- Gene BART1_0-u25331
- Gene IDBART1_0-u25331
- Location chr3H: 679778927 - 679788763
Barley RTD
Matching HORVU genes
BarleyRTD transcripts were compared to the location of the IBSC 2017 Predicted Transcripts. Overlapping status is classified as Containing (HORVU is smaller than the BART), Contained (BART is smaller than the HORVU), Partial-Overlap (Overlap exists), and Undefined (the BART transcript has no overlapping HORVU).| HORVU ID | Percentage overlap | BART Gene Direction | HORVU Gene Direction | Overlap Length | Gene Length Difference | Overlapping Status |
|---|---|---|---|---|---|---|
| HORVU3Hr1G110040 | 1.6 | + | + | 158 | -9554 | Partial-Overlap |
| HORVU3Hr1G109960 | 99.4 | + | + | 9777 | 119208 | Partial-Overlap |
Transcripts from Gene BART1_0-u25331
| Transcript | Length(bp) | Description |
|---|---|---|
| BART1_0-u25331.001 | 5012 | 5012 bp MSTRG.25331.1 MSTRG.25331 |
| BART1_0-u25331.002 | 4796 | 4796 bp MSTRG.25331.2 MSTRG.25331 |
| BART1_0-u25331.003 | 4595 | 4595 bp MSTRG.25331.3 MSTRG.25331 |
| BART1_0-u25331.004 | 4210 | 4210 bp MSTRG.25331.4 MSTRG.25331 |
| BART1_0-u25331.005 | 3404 | 3404 bp MSTRG.25331.5 MSTRG.25331 |
| BART1_0-u25331.006 | 3911 | 3911 bp MSTRG.25331.6 MSTRG.25331 |
| BART1_0-u25331.007 | 3979 | 3979 bp MSTRG.25331.7 MSTRG.25331 |
| BART1_0-u25331.008 | 4038 | 4038 bp MSTRG.25331.8 MSTRG.25331 |
| BART1_0-u25331.009 | 3872 | 3872 bp MSTRG.25331.9 MSTRG.25331 |
| BART1_0-u25331.010 | 3788 | 3788 bp MSTRG.25331.10 MSTRG.25331 |
| BART1_0-u25331.011 | 3924 | 3924 bp MSTRG.25331.11 MSTRG.25331 |
Exon Structure of BART1_0-u25331
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os01g68810.1 | +3 | 0.0 | 1618 | 898/1184 (76%) | protein|expressed protein |
| TAIR PP10 | None | - | - | - | - | - |
| BRACH PP3 | Bradi2g58697.1.p | +3 | 0.0 | 1924 | 1014/1158 (88%) | pacid=32780755 transcript=Bradi2g58697.1 locus=Bradi2g58697 ID=Bradi2g58697.1.v3.1 annot-version=v3.1 |
GO Annotation
Generated by PANNZER| GO ID | GO terms |
|---|---|
| GO:0003729 | mRNA binding |
| GO:0000347 | THO complex |
| GO:0006397 | mRNA processing |
| GO:0000346 | transcription export complex |
| GO:0051028 | mRNA transport |
| GO:0071427 | mRNA-containing ribonucleoprotein complex export from nucleus |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons