- Transcript BART1_0-u26461.003
- Transcript IDBART1_0-u26461.003
- Gene IDBART1_0-u26461
Barley RTD
Exon Structure of BART1_0-u26461.003
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr4H | 1 | 13553293 | 13552712 | - |
| chr4H | 2 | 13554330 | 13554251 | - |
| chr4H | 3 | 13554582 | 13554412 | - |
| chr4H | 4 | 13555708 | 13555595 | - |
| chr4H | 5 | 13556062 | 13555928 | - |
| chr4H | 6 | 13556270 | 13556187 | - |
| chr4H | 7 | 13557714 | 13557579 | - |
| chr4H | 8 | 13559790 | 13559662 | - |
| chr4H | 9 | 13560835 | 13560650 | - |
| chr4H | 10 | 13561000 | 13560935 | - |
| chr4H | 11 | 13561754 | 13561081 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 0 | 0 | 0.786103 |
| morex | ETI | 0 | 0.0449229 | 0 |
| morex | LEA | 0 | 0 | 0 |
| morex | EPI | 0 | 0.0000000167577 | 0 |
| morex | ROO | 0 | 0 | 0.156477 |
| morex | ROO2 | 0 | 0 | 0 |
| morex | NOD | 0 | 0.0180661 | 0.0231086 |
| morex | RAC | 0 | 0.453266 | 0 |
| morex | INF1 | 0.000000000719269 | 0 | 0.632811 |
| morex | INF2 | 0.316808 | 0.201301 | 1.86736 |
| morex | CAR5 | 0.448002 | 0 | 0 |
| morex | CAR15 | 0 | 0 | 0 |
| morex | LEM | 0.747376 | 0 | 0 |
| morex | LOD | 0 | 0 | 0.0422822 |
| morex | PAL | 0 | 0.399895 | 0 |
| morex | SEN | 0 | 0 | 0 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os03g42350.1 | +1 | 4e-82 | 244 | 136/257 (53%) | protein|ankyrin, putative, expressed |
| TAIR PP10 | None | - | - | - | - | - |
| BRACH PP3 | Bradi2g23634.1.p | +1 | 2e-73 | 245 | 138/256 (54%) | pacid=32774779 transcript=Bradi2g23634.1 locus=Bradi2g23634 ID=Bradi2g23634.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (2357 bp)
>BART1_0-u26461.003 2357 150831_barley_pseudomolecules GTACCATCTGCCGTGGTGCGGGTGGACGCAGGCGTTTCCTCCAATAAGCTCGAGTGGCTC CCCGATTTGGAGAAGGGCCCGGTCGCCTCTATCGTTGTTCGTCGCCACCATGGGTGTGGT AAGCGAGTTTGCGATGGGTGCGATGCTGGATCCCGCTGACAGGTTTCAAGCTCATCAGCA GCGGCTGTTCTGGCGGGGCTACGGCGCCGGTTCTCAGTTCATGGCGTGGCTGTGCTGTTG CGAAGGCATTGTGGCCCGAGGTGGTTCGTCCCGGGCGACGGCAAAGATTTCATCCGCGAA GAAGCCGTAGAGGACCTGATTGCAATTTTGCTTTCCGGCCCGGGGTCCTCCTTGTAAAAG CCAGGGACTTTAATGCTATTTCCTTTTCTGCTGAGTCCTTATATGCTCTTTGTACCGTAA CTGTATCAGATATTAACGGAGCGTCTAGGCCCTTCGCGGCCTTTACAGTTAAAAAAAAAA GAAAAAAAGAAAGACGACGGCGCTCGCTCGCCCATTTTCACTTGTCCTCGCGCTCGCGCG TACGCCTCGCTTTAGTTTCGTCTTCCTCGCTGCTCTTTTCTCCATTCAAAGCTCCAAGCC CCTTCTCCACCCCCACCCTAGCACATCCTCCTCGACCGACGCCATGGTGTCGCCCTACCG AGCTCATTCCGAAGTCCACGACCCGATGCTGGACATGGTCTTCCAGGCGGCATCCGACAA CGACCTCCCCCGCTTAAAGTCGCTGGTCGTGATGCTGGACTTGGGCAGGGGCCGCCCCAA GAAGGTGATTGAGGACTTGAGGGTGGAAGACGATCCCAAGCTTGAAGGTTTCAGCGCGCT GCACATCGCGGCCAGGGGGAGCCTGGAGGTGTGCAGGTACCTCGTCGAGGAGCTGCTGGT GGATGTGGATCTGGTCGACAAGGAAGGTAGAACACCTCTGTTTTTTGCAACATACTGCAA TGGGGGTACTGCTGAGTATCTTCTTGATCATGGAGCTAATCCAGACAAAGCCGATAACAA TGGGGGTTTCCTGTTACATTATGCTGCTGAAATAGTTGTGAAATGGTAGAGCTTTTGCTT GCAAAAGGAGCTTACGTTGACCCGGTATGTGCTCGTGGAACACCACTTCATATTGCTGCT GGTGGAGGGCAGTATGGTGCTATGAAGATTTTATTGGACCACAGTGCAGATTACAACAAG ATGGTAGATGGTGTGACACCTCTTATGGCTGCTAAAGATGCCAACTCAACGGAATGTATC AAGCTCCTAGTTAAGCTGTGGCATCCTGCAATTTGTGACCCCTTGTACCGGACACTTCCA CAACCATTTAAAAAAAAACTTGTCGCATATTGAGGCTGGGGAGGACTTCTGCATATGTGC CATGTTGATATTAATAGTTACCTCAACATGGTTCAGAAGGAGCCTATGCTTAAACGAGAA ATCACGGCATCAGAGCTTATATCACTAGGGAGTATCTCTTTAAAGAAAAAAGATTATGTT GTCGCAGCAAAATTGTACAGTCAGGCAATGCAGCTTGATCCTGGTGATGCAGTCTTGCTC TCAGACAGGAGCCTTTGTTGGCTTCACATGGGATATGGAAGAAAGGCTTTGCTAGATGCT AATCAATGCAGAAAAATGCGGCCTCTCTGGCCAAAAGCTTGTCGCCGGCAGGGTGAAGCT CTGATGCTACTGAAGGACTATGAGGGTGCAAGTGAACGGTTCTTGGATGGACTCAAATTG GACCCAGTGGACACTGCTATCGAGGATGCATTACGGGAAGCTATGAAGTCCTTGATGACG TCTCGGAGCACGAAAGCCAATTGACTATTTGCGTGTCGCAGGGAAATCAGCTGAAGACTT GAAACGGGTCAGGAGTTTCTCCATTTTGCGCAAAGACCGATTTCCTTTAGAAAGTAAAGC GACGTGTCTCATGGCCTGATGAGAGTGTATTACCGTCGGCATGTTTTGTATGAGCATGAC TGTTGATGCTTGCAGTAGTACCCCGCGGAAACTCGTCAGTTGCCATCTATCTGTCGTGTA TTACAGGCTCTTATGTCAGGTATTTGGGTCTTCTGAAGCTCACTCGTCTGCCGCTCCTGG TGCAGCGTCCCCGAATGATCGCAGCCTCTGCATTTGTCTTGTTGCGGTTTTGCTGAATTG CCTCCTGGCTCTGTAGTGTTTTAACTACTCAACGATGGTACAATGTAGTGAAGATGGAGA TATCTTGTGTAGGTTTTCTTCGTCCTGTGGGTGCATAATTAGAGGAGCGTGATGTAGGCT AAGTTTTGGTAGCTGCTATCCCGTCTTGTTTTCCTGACTTCAGCTGGTTGCTGTGTGGGC TCAATGGCATNNNNNNN
Protein Sequence (149 aa)
>BART1_0-u26461.003 149 150831_barley_pseudomolecules MCHVDINSYLNMVQKEPMLKREITASELISLGSISLKKKDYVVAAKLYSQAMQLDPGDAV LLSDRSLCWLHMGYGRKALLDANQCRKMRPLWPKACRRQGEALMLLKDYEGASERFLDGL KLDPVDTAIEDALREAMKSLMTSRSTKAN