- Transcript BART1_0-u25331.011
- Transcript IDBART1_0-u25331.011
- Gene IDBART1_0-u25331
Barley RTD
Exon Structure of BART1_0-u25331.011
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr3H | 1 | 679780077 | 679779948 | + |
| chr3H | 2 | 679780262 | 679780159 | + |
| chr3H | 3 | 679780772 | 679780595 | + |
| chr3H | 4 | 679781035 | 679780884 | + |
| chr3H | 5 | 679782367 | 679781761 | + |
| chr3H | 6 | 679783932 | 679783777 | + |
| chr3H | 7 | 679784084 | 679784000 | + |
| chr3H | 8 | 679784262 | 679784187 | + |
| chr3H | 9 | 679784610 | 679784345 | + |
| chr3H | 10 | 679786251 | 679785100 | + |
| chr3H | 11 | 679786764 | 679786475 | + |
| chr3H | 12 | 679788719 | 679787992 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 0 | 0 | 0.465591 |
| morex | ETI | 0.57473 | 0 | 2.43508 |
| morex | LEA | 0.2916 | 0 | 0 |
| morex | EPI | 0.518018 | 0.0000031926 | 0.521581 |
| morex | ROO | 0 | 0 | 0.433149 |
| morex | ROO2 | 0.0644174 | 0.0255119 | 0.0307543 |
| morex | NOD | 0 | 0.0929474 | 0.000264833 |
| morex | RAC | 0.00000303822 | 1.29608 | 1.45619 |
| morex | INF1 | 0 | 0 | 0 |
| morex | INF2 | 0.000048445 | 0 | 0.000486183 |
| morex | CAR5 | 0.0135418 | 0 | 0 |
| morex | CAR15 | 0.145576 | 0 | 0 |
| morex | LEM | 0.00000280905 | 0.0503748 | 0.0000000119231 |
| morex | LOD | 0.000000000760232 | 1.03741 | 3.09128 |
| morex | PAL | 0.000000387939 | 0.00000166825 | 0.00000242822 |
| morex | SEN | 0 | 0.167125 | 0.000000491849 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os01g68810.1 | +2 | 0.0 | 802 | 403/513 (79%) | protein|expressed protein |
| TAIR PP10 | AT1G24706 @ ARAPORT AT1G24706.2 @ TAIR |
+2 | 0.0 | 648 | 319/497 (64%) | Symbols: THO2 | THO2 | chr1:8742210-8755250 FORWARD LENGTH=1823 |
| BRACH PP3 | Bradi2g58697.2.p | +2 | 0.0 | 900 | 434/453 (96%) | pacid=32780756 transcript=Bradi2g58697.2 locus=Bradi2g58697 ID=Bradi2g58697.2.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (3924 bp)
>BART1_0-u25331.011 3924 150831_barley_pseudomolecules GGAACTCATTCAGCAAATGGCAAATGTACAGTACACTGAGAACATGACTGATGAACAGGT TGATGCTATGGCAGGAAGTGAAACATTGCGGCTTCAATCTTCGCTGTTTGGATCAACACG GAACTATAAGGTCCTGAATAAGTCTACTAACAAATTGCGGGATTCTTTGCTTCCAAAAGA TGAACCTAAACTGGCAATTCCTCTACTACTGCTCGTTGCCCAGCACAGATCCAAGATTAT AATAAATGCAGATGCCACATATATCAAAATGGTTAGCGAGCAGTTTGATAGATGCCATGG AATACTACTTCAGTATGCCGAGTTTCTTTCAAGTGCTGTAACTTCATCAACCTATGTTCA GCTAGTACCTCCGCTGGAAGATCTCGTTTATAAATATCATATCGAGCCAGATATTGCTTT TCTTATATACCGCCCTGTAATGAGGCTTTTCAAAAGCGCTAATGGTGGCGAGGCCTGTTG GCCTCTGGATGACAATGAAGAAGGGGAGTCTGTATCATGTGATGAAATGATCTTGCATGG TGATTCATCTCAGAAGTTAATCATGTGGTCAGATCTTCTCAACACAATCCGAACAATTTT GCCAGCAAAAGCCTGGAACGGCCTTTCACCCGAATTGTATGCTACTTTCTGGGGTTTAAC ACTGTATGATCTTCATTTTCCAAAAGATCGTTATGATGCAGAAATCAAGAAGCTGCATGA AAATCTCAAACAACTTGAAGATAACTCAGATAACTCTAGCATTGCAATATCAAGACGTAA GAAGGATAAGGAGAGAATCCAAGATTTGCTGGACAAATTGAACAATGAATCTGACAAGCA TCAGCACCATGTTCTATCAGTGCTCCAAAGGCTAACCCGTGAAAAGGATAAATGGCTGAG TTCCAGTCCGGACGCACTGAAGATCAACATGGAATTTCTCCAGCGTTGCATATATCCACG CTGTGTTCTTAGCATGCAGGATGCTGTATATTGTGCTACATTCGTCCAGATGATGCATTC ACTTGGGACTCCATTTTTCAACACGGTGAATCATATAGATGTTTTCATCTGCAAGACACT ACAGCCAATGATCTGTTGTTGTACAGAATATGAGGCTGGCAGGCTGGGAAGGTTTCTTCA TGAGACCCTGAAGATGGCCTACCATTGGAAGGTTCATTGGAAATGGAGTGGAAGAATTAC CAAGGTGCTTAATCAATGTATGGAGTCAAAGGAATACATGGAAATCAGAAACGCCCTTAT TGTGCTCACAAAGATAACTAGTATTTTTCCTGTGATGCGAAAAAGCGGTATCAACATCGA GAAAAGGGTTGCGAAGCTAAAGGGGGATGAGAGGGAAGATCTGAAAGTACTGGCCACTGG TGTAGCTGCTGCTCTGGCCGCTCGCAAGGTAGAGTTCATGGGTGTCTGAAGAAGAGTTTG GCATGGGTCACCTTGATCTGAAGCCAGTGCTTGCAAAACCTATTGCTGGAAATCAGTATG CAGATCCCTCGACAGCAAAAGATCATAGCGTTCGTGCAAAATCTGTAGAGGGTAGGCATG AAAGGTCAGAAAATGCAATGAAGCCTGATGCTCAACATAAGAAGAATGCCTCAACTACAA ACGGGTCTGATAGTCAAATACCATCTTCCTCTGCACAAGGAAAAGGTTCAGGGATTGCAC GCGGTGCAGATGAACCTCCAAAACTTTTGTCCGATGATGGAGTTAAAGTCTTGAAGCCTA CTGCAGAACCCGAGACAAGAGCGTCACAAAAGCGTGCTGTACACAATGCTGCAAAGGTAT CTAAGCATGATGTGGTGAAGGAAGATGCAAAACCTGGGAGATCTACTAGCAGGGGTCTTA ATCAACAAGCCTCTGCTATTCCTGTTGACAAAGAAGTATTGTCTCAGGCAGCTGATGGTG TGCTGGATACTAATCCCACTAGTCCGTTGGTTGGCACAAATGGTAATGTACATCCGGCAC CACGAAAGGTATCAGCATCCTCCCAAAGATCAACAGTATTGGCTGCACATAGCGGTGGAA CAGCTAATCCCACCGGTGAAGGTGAATCTGCTGACTTGATTGATTCTACCGTGAAACAGC AAAAAAGATCTGTCGCCGTTGAAGAACAAGAGAGGACAGGTAAACGAAGGAAAGGAGAGA TTGAAGGCCGGGATGGTGACTTGGCAGAACACCATACGGACAAAGAAAAAAAATTGGACC CGCGATCAGTAGATAAATTTCGTTCTGTGGATCATGAGAGAGGTGCTAGTGAGGAACAAA ACCTAATTCGGACAGAGAAATTAAAAGAAAAGTTCGATGAGAAATATGAAAGAGATCATA GAGAAAAAGCAGATCGGTCTGAGAGGCGCCGTGGAGAAGACGTGGTTGAGAGACCAACAG ACAGATCATTGGAAAGGAGAGAGCGTTCTATTGAAAAGATGCAAGAGAGAGTTCCTGAAA AAGGAAGAGAAGACAGGAATAAGGAGGAGAGGAACAAAATTAAGCATGAACCCATAGACC GAGCACATACTATTAAGAATGAACCCATAGACCGAGCACATACTATTAAGCATGAACCCA TAGACCGAGCACATACTATTAAGCATGAACCCATAGACCGAGCACATACTTCTGACGAAC GCTTCCGAGGGCAAAGCTTGCCACCACCTCCACCTCTTCCAACTAGTTTTGTACCCCAAT CAGTCGCTGCTAACCGAAGAGATGAAGACATTGACCGAAGGGGGAGCAGCACCAGGCATA CACAGCGGTTGTCTCCCAGGCGTGATGAGAAAGAAAGGTGGCACTTGGAGGAGAATGCTC CGCTGTTGCAGGATGATGGGAAGCACAGGAGAGAGGAAGATCTCCGGGATAGAAAGCGTG AAGATAGGGATGTTTCATCAAGCAAGGTAGACGACAGGGATAGGGACAAAGGTAATACTG TGAAGGAAGATAGTGATCCTAATAGTGCATCCAAACGTCGAAAGATTAAAAGAGAACAGT CTGCTTTGGAGGCTGGGGAATACGCGCCTTCTGCTCCACAGCCTCCGAGCGTTGGACCTG GTAACTCACAGTATGAAATACGAGAGAGAGAAAGAAAGGGTGCTATTTCACAGCATCGTC CATCACATGCTGATGACCTTCCTAGGATGCATGCCAAGGATTCAACAAGCAAGACAAGTC GTAGAGAGGCTGACCAAACGCATGATAGAGAATGGGAAGAGGAGAAGAGGCCAAGAACTG AAGCAAAGAGGAAGCATCGGAAGTAGGTTCATGCGGGTGTCTTGATCATTCTCACATATC AAGGTGTTTCACTTGGCGATGTGCACCTGCGAACAAGTCGCTTTCTTGTAGGAGGAAAAT GTATCTGGCATATTTGAACCATTCAGTGTGTATGCCTCACTCCATGGTTTTAGAAAGGTT TGCTGGGGCTGAAGAGGATCCACATGATCAATCCTTCAGCAGTACTCCGTCAATGCTATC CAGATGCAAATTATTGCAAACATTGTTGATTGCAAGGAACATATGGCCTGTTATACAGGT CGTTATAAACATTTTAGCAATGTGGAATGTAAGGAAGAGTACATGGGCCATACCATTAAC TTAGACGGATTTGCTGTAAACAAGGATGAGCAGTTTTTCGCCCAGCTATTTTTTGTATTT TATTTTGTACTAAATGCAGACAGTTTTGTTGTGGGAGGCATTTGTGCTTCCTTTTTCTGC ACCGTCTAGGAGGAATAGCAGGGTGGCGGGTTGTGAGTAGGTTGTACATGTACAGTTACA ATGGTCGCATGAACCATCGTGTTCTAGATGTTAAACTGAGATGGTTGCATAAACCGTCGT GTTCTAAATGTTAACTGAGATGGTTGCATGAACTGTTGTGTTCCACTTCCTCCGTTCTTA AATACAAGTCCTTTTAGATATTTT
Protein Sequence (607 aa)
>BART1_0-u25331.011 607 150831_barley_pseudomolecules MGHLDLKPVLAKPIAGNQYADPSTAKDHSVRAKSVEGRHERSENAMKPDAQHKKNASTTN GSDSQIPSSSAQGKGSGIARGADEPPKLLSDDGVKVLKPTAEPETRASQKRAVHNAAKVS KHDVVKEDAKPGRSTSRGLNQQASAIPVDKEVLSQAADGVLDTNPTSPLVGTNGNVHPAP RKVSASSQRSTVLAAHSGGTANPTGEGESADLIDSTVKQQKRSVAVEEQERTGKRRKGEI EGRDGDLAEHHTDKEKKLDPRSVDKFRSVDHERGASEEQNLIRTEKLKEKFDEKYERDHR EKADRSERRRGEDVVERPTDRSLERRERSIEKMQERVPEKGREDRNKEERNKIKHEPIDR AHTIKNEPIDRAHTIKHEPIDRAHTIKHEPIDRAHTSDERFRGQSLPPPPPLPTSFVPQS VAANRRDEDIDRRGSSTRHTQRLSPRRDEKERWHLEENAPLLQDDGKHRREEDLRDRKRE DRDVSSSKVDDRDRDKGNTVKEDSDPNSASKRRKIKREQSALEAGEYAPSAPQPPSVGPG NSQYEIRERERKGAISQHRPSHADDLPRMHAKDSTSKTSRREADQTHDREWEEEKRPRTE AKRKHRK