- Transcript BART1_0-u25435.011
- Transcript IDBART1_0-u25435.011
- Gene IDBART1_0-u25435
Exon Structure of BART1_0-u25435.011
Chromosome | Exon | Start | Stop | Direction |
---|---|---|---|---|
chr3H | 1 | 681728097 | 681727661 | - |
chr3H | 2 | 681728628 | 681728591 | - |
chr3H | 3 | 681728830 | 681728758 | - |
chr3H | 4 | 681729054 | 681728926 | - |
chr3H | 5 | 681729385 | 681729308 | - |
chr3H | 6 | 681729694 | 681729472 | - |
chr3H | 7 | 681730030 | 681729865 | - |
chr3H | 8 | 681730185 | 681730105 | - |
chr3H | 9 | 681730558 | 681730271 | - |
chr3H | 10 | 681730783 | 681730695 | - |
chr3H | 11 | 681731206 | 681731096 | - |
chr3H | 12 | 681732620 | 681732395 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materialsSample | Treatment | Rep 1 | Rep 2 | Rep 3 |
---|---|---|---|---|
morex | EMB | 6.92714 | 0.0000580743 | 6.21285 |
morex | ETI | 0 | 0 | 0.453503 |
morex | LEA | 2.52143 | 1.39497 | 1.30296 |
morex | EPI | 0.966191 | 0 | 0.697222 |
morex | ROO | 4.7197 | 2.904 | 2.044 |
morex | ROO2 | 0.735863 | 0.987191 | 0.456606 |
morex | NOD | 3.3182 | 0.000000132195 | 11.2047 |
morex | RAC | 0 | 0 | 0.676043 |
morex | INF1 | 14.4297 | 3.02463 | 11.1824 |
morex | INF2 | 4.38185 | 4.70452 | 18.7477 |
morex | CAR5 | 11.1019 | 7.8838 | 20.8572 |
morex | CAR15 | 8.49249 | 6.97435 | 7.81215 |
morex | LEM | 0 | 0.0106498 | 1.64898 |
morex | LOD | 0.880103 | 0 | 0.737547 |
morex | PAL | 0 | 1.69357 | 0 |
morex | SEN | 0 | 0 | 0 |
Homology to Model Species (BLASTX to E-value < 1e-30)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|---|---|---|---|---|---|
Rice PP7 | LOC_Os01g72890.2 | +1 | 3e-33 | 133 | 77/94 (82%) | protein|transposon protein, putative, CACTA, En/Spm sub-class, expressed |
TAIR PP10 | None | - | - | - | - | - |
BRACH PP3 | Bradi2g61380.4.p | +1 | 2e-33 | 134 | 81/93 (87%) | pacid=32777636 transcript=Bradi2g61380.4 locus=Bradi2g61380 ID=Bradi2g61380.4.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (1939 bp)
>BART1_0-u25435.011 1939 150831_barley_pseudomolecules CGCGCTCCAGACCCCGCACGCCCGCCGCCGCCGCGGGGAGACGGACGACGATGGCGAAGC CCCGCCGCGGCCGCTCAGGCTCGCGGTCCTCGTCGGGCTCCTCCTCCCGCTCCGCCTCCT CGGGCTCCTCCCGCTCGCGCTCGCGCTCCCGCTCCCGCTCCCTCTCCTCCTCCTCGTCCT CGCCCGCCCGCACCCGGGGCCGCTCCCCTCCCGCCGCCAAGCGCAGTTCACCTGGAGCAA AGAAAGGGCGATCACCTTCACCCCCTCTCAAAAAAGGGTCACCATCAAGGAAAGGCCGCT CAGCATCTCCCCCACCGAAGAAAGCTTCACCTCCTAGGAAAGCATCTCCCCCTCCTCAGT CGGTTGTTCTACACGTTGATCATCTATCCAGAAATGTGAATGAGGCTCATTTGAAGGAGA TATTTGGCTAGGATTTCTCAAGTTTGAAGTTGAAGTTGTATAAGCATCGTGATGTCCTTG CGCCAGTATTCAGATTGAGATTATTGAACAGAACTATTATTGCTTTGTTCCATTTCCTGT TCATGACAGCAATTTTGAGGGATTGCAGAAAGCATTGGAACAATCATCTGTTCTCTGATT ACTATGTTACACAGTTTTGCTAAGCAAAACACATTAGTATAATGAGCTAACCGTCCTTAA TTTGCAGGAAGTTATGGCGAAGTGGTGAATGTGGAGCTATCAATGGACAAATTTGTTAAT CTCCCTCGTGGGTATGGATACATCGAGTTCAAGAAGAGGACTGATGCTGAGAAGGCTCTT CTTTACATGGATGGTGGGCAAATTGATGGAAATGTTGTCAAGCTGAAGTTCACACTGCCA CCACGCCAAAAGGCTTCTTCACCTTTAAAGCCACCTCCTCCTCCCCCCAGAAGAGATGCT CCTCAGAATGATAAAGTTGCTATTGGTGCTGAAAAGGATGCGCAGCAGCGCCCTGGGGGA TCATCTCCACGAAAGAAGCCACCTTCTCCTCCGCGAAAGAGGTCTCCTCCAAATAGAAGG GCTGAGTCACCCCGGCGTCCACCCAATCCATCTCCAAGGCGTCGTGCTGATTCTCCTATT CGTCGTCGACCAGATCTTTCCCCTGTTAGGCGTGGTGACAGAAGACCAGGATCTCCAATT AGAAGACGTTCCCCTTCACCTAGAAGGCATAGGTCACCAATGCGGAGGGGTCGTGGCAGC TTATCACCTCGCAGACGCTCCCCGGGGCCTCCTAGGCGCTCACCTGGGCCTCCCAGACGG CGGTCACCACCACCAAGGAGATTGAGGAGTCCTCCAAGAAGGCCACCACCACCACCTCCC CGTCGTCACAGTCGCTCCCCTCCTCCTCGCCGCCCTCTTCACTCCCGCTCTAGATCGATT TCTCCTCGCAGGGGGCGAGGACCACCATTGAGGCGTGGAAGGTCGGATTCATCATATTCT GCATCACCCAGTCCTCCAAGAAAGGGACCAAGAAGGGTGTCAAGGAGCCGCAGCCCTAGA AGGCCTCCCAGAGGAAGGAGCGGATCTAGCGACAGCGGGAGCAGCAGCTCTTCCCCAACC CCAAGGCGCAGGTAGAAAGAAAGAAACTCGTAACGTGTGTTGTTCCTGGCAGGTAAAAAA ACTTTCTCTTCTCTCTCGACTGTCACCATGGATTGCGTCTGCATGCATGTATCTTGCTGT GAGCTCAAGTCAAGAGGCGATCGATGTGAGGGGCGGGACGATGCGATGAGGTGCTCGGCA TGCCTCCCTGGCATTTGTACTCACAAGACAGACTGTATGATGACGACTTGTGTTGATGAT TTGCCTGTACTGGAACTATTTTTTTATAATTCTGCGGTTGTTTGTCAACTACAAATCTGG CTAGTATTATTATCCTGTTGCCACTCTTGAGAATTAATGAGTTGTTTACTAGTTGATTGA TGGATTGGCTCGTGGAGTT
Protein Sequence (290 aa)
>BART1_0-u25435.011 290 150831_barley_pseudomolecules MDKFVNLPRGYGYIEFKKRTDAEKALLYMDGGQIDGNVVKLKFTLPPRQKASSPLKPPPP PPRRDAPQNDKVAIGAEKDAQQRPGGSSPRKKPPSPPRKRSPPNRRAESPRRPPNPSPRR RADSPIRRRPDLSPVRRGDRRPGSPIRRRSPSPRRHRSPMRRGRGSLSPRRRSPGPPRRS PGPPRRRSPPPRRLRSPPRRPPPPPPRRHSRSPPPRRPLHSRSRSISPRRGRGPPLRRGR SDSSYSASPSPPRKGPRRVSRSRSPRRPPRGRSGSSDSGSSSSSPTPRRR