- Transcript BART1_0-u26461.008
- Transcript IDBART1_0-u26461.008
- Gene IDBART1_0-u26461
Barley RTD
Exon Structure of BART1_0-u26461.008
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr4H | 1 | 13553293 | 13552714 | - |
| chr4H | 2 | 13554330 | 13554251 | - |
| chr4H | 3 | 13554582 | 13554412 | - |
| chr4H | 4 | 13555708 | 13555595 | - |
| chr4H | 5 | 13556062 | 13555928 | - |
| chr4H | 6 | 13556270 | 13556187 | - |
| chr4H | 7 | 13557718 | 13557579 | - |
| chr4H | 8 | 13559790 | 13559662 | - |
| chr4H | 9 | 13560835 | 13560539 | - |
| chr4H | 10 | 13561000 | 13560935 | - |
| chr4H | 11 | 13561248 | 13561081 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 0 | 0 | 0.00487668 |
| morex | ETI | 0 | 0 | 0 |
| morex | LEA | 0 | 0 | 0 |
| morex | EPI | 0 | 0.0629147 | 0 |
| morex | ROO | 0.22533 | 0 | 0.000000169056 |
| morex | ROO2 | 0.00000000225987 | 0.000000000579155 | 0 |
| morex | NOD | 0 | 0 | 0 |
| morex | RAC | 1.2463 | 0 | 0.252327 |
| morex | INF1 | 0 | 0 | 0 |
| morex | INF2 | 0.1928 | 1.13757 | 0 |
| morex | CAR5 | 0 | 0 | 0 |
| morex | CAR15 | 0 | 0 | 0 |
| morex | LEM | 0 | 0 | 0 |
| morex | LOD | 0 | 0.593343 | 0 |
| morex | PAL | 0.411008 | 0 | 0 |
| morex | SEN | 0 | 0 | 0 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os03g42350.1 | +3 | 2e-98 | 308 | 197/434 (45%) | protein|ankyrin, putative, expressed |
| TAIR PP10 | None | - | - | - | - | - |
| BRACH PP3 | Bradi2g23634.1.p | +3 | 3e-111 | 340 | 217/435 (50%) | pacid=32774779 transcript=Bradi2g23634.1 locus=Bradi2g23634 ID=Bradi2g23634.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (1964 bp)
>BART1_0-u26461.008 1964 150831_barley_pseudomolecules CTCGCCCATTTTCACTTGTCCTCGCGCTCGCGCGTACGCCTCGCTTTAGTTTCGTCTTCC TCGCTGCTCTTTTCTCCATTCAAAGCTCCAAGCCCCTTCTCCACCCCCACCCTAGCACAT CCTCCTCGACCGACGCCATGGTGTCGCCCTACCGAGCTCATTCCGAAGTCCACGACCCGA TGCTGGACATGGTCTTCCAGGCGGCATCCGACAACGACCTCCCCCGCTTAAAGTCGCTGG TCGTGATGCTGGACTTGGGCAGGGGCCGCCCCAAGAAGGTGATTGAGGACTTGAGGGTGG AAGACGATCCCAAGCTTGAAGGTTTCAGCGCGCTGCACATCGCGGCCAGGGGGAGCCTGG AGGTGTGCAGGTACCTCGTCGAGGAGCTGCTGGTGGATGTGGATCTGGTCGACAAGGAAG GTCCAACTATCTTCAAAACCCTAATCTTTCGGTGCAGGCTTCGTCGAATTGCATGGAGTG CCTATTTTACATGCTGGAATTTGTTGTTCGCTAGGGCTGCTTCATCTGTAGGTAGAACAC CTCTGTTTTTTGCAACATACTGCAATGGGGGTACTGCTGAGTATCTTCTTGATCATGGAG CTAATCCAGACAAAGCCGATAACAATGGGGGTTTCCTGTTACATTATGCTGCTGAAATAG GTAGTTGTGAAATGGTAGAGCTTTTGCTTGCAAAAGGAGCTTACGTTGACCCGGTATGTG CTCGTGGAACACCACTTCATATTGCTGCTGGTGGAGGGCAGTATGGTGCTATGAAGATTT TATTGGACCACAGTGCAGATTACAACAAGATGGTAGATGGTGTGACACCTCTTATGGCTG CTAAAGATGCCAACTCAACGGAATGTATCAAGCTCCTAGTTAAGCTGTGGCATCCTGCAA TTTGTGACCCCTTGTACCGGACACTTCCACAACCATTTAAAAAAAAACTTGTCGCATATT GAGGCTGGGGAGGACTTCTGCATATGTGCCATGTTGATATTAATAGTTACCTCAACATGG TTCAGAAGGAGCCTATGCTTAAACGAGAAATCACGGCATCAGAGCTTATATCACTAGGGA GTATCTCTTTAAAGAAAAAAGATTATGTTGTCGCAGCAAAATTGTACAGTCAGGCAATGC AGCTTGATCCTGGTGATGCAGTCTTGCTCTCAGACAGGAGCCTTTGTTGGCTTCACATGG GATATGGAAGAAAGGCTTTGCTAGATGCTAATCAATGCAGAAAAATGCGGCCTCTCTGGC CAAAAGCTTGTCGCCGGCAGGGTGAAGCTCTGATGCTACTGAAGGACTATGAGGGTGCAA GTGAACGGTTCTTGGATGGACTCAAATTGGACCCAGTGGACACTGCTATCGAGGATGCAT TACGGGAAGCTATGAAGTCCTTGATGACGTCTCGGAGCACGAAAGCCAATTGACTATTTG CGTGTCGCAGGGAAATCAGCTGAAGACTTGAAACGGGTCAGGAGTTTCTCCATTTTGCGC AAAGACCGATTTCCTTTAGAAAGTAAAGCGACGTGTCTCATGGCCTGATGAGAGTGTATT ACCGTCGGCATGTTTTGTATGAGCATGACTGTTGATGCTTGCAGTAGTACCCCGCGGAAA CTCGTCAGTTGCCATCTATCTGTCGTGTATTACAGGCTCTTATGTCAGGTATTTGGGTCT TCTGAAGCTCACTCGTCTGCCGCTCCTGGTGCAGCGTCCCCGAATGATCGCAGCCTCTGC ATTTGTCTTGTTGCGGTTTTGCTGAATTGCCTCCTGGCTCTGTAGTGTTTTAACTACTCA ACGATGGTACAATGTAGTGAAGATGGAGATATCTTGTGTAGGTTTTCTTCGTCCTGTGGG TGCATAATTAGAGGAGCGTGATGTAGGCTAAGTTTTGGTAGCTGCTATCCCGTCTTGTTT TCCTGACTTCAGCTGGTTGCTGTGTGGGCTCAATGGCATNNNNN
Protein Sequence (274 aa)
>BART1_0-u26461.008 274 150831_barley_pseudomolecules MVSPYRAHSEVHDPMLDMVFQAASDNDLPRLKSLVVMLDLGRGRPKKVIEDLRVEDDPKL EGFSALHIAARGSLEVCRYLVEELLVDVDLVDKEGPTIFKTLIFRCRLRRIAWSAYFTCW NLLFARAASSVGRTPLFFATYCNGGTAEYLLDHGANPDKADNNGGFLLHYAAEIGSCEMV ELLLAKGAYVDPVCARGTPLHIAAGGGQYGAMKILLDHSADYNKMVDGVTPLMAAKDANS TECIKLLVKLWHPAICDPLYRTLPQPFKKKLVAY