- Transcript BART1_0-u25435.004
- Transcript IDBART1_0-u25435.004
- Gene IDBART1_0-u25435
Barley RTD
Exon Structure of BART1_0-u25435.004
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr3H | 1 | 681728097 | 681727258 | - |
| chr3H | 2 | 681728628 | 681728591 | - |
| chr3H | 3 | 681728833 | 681728758 | - |
| chr3H | 4 | 681729054 | 681728926 | - |
| chr3H | 5 | 681729385 | 681729308 | - |
| chr3H | 6 | 681729694 | 681729472 | - |
| chr3H | 7 | 681730030 | 681729865 | - |
| chr3H | 8 | 681730185 | 681730105 | - |
| chr3H | 9 | 681730317 | 681730271 | - |
| chr3H | 10 | 681730783 | 681730695 | - |
| chr3H | 11 | 681731206 | 681731096 | - |
| chr3H | 12 | 681733477 | 681732395 | - |
| chr3H | 13 | 681734115 | 681733967 | - |
| chr3H | 14 | 681734573 | 681734396 | - |
| chr3H | 15 | 681735055 | 681734894 | - |
| chr3H | 16 | 681735974 | 681735231 | - |
| chr3H | 17 | 681737010 | 681736050 | - |
| chr3H | 18 | 681737704 | 681737606 | - |
| chr3H | 19 | 681737948 | 681737800 | - |
| chr3H | 20 | 681738516 | 681738306 | - |
| chr3H | 21 | 681738721 | 681738587 | - |
| chr3H | 22 | 681738879 | 681738807 | - |
| chr3H | 23 | 681739133 | 681738961 | - |
| chr3H | 24 | 681739944 | 681739754 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 0.457312 | 2.50466 | 0.62005 |
| morex | ETI | 1.45238 | 0.959621 | 1.10018 |
| morex | LEA | 1.91627 | 1.7109 | 1.80963 |
| morex | EPI | 0.293019 | 0.561268 | 0.605017 |
| morex | ROO | 0.404877 | 1.35299 | 0.385179 |
| morex | ROO2 | 0.491979 | 0.70537 | 0.445432 |
| morex | NOD | 0.211221 | 0.138295 | 0.644179 |
| morex | RAC | 1.17866 | 1.86393 | 1.86095 |
| morex | INF1 | 8.27661 | 9.61914 | 8.12689 |
| morex | INF2 | 16.4453 | 13.3501 | 10.4309 |
| morex | CAR5 | 3.36844 | 4.13792 | 3.35985 |
| morex | CAR15 | 1.31317 | 0.822012 | 0.722014 |
| morex | LEM | 0.954407 | 0.813861 | 1.27357 |
| morex | LOD | 1.64531 | 1.61104 | 1.37823 |
| morex | PAL | 0.374936 | 1.28661 | 0.749594 |
| morex | SEN | 1.35697 | 1.32208 | 0.965878 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os01g72880.1 | +3 | 0.0 | 642 | 323/373 (87%) | protein|DNA mismatch repair protein Mlh1, putative, expressed |
| TAIR PP10 | AT4G09140 @ ARAPORT AT4G09140.1 @ TAIR |
+3 | 2e-166 | 528 | 260/343 (76%) | Symbols: ATMLH1, MLH1 | MUTL-homologue 1 | chr4:5817107-5821035 REVERSE LENGTH=737 |
| BRACH PP3 | Bradi2g61370.2.p | +3 | 0.0 | 677 | 342/373 (92%) | pacid=32771965 transcript=Bradi2g61370.2 locus=Bradi2g61370 ID=Bradi2g61370.2.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (6186 bp)
>BART1_0-u25435.004 6186 150831_barley_pseudomolecules CCCGCATCCGGCGGCTGGAGGAGTCGGTGGTGAACCGCATCGCCGCGGGGGAGGTGATCC AGCGGCCCTCGTCGGCGGTGAAGGAACTCGTCGAGAACAGCATCGACGCCGGCTCCTCCA CCATCTCCGTCACCGTCAAGGACGGGGGCCTCAAGCTCATCCAGGTCTCGGACGACGGCC ACGGCATCCGGTGTGAGGACTTGCCAATATTGTGTGAGAGGCATACTACCTCAAAGTTGT CTGCATATGAGGATCTACAGACAATAAAGTCCATGGGGTTCAGAGGGGAGGCTTTGGCCA GTATGACTTATGTTGGCCATGTTACCGTGACAACAATAACAGAAGGCCAACTGCATGGCT ACAGAGTTTCTTATAGGGATGGAGTAATGGAGAATGACCCAAAGCCCTGTGCTGCGGTTA AAGGAACTCAAATCATGGTTGAAAATTTATTCTACAATATGGTAGCTCGTAGGAAAACAC TGCAGAACTCCAATGATGACTATCCAAAGATAGTGGACTTCATCAGTCGGTTTGCAGTCC ATCACATCAATGTGAACTTCTCTTGCAGAAAGCATGGAGCCAATAGAGCAGATGTTCACA GTGGGAGCACATCTTCAAGGCTAGATGCTATCAGGAATGTCTATGGGGCTTCGGTTGTTC GTGATCTGATGGAAATACAGGTTTCAGATGAGAATGCTGTAGATGAAATATTCAAGATGG ATGGTTTCATCTCAAATGCAAATTATGTGGCAAAGAAGACTACTATGATTCTTTTCATAA ATGATCGACTTGTAGATTGCACTTCTTTGAAAAGAGCTACTGAATTTGTGTACTCTGCAA TACTGCCTCAAGCATCGAAACCCTTCATATACATGTCCATCAATCTTCCACCAGAACACG TGGATGTCAATATACATCCAACCAAAAAGGAGGTTAGCCTCTTAAATCAAGAGCGTATTA TTGAAAAAATTAAAGATGCCATCGAGGAAAAACTGGTGAACTGTAATAACACAAGGATAT TCCAAACTCAGGCACTAAACCCTTCAGCACTTACTCAAGCTAACACACGAAAGGACATGG GTACCGAGGTCAGCACGCCTACTGGTATGTACTCCCTCCGTTCCAAAATATAAGACCTTT TAGGAATTTCACTAAGAGACTACATACGGAGCAAAATGAGTGAATCTATACTCTAAAATA TGTCTATGTACATCCGTATGTAGTTTATAGTACAATCTCTAAAAGGTCTTATATTTAGGA ACGGAGGGAGTAGCATATATCATATGCCTATTTCAAGCTAAAATGTTTCTTAAATACACT ATACTGCCACATCACATTACTTAACTGTGTATTATTGAGCTATCTAGTAAAGGGCGTGTG AAATCACCACCATCCAGTGAATAATCTTTAGTCTAATTATATCATACTGTAGGAGAAAAA TCTCAAAAGATTCCTGTGAGCCAAATTGTCAGAACAGATCCTCGCGATCCATCTGGAAGG TTGCACACCTATTGGCAAGGTCAAACTTCAAATCTTGAAAAGAAGTCTGACCTTGTTGCC GTAAGGTATGATCTTCATTAGCAAGTTGACACTTGTCACCACTTTGTGTATTTTTTATGC TCTCTTATTTGGTCATCTGTTTGTGCTCCCTGATTTTTTTTTCTGCATGCGCATCAAATT GTGCACTAAGTACCTGTTGTTTGCCTTTCCTCATCTGAGGGTTTAACGATTCATGCTGTT TACATGCTACAAGTCTAACTCTGGTTAATTTGCGAGTGCTCGACCTTTTTCTACATTGGT TGCCAATTCATAAATTCGATTTGAAGAAGGGAGTAAAGTGATTCGCTATTTTTTACTGTG GCTGATTTTTTTCTTCTGTCTGTATATGGTTTCCAAGAAATATTGTAAGATCAAGAAGGA ATCCAAAAGATGCTGGTGATTTGTCCAGTCGCCATGAGCTTGTTACAGAAATAGATTCTA ACTTACATCCTGGCCTTTTCGATATTGTTAAGAATTGCACATATGTTGGAGTTGCGGATG AAGTTTTCGCTTTGATACAACACAATACCCTCTTATACCTTGTCAATGTGGTAAATGTTA GGTAAACTCTATACAGTACATTGATGACTAGTCATACTCTTCTATGCTTTGTATCTCTTA TTTAAGCTAGATTTTTTCTTCTAACATCTGACATAGTTATTTGAAGGTAACCGATACCCC AGTTACCTGTACATATTTGCAAATGCACGCGCACACAAACAATATTGCTTGCACACACCA CCATCAAACTGCTATCCATTCACATCGCATCCAGTTGAACGCCTGCAACTGCTAAATAAT AAGCACCTCTTCCAAATATTGCATTGTTTTCTTTTCTGTACCACTCCCTCTGTTTCTAAA TATAAGTCTTTTTAAAGATTTCACTAGGGGACTACATACAGAGCAAAATGAGTGAATCTA TACTCTAATATATGTATATATACATCCGTATGTAGTTTTCTAGTGGAAATTCTAAAAAGA CTTATATTTAGGAACGAAGGGAGTATATGATATTGATGATTCAGCTTGTGATGCAGCAAA GAACTCATGTACCAACAAGCCTTGTGCCGTTTTGGGAACTTCAATGCTATAAAACTCAGT GAACCAGCTCCACTTCTGGAGTTGCTGAGAATGGCACTGAAAGATGACGAGTCAATGAGT GATGTAAATGAGAAGGAGAAACTAGAAATTGCAGAAGTGAACACTGAGATACTGAAAGAA AATGCTGAGATGATTAATGAGTACTTCTCTATTCACATTGATCAAGGTGGCAACCTGACC AGACTTCCTGTTGTACTTGATCAGTACACTCCTGATATGGATCGCCTTCCAGAGTTCATG TTGAGTCTAGGAAATGATATTACCTGGGACGTTGAGAAAGAGTGCTTCAGAACGGCAGCA GCTGCTATCGGAAACTTCTATGCGCTTCATCCTCCCATCCTTCCAAATCCATCTGGCAAA GGCATTCAGTTATACAAGAAAAATAAAGATTGCATGGGAAGTGCTGAACAGGCTGATAAC AATTTACCAAGTACAGATGAAGATGACATCGATCAAGAGCTGCTTGCGGAAGCAGAGGCA GCATGGGCTCAACGTGAGTGGACCATCCAGCACGTCTTGTTCCCGTCGATGCGACTTTTC CTCAAGCCCCCTAAGTCGATGGCAACTGATGGAACGTTTGTCCAGATTGCTTCTCTAGAC AAGCTTTACAAGATCTTCGAGAGATGCTAGCCGACAAGCGGCATGTCGAGAAGGAAGGGA AGAGCGCGACGCGACCGACGCCCTTGCCGGTTCCTTCCGGGACGTGTGTATATAATGCGG TGTCACTGTTTTTTCCCCCCTTTTTCCGATAGGGCTGTAAATATTTTTGAAGGACGAGCA AAGTTTGCTGGGCTCCAGCTCAGCCCTGGAATTGAATGGCAAATGCACGAATGATTTGGC TCTGCTACGCAATGCTGTCATTGTTGTTTCCCTCTAATGACCCCGCTGGCAGATATGTCA TGCCCTCTTACAACGATCGCCCAAAAAAAGATTTTACAAAATCAAACGCATGCCTTTTTT TCTTTTCTTTTTCTGATCCGAAGTCAAACAAATTCGAACCGGCGTCTTTCGAGATTTAAA ATCAAGCCACGTGTCCCTGCAGGTTGGCCCGGAGAGCTGCTTGCTTCCCTCTGTTCCTAA ATGTAAGATCTTTTAGAAATTTCGATATAGACTACACACGGATGTATATAGACATATTTT AAAAATACACATTCTCTCATTTTACTCCGTAGGTACGTAGTCTATATTTTGAAATCTATA AAAGGTCCTATACTCCCTCAGGAAACATAATATATGACGTTTTGACAGTACTAAAATTCT GCCTCCCTCGTCACTTCAAAAAAAATAAAAAAAATTCTGCCTCCCTTGTTGCACACGAGA GAAGACTGGACCGACACGTGTCCCTGCGGGTGGGCCCGCAGAGAAACCCCACGCCAAAGC AAGTTACCACGCCCCCGTCCTCCTTCACCCCATCCATATCCCCCCCGACCAAAACCCTAG CTCGCGCTCCAGACCCCGCACGCCCGCCGCCGCCGCGGGGAGACGGACGACGATGGCGAA GCCCCGCCGCGGCCGCTCAGGCTCGCGGTCCTCGTCGGGCTCCTCCTCCCGCTCCGCCTC CTCGGGCTCCTCCCGCTCGCGCTCGCGCTCCCGCTCCCGCTCCCTCTCCTCCTCCTCGTC CTCGCCCGCCCGCACCCGGGGCCGCTCCCCTCCCGCCGCCAAGCGCAGTTCACCTGGAGC AAAGAAAGGGCGATCACCTTCACCCCCTCTCAAAAAAGGGTCACCATCAAGGAAAGGCCG CTCAGCATCTCCCCCACCGAAGAAAGCTTCACCTCCTAGGAAAGCATCTCCCCCTCCTCA GTCGGTTGTTCTACACGTTGATCATCTATCCAGAAATGTGAATGAGGCTCATTTGAAGGA GATATTTGGAAGTTATGGCGAAGTGGTGAATGTGGAGCTATCAATGGACAAATTTGTTAA TCTCCCTCGTGGGTATGGATACATCGAGTTCAAGAAGAGGACTGATGCTGAGAAGGCTCT TCTTTACATGGATGGTGGGCAAATTGATGGAAATGTTGTCAAGCTGAAGTTCACACTGCC ACCACGCCAAAAGGCTTCTTCACCTTTAAAGCCACCTCCTCCTCCCCCCAGAAGAGATGC TCCTCAGAATGATAAAGTTGCTATTGGTGCTGAAAAGGATGCGCAGCAGCGCCCTGGGGG ATCATCTCCACGAAAGAAGCCACCTTCTCCTCCGCGAAAGAGGTCTCCTCCAAATAGAAG GGCTGAGTCACCCCGGCGTCCACCCAATCCATCTCCAAGGCGTCGTGCTGATTCTCCTAT TCGTCGTCGACCAGATCTTTCCCCTGTTAGGCGTGGTGACAGAAGACCAGGATCTCCAAT TAGAAGACGTTCCCCTTCACCTAGAAGGCATAGGTCACCAATGCGGAGGGGTCGTGGCAG CTTATCACCTCGCAGACGCTCCCCGGGGCCTCCTAGGCGCTCACCTGGGCCTCCCAGACG GCGGTCACCACCACCAAGGAGATTGAGGAGTCCTCCAAGAAGGCCACCACCACCACCTCC CCGTCGTCACAGTCGCTCCCCTCCTCCTCGCCGCCCTCTTCACTCCCGCTCTAGATCGAT TTCTCCTCGCAGCAGGGGGCGAGGACCACCATTGAGGCGTGGAAGGTCGGATTCATCATA TTCTGCATCACCCAGTCCTCCAAGAAAGGGACCAAGAAGGGTGTCAAGGAGCCGCAGCCC TAGAAGGCCTCCCAGAGGAAGGAGCGGATCTAGCGACAGCGGGAGCAGCAGCTCTTCCCC AACCCCAAGGCGCAGGTAGAAAGAAAGAAACTCGTAACGTGTGTTGTTCCTGGCAGGTAA AAAAACTTTCTCTTCTCTCTCGACTGTCACCATGGATTGCGTCTGCATGCATGTATCTTG CTGTGAGCTCAAGTCAAGAGGCGATCGATGTGAGGGGCGGGACGATGCGATGAGGTGCTC GGCATGCCTCCCTGGCATTTGTACTCACAAGACAGACTGTATGATGACGACTTGTGTTGA TGATTTGCCTGTACTGGAACTATTTTTTTATAATTCTGCGGTTGTTTGTCAACTACAAAT CTGGCTAGTATTATTATCCTGTTGCCACTCTTGAGAATTAATGAGTTGTTTACTAGTTGA TTGATGGATTGGCTCGTGGAGTTGATTTTTCTTTAACTGTAGGTTTTGATTGTTTTGCAT TTTGAACGTGCTTGGATGAATGTGCGTGAACCTGTTGCTCTGGCATGTCCGTCTCTATGA GCCCTGTTTGGTTTGGTGCTGGCGTATCTGTTTTGTTAGCGTCGAGGTTGAGCAACAGTC CTTGCCCCTGGCCATAGCAATCCCGGTGTGCTGGGATGCCACTGAAATGTTTAGGGATAG ACAAAGCTGGTCATGCTGCTGACATGTCTAAGCTGCGGATATGCTCTTAGAGCCTGTTCT GCAATCCACAAGAATGACACTTTGACGACAATGATAAGATGCGCTGCGGGGTGAGCAAAG CTGACTTTTCGGTGGTGCTCTGGCCGCTCCAGGAGAGGAGCGGAGCATAGAGCTGCCGAA CAGGCT
Protein Sequence (428 aa)
>BART1_0-u25435.004 428 150831_barley_pseudomolecules MAKPRRGRSGSRSSSGSSSRSASSGSSRSRSRSRSRSLSSSSSSPARTRGRSPPAAKRSS PGAKKGRSPSPPLKKGSPSRKGRSASPPPKKASPPRKASPPPQSVVLHVDHLSRNVNEAH LKEIFGSYGEVVNVELSMDKFVNLPRGYGYIEFKKRTDAEKALLYMDGGQIDGNVVKLKF TLPPRQKASSPLKPPPPPPRRDAPQNDKVAIGAEKDAQQRPGGSSPRKKPPSPPRKRSPP NRRAESPRRPPNPSPRRRADSPIRRRPDLSPVRRGDRRPGSPIRRRSPSPRRHRSPMRRG RGSLSPRRRSPGPPRRSPGPPRRRSPPPRRLRSPPRRPPPPPPRRHSRSPPPRRPLHSRS RSISPRSRGRGPPLRRGRSDSSYSASPSPPRKGPRRVSRSRSPRRPPRGRSGSSDSGSSS SSPTPRRR