- Transcript BART1_0-u26461.002
- Transcript IDBART1_0-u26461.002
- Gene IDBART1_0-u26461
Barley RTD
Exon Structure of BART1_0-u26461.002
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr4H | 1 | 13553293 | 13552712 | - |
| chr4H | 2 | 13554330 | 13554251 | - |
| chr4H | 3 | 13554582 | 13554412 | - |
| chr4H | 4 | 13555708 | 13555595 | - |
| chr4H | 5 | 13556270 | 13556187 | - |
| chr4H | 6 | 13557718 | 13557579 | - |
| chr4H | 7 | 13559790 | 13559662 | - |
| chr4H | 8 | 13560835 | 13560650 | - |
| chr4H | 9 | 13561000 | 13560935 | - |
| chr4H | 10 | 13561819 | 13561081 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 0 | 0.857249 | 0 |
| morex | ETI | 0 | 0 | 1.66282 |
| morex | LEA | 0 | 0 | 0.0872083 |
| morex | EPI | 0 | 0 | 0 |
| morex | ROO | 0.000000261142 | 0 | 0 |
| morex | ROO2 | 0 | 0.386689 | 0.127201 |
| morex | NOD | 0 | 0 | 0.0000000305498 |
| morex | RAC | 0 | 0 | 0 |
| morex | INF1 | 0 | 0 | 0.000000069831 |
| morex | INF2 | 0 | 0 | 0 |
| morex | CAR5 | 0 | 0 | 0 |
| morex | CAR15 | 0 | 0 | 0.245326 |
| morex | LEM | 0 | 0 | 0 |
| morex | LOD | 0 | 0 | 0 |
| morex | PAL | 0 | 0 | 0 |
| morex | SEN | 0.140984 | 0 | 0 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os03g42350.1 | +1 | 6e-100 | 315 | 198/396 (50%) | protein|ankyrin, putative, expressed |
| TAIR PP10 | None | - | - | - | - | - |
| BRACH PP3 | Bradi2g23634.1.p | +1 | 5e-115 | 353 | 212/393 (54%) | pacid=32774779 transcript=Bradi2g23634.1 locus=Bradi2g23634 ID=Bradi2g23634.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (2291 bp)
>BART1_0-u26461.002 2291 150831_barley_pseudomolecules TAAAATTAGAGCAAAAGTGTTTAGAAAAGTAGATACGTTGGAGACGTATTAGTGGCGGTG GTGTGGTACCATCTGCCGTGGTGCGGGTGGACGCAGGCGTTTCCTCCAATAAGCTCGAGT GGCTCCCCGATTTGGAGAAGGGCCCGGTCGCCTCTATCGTTGTTCGTCGCCACCATGGGT GTGGTAAGCGAGTTTGCGATGGGTGCGATGCTGGATCCCGCTGACAGGTTTCAAGCTCAT CAGCAGCGGCTGTTCTGGCGGGGCTACGGCGCCGGTTCTCAGTTCATGGCGTGGCTGTGC TGTTGCGAAGGCATTGTGGCCCGAGGTGGTTCGTCCCGGGCGACGGCAAAGATTTCATCC GCGAAGAAGCCGTAGAGGACCTGATTGCAATTTTGCTTTCCGGCCCGGGGTCCTCCTTGT AAAAGCCAGGGACTTTAATGCTATTTCCTTTTCTGCTGAGTCCTTATATGCTCTTTGTAC CGTAACTGTATCAGATATTAACGGAGCGTCTAGGCCCTTCGCGGCCTTTACAGTTAAAAA AAAAAGAAAAAAAGAAAGACGACGGCGCTCGCTCGCCCATTTTCACTTGTCCTCGCGCTC GCGCGTACGCCTCGCTTTAGTTTCGTCTTCCTCGCTGCTCTTTTCTCCATTCAAAGCTCC AAGCCCCTTCTCCACCCCCACCCTAGCACATCCTCCTCGACCGACGCCATGGTGTCGCCC TACCGAGCTCATTCCGAAGTCCACGACCCGATGCTGGACATGGTCTTCCAGGCGGCATCC GACAACGACCTCCCCCGCTTAAAGTCGCTGGTCGTGATGCTGGACTTGGGCAGGGGCCGC CCCAAGAAGGTGATTGAGGACTTGAGGGTGGAAGACGATCCCAAGCTTGAAGGTTTCAGC GCGCTGCACATCGCGGCCAGGGGGAGCCTGGAGGTGTGCAGGTACCTCGTCGAGGAGCTG CTGGTGGATGTGGATCTGGTCGACAAGGAAGGTAGAACACCTCTGTTTTTTGCAACATAC TGCAATGGGGGTACTGCTGAGTATCTTCTTGATCATGGAGCTAATCCAGACAAAGCCGAT AACAATGGGGGTTTCCTGTTACATTATGCTGCTGAAATAGGTAGTTGTGAAATGGTAGAG CTTTTGCTTGCAAAAGGAGCTTACGTTGACCCGGTATGTGCTCGTGGAACACCACTTCAT ATTGCTGCTGGTGGAGGGCAGTATGGTGCTATGAAGATTTTATTGGACCACAGTGCAGAT TACAACAAGATGGTAGATGGTGTGACACCTCTTATGGCTGCTAAAGATGCCAACTCAACG GAATGTATCAAGCTCCTAGTTAAGGTTCAGAAGGAGCCTATGCTTAAACGAGAAATCACG GCATCAGAGCTTATATCACTAGGGAGTATCTCTTTAAAGAAAAAAGATTATGTTGTCGCA GCAAAATTGTACAGTCAGGCAATGCAGCTTGATCCTGGTGATGCAGTCTTGCTCTCAGAC AGGAGCCTTTGTTGGCTTCACATGGGATATGGAAGAAAGGCTTTGCTAGATGCTAATCAA TGCAGAAAAATGCGGCCTCTCTGGCCAAAAGCTTGTCGCCGGCAGGGTGAAGCTCTGATG CTACTGAAGGACTATGAGGGTGCAAGTGAACGGTTCTTGGATGGACTCAAATTGGACCCA GTGGACACTGCTATCGAGGATGCATTACGGGAAGCTATGAAGTCCTTGATGACGTCTCGG AGCACGAAAGCCAATTGACTATTTGCGTGTCGCAGGGAAATCAGCTGAAGACTTGAAACG GGTCAGGAGTTTCTCCATTTTGCGCAAAGACCGATTTCCTTTAGAAAGTAAAGCGACGTG TCTCATGGCCTGATGAGAGTGTATTACCGTCGGCATGTTTTGTATGAGCATGACTGTTGA TGCTTGCAGTAGTACCCCGCGGAAACTCGTCAGTTGCCATCTATCTGTCGTGTATTACAG GCTCTTATGTCAGGTATTTGGGTCTTCTGAAGCTCACTCGTCTGCCGCTCCTGGTGCAGC GTCCCCGAATGATCGCAGCCTCTGCATTTGTCTTGTTGCGGTTTTGCTGAATTGCCTCCT GGCTCTGTAGTGTTTTAACTACTCAACGATGGTACAATGTAGTGAAGATGGAGATATCTT GTGTAGGTTTTCTTCGTCCTGTGGGTGCATAATTAGAGGAGCGTGATGTAGGCTAAGTTT TGGTAGCTGCTATCCCGTCTTGTTTTCCTGACTTCAGCTGGTTGCTGTGTGGGCTCAATG GCATNNNNNNN
Protein Sequence (349 aa)
>BART1_0-u26461.002 349 150831_barley_pseudomolecules MVSPYRAHSEVHDPMLDMVFQAASDNDLPRLKSLVVMLDLGRGRPKKVIEDLRVEDDPKL EGFSALHIAARGSLEVCRYLVEELLVDVDLVDKEGRTPLFFATYCNGGTAEYLLDHGANP DKADNNGGFLLHYAAEIGSCEMVELLLAKGAYVDPVCARGTPLHIAAGGGQYGAMKILLD HSADYNKMVDGVTPLMAAKDANSTECIKLLVKVQKEPMLKREITASELISLGSISLKKKD YVVAAKLYSQAMQLDPGDAVLLSDRSLCWLHMGYGRKALLDANQCRKMRPLWPKACRRQG EALMLLKDYEGASERFLDGLKLDPVDTAIEDALREAMKSLMTSRSTKAN