTAGGAAACTTCTGTGGTGGTATTCTTTTGGAGATAAGACATGCT TTGATACAAAAAAGATCTCATTTCTTGCTACGCTGAGAAGTGCTTTGATATAATTTCATT TTTGTGTGTTTGTTTGCTTTATAGGTAGAACACCTCTGTTTTTTGCAACATACTGCAATG GGGGTACTGCTGAGTATCTTCTTGATCATGGAGCTAATCCAGACAAAGCCGATAACAATG GGGGTTTCCTGTTACATTATGCTGCTGAAATAGGTAGTTGTGAAATGGTAGAGCTTTTGC TTGCAAAAGGAGCTTACGTTGACCCGGTATGTGCTCGTGGAACACCACTTCATATTGCTG CTGGTGGAGGGCAGTATGGTGCTATGAAGATTTTATTGGACCACAGTGCAGATTACAACA AGATGGTAGATGGTGTGACACCTCTTATGGCTGCTAAAGATGCCAACTCAACGGAATGTA TCAAGCTCCTAGTTAAGCTGTGGCATCCTGCAATTTGTGACCCCTTGTACCGGACACTTC CACAACCATTTAAAAAAAAACTTGTCGCATATTGAGGCTGGGGAGGACTTCTGCATATGT GCCATGTTGATATTAATAGTTACCTCAACATGAAGGAGCCTATGCTTAAACGAGAAATCA CGGCATCAGAGCTTATATCACTAGGGAGTATCTCTTTAAAGAAAAAAGATTATGTTGTCG CAGCAAAATTGTACAGTCAGGCAATGCAGCTTGATCCTGGTGATGCAGTCTTGCTCTCAG ACAGGAGCCTTTGTTGGCTTCACATGGGATATGGAAGAAAGGCTTTGCTAGATGCTAATC AATGCAGAAAAATGCGGCCTCTCTGGCCAAAAGCTTGTCGCCGGCAGGGTGAAGCTCTGA TGCTACTGAAGGTTACATAGAGGATATGGCTGACTGTTTTCTCTTGGTATTGCAAATTGT TTATGGTCGCTCACTTGGTCTTTTATCATCAGGACTATGAGGGTGCAAGTGAACGGTTCT TGGATGGACTCAAATTGGACCCAGTGGACACTGCTATCGAGGATGCATTACGGGAAGCTA TGAAGTCCTTGATGACGTCTCGGAGCACGAAAGCCAATTGACTATTTGCGTGTCGCAGGG AAATCAGCTGAAGACTTGAAACGGGTCAGGAGTTTCTCCATTTTGCGCAAAGACCGATTT CCTTTAGAAAGTAAAGCGACGTGTCTCATGGCCTGATGAGAGTGTATTACCGTCGGCATG TTTTGTATGAGCATGACTGTTGATGCTTGCAGTAGTACCCCGCGGAAACTCGTCAGTTGC CATCTATCTGTCGTGTATTACAGGCTCTTATGTCAGGTATTTGGGTCTTCTGAAGCTCAC TCGTCTGCCGCTCCTGGTGCAGCGTCCCCGAATGATCGCAGCCTCTGCATTTGTCTTGTT GCGGTTTTGCTGAATTGCCTCCTGGCTCTGTAGTGTTTTAACTACTCAACGATGGTACAA TGTAGTGAAGATGGAGATATCTTGTGTAGGTTTTCTTCGTCCTGTGGGTGCATAATTAGA GGAGCGTGATGTAGGCTAAGTTTTGGTAGCTGCTATCCCGTCTTGTTTTCCTGACTTCAG CTGGTTGCTGTGTGGG
Protein Sequence (152 aa)
>BART1_0-u26461.012 152 150831_barley_pseudomolecules MVSPYRAHSEVHDPMLDMVFQAASDNDLPRLKSLVVMLDLGRGRPKKVIEDLRVEDDPKL EGFSALHIAARGSLEVCRYLVEELLVDVDLVDKEGPTIFKTLIFRCRLRRIAWSAYFTCW NLLFARAASSVGQVSRYPTVLCFLWVWHRGAL