- Transcript BART1_0-u25331.010
- Transcript IDBART1_0-u25331.010
- Gene IDBART1_0-u25331
Barley RTD
Exon Structure of BART1_0-u25331.010
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr3H | 1 | 679779870 | 679779774 | + |
| chr3H | 2 | 679780077 | 679780006 | + |
| chr3H | 3 | 679780262 | 679780159 | + |
| chr3H | 4 | 679780772 | 679780595 | + |
| chr3H | 5 | 679781035 | 679780884 | + |
| chr3H | 6 | 679782367 | 679781761 | + |
| chr3H | 7 | 679783932 | 679783777 | + |
| chr3H | 8 | 679784080 | 679784000 | + |
| chr3H | 9 | 679784262 | 679784187 | + |
| chr3H | 10 | 679784610 | 679784345 | + |
| chr3H | 11 | 679785333 | 679785100 | + |
| chr3H | 12 | 679786251 | 679785445 | + |
| chr3H | 13 | 679786764 | 679786475 | + |
| chr3H | 14 | 679788659 | 679787992 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 1.12217 | 0 | 0.0000646725 |
| morex | ETI | 1.38934 | 0.932653 | 0.00000000628782 |
| morex | LEA | 0 | 0 | 0.636128 |
| morex | EPI | 1.6393 | 1.24035 | 1.29511 |
| morex | ROO | 0 | 0.0362031 | 0.383412 |
| morex | ROO2 | 1.66579 | 2.06883 | 2.06306 |
| morex | NOD | 3.22171 | 1.5742 | 3.01344 |
| morex | RAC | 2.69492 | 1.35789 | 0.0483982 |
| morex | INF1 | 0 | 0.0355069 | 0.685936 |
| morex | INF2 | 0 | 0 | 0.00000000340014 |
| morex | CAR5 | 0 | 0 | 0 |
| morex | CAR15 | 0 | 0 | 0 |
| morex | LEM | 1.43152 | 0.00000751726 | 1.90724 |
| morex | LOD | 2.08594 | 1.4627 | 0.857804 |
| morex | PAL | 2.84444 | 1.07191 | 2.71788 |
| morex | SEN | 1.0547 | 1.14 | 1.50007 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os01g68810.1 | +2 | 0.0 | 1515 | 850/1147 (74%) | protein|expressed protein |
| TAIR PP10 | AT1G24706 @ ARAPORT AT1G24706.2 @ TAIR |
+2 | 0.0 | 787 | 496/1022 (49%) | Symbols: THO2 | THO2 | chr1:8742210-8755250 FORWARD LENGTH=1823 |
| BRACH PP3 | Bradi2g58697.4.p | +2 | 0.0 | 1744 | 927/1086 (85%) | pacid=32780758 transcript=Bradi2g58697.4 locus=Bradi2g58697 ID=Bradi2g58697.4.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (3788 bp)
>BART1_0-u25331.010 3788 150831_barley_pseudomolecules CTGCAAGAAGCATCTTTCCATGGAGCTTAAATGCCTTTTCCAATACATAGTTAATCAACT GAAGAAAGGATTGGGCACTGAGCTTGTTGTACTTGAGGTTGATGCTATGGCAGGAAGTGA AACATTGCGGCTTCAATCTTCGCTGTTTGGATCAACACGGAACTATAAGGTCCTGAATAA GTCTACTAACAAATTGCGGGATTCTTTGCTTCCAAAAGATGAACCTAAACTGGCAATTCC TCTACTACTGCTCGTTGCCCAGCACAGATCCAAGATTATAATAAATGCAGATGCCACATA TATCAAAATGGTTAGCGAGCAGTTTGATAGATGCCATGGAATACTACTTCAGTATGCCGA GTTTCTTTCAAGTGCTGTAACTTCATCAACCTATGTTCAGCTAGTACCTCCGCTGGAAGA TCTCGTTTATAAATATCATATCGAGCCAGATATTGCTTTTCTTATATACCGCCCTGTAAT GAGGCTTTTCAAAAGCGCTAATGGTGGCGAGGCCTGTTGGCCTCTGGATGACAATGAAGA AGGGGAGTCTGTATCATGTGATGAAATGATCTTGCATGGTGATTCATCTCAGAAGTTAAT CATGTGGTCAGATCTTCTCAACACAATCCGAACAATTTTGCCAGCAAAAGCCTGGAACGG CCTTTCACCCGAATTGTATGCTACTTTCTGGGGTTTAACACTGTATGATCTTCATTTTCC AAAAGATCGTTATGATGCAGAAATCAAGAAGCTGCATGAAAATCTCAAACAACTTGAAGA TAACTCAGATAACTCTAGCATTGCAATATCAAGACGTAAGAAGGATAAGGAGAGAATCCA AGATTTGCTGGACAAATTGAACAATGAATCTGACAAGCATCAGCACCATGTTCTATCAGT GCTCCAAAGGCTAACCCGTGAAAAGGATAAATGGCTGAGTTCCAGTCCGGACGCACTGAA GATCAACATGGAATTTCTCCAGCGTTGCATATATCCACGCTGTGTTCTTAGCATGCAGGA TGCTGTATATTGTGCTACATTCGTCCAGATGATGCATTCACTTGGGACTCCATTTTTCAA CACGGTGAATCATATAGATGTTTTCATCTGCAAGACACTACAGCCAATGATCTGTTGTTG TACAGAATATGAGGCTGGCAGGCTGGGAAGGTTTCTTCATGAGACCCTGAAGATGGCCTA CCATTGGAAGGTTCATTGGAAATGGAGTGGAAGAATTACCAAGGTGCTTAATCAATGTAT GGAGTCAAAGGAATACATGGAAATCAGAAACGCCCTTATTGTGCTCACAAAGATAACTAG TATTTTTCCTGTGATGCGAAAAAGCGGTATCAACATCGAGAAAAGGGTTGCGAAGCTAAA GGGGGATGAGAGGGAAGATCTGAAAGTACTGGCCACTGGTGTAGCTGCTGCTCTGGCCGC TCGCAAGAGTTCATGGGTGTCTGAAGAAGAGTTTGGCATGGGTCACCTTGATCTGAAGCC AGTGCTTGCAAAACCTATTGCTGGAAATCAGTATGCAGATCCCTCGACAGCAAAAGATCA TAGCGTTCGTGCAAAATCTGTAGAGGGTAGGCATGAAAGGTCAGAAAATGCAATGAAGCC TGATGCTCAACATAAGAAGAATGCCTCAACTACAAACGGGTCTGATAGTCAAATACCATC TTCCTCTGCACAAGGAAAAGGTTCAGGGATTGCACGCGGTGCAGATGAACCTCCAAAACT TTTGTCCGATGATGGAGTTAAAGTCTTGAAGCCTACTGCAGAACCCGAGACAAGAGCGTC ACAAAAGCGTGCTGTACACAATGCTGCAAAGGTATCTAAGCATGATGTGGTGAAGGAAGA TGCAAAACCTGGGAGATCTACTAGCAGGGGTCTTAATCAACAAGCCTCTGCTATTCCTGT TGACAAAGAAGTATTGTCTCAGGCAGCTGATGGTGTGCTGGATACTAATCCCACTAGTCC GTTGGTTGGCACAAATGGTAATGTACATCCGGCACCACGAAAGCAAAAAAGATCTGTCGC CGTTGAAGAACAAGAGAGGACAGGTAAACGAAGGAAAGGAGAGATTGAAGGCCGGGATGG TGACTTGGCAGAACACCATACGGACAAAGAAAAAAAATTGGACCCGCGATCAGTAGATAA ATTTCGTTCTGTGGATCATGAGAGAGGTGCTAGTGAGGAACAAAACCTAATTCGGACAGA GAAATTAAAAGAAAAGTTCGATGAGAAATATGAAAGAGATCATAGAGAAAAAGCAGATCG GTCTGAGAGGCGCCGTGGAGAAGACGTGGTTGAGAGACCAACAGACAGATCATTGGAAAG GAGAGAGCGTTCTATTGAAAAGATGCAAGAGAGAGTTCCTGAAAAAGGAAGAGAAGACAG GAATAAGGAGGAGAGGAACAAAATTAAGCATGAACCCATAGACCGAGCACATACTATTAA GAATGAACCCATAGACCGAGCACATACTATTAAGCATGAACCCATAGACCGAGCACATAC TATTAAGCATGAACCCATAGACCGAGCACATACTTCTGACGAACGCTTCCGAGGGCAAAG CTTGCCACCACCTCCACCTCTTCCAACTAGTTTTGTACCCCAATCAGTCGCTGCTAACCG AAGAGATGAAGACATTGACCGAAGGGGGAGCAGCACCAGGCATACACAGCGGTTGTCTCC CAGGCGTGATGAGAAAGAAAGGTGGCACTTGGAGGAGAATGCTCCGCTGTTGCAGGATGA TGGGAAGCACAGGAGAGAGGAAGATCTCCGGGATAGAAAGCGTGAAGATAGGGATGTTTC ATCAAGCAAGGTAGACGACAGGGATAGGGACAAAGGTAATACTGTGAAGGAAGATAGTGA TCCTAATAGTGCATCCAAACGTCGAAAGATTAAAAGAGAACAGTCTGCTTTGGAGGCTGG GGAATACGCGCCTTCTGCTCCACAGCCTCCGAGCGTTGGACCTGGTAACTCACAGTATGA AATACGAGAGAGAGAAAGAAAGGGTGCTATTTCACAGCATCGTCCATCACATGCTGATGA CCTTCCTAGGATGCATGCCAAGGATTCAACAAGCAAGACAAGTCGTAGAGAGGCTGACCA AACGCATGATAGAGAATGGGAAGAGGAGAAGAGGCCAAGAACTGAAGCAAAGAGGAAGCA TCGGAAGTAGGTTCATGCGGGTGTCTTGATCATTCTCACATATCAAGGTGTTTCACTTGG CGATGTGCACCTGCGAACAAGTCGCTTTCTTGTAGGAGGAAAATGTATCTGGCATATTTG AACCATTCAGTGTGTATGCCTCACTCCATGGTTTTAGAAAGGTTTGCTGGGGCTGAAGAG GATCCACATGATCAATCCTTCAGCAGTACTCCGTCAATGCTATCCAGATGCAAATTATTG CAAACATTGTTGATTGCAAGGAACATATGGCCTGTTATACAGGTCGTTATAAACATTTTA GCAATGTGGAATGTAAGGAAGAGTACATGGGCCATACCATTAACTTAGACGGATTTGCTG TAAACAAGGATGAGCAGTTTTTCGCCCAGCTATTTTTTGTATTTTATTTTGTACTAAATG CAGACAGTTTTGTTGTGGGAGGCATTTGTGCTTCCTTTTTCTGCACCGTCTAGGAGGAAT AGCAGGGTGGCGGGTTGTGAGTAGGTTGTACATGTACAGTTACAATGGTCGCATGAACCA TCGTGTTCTAGATGTTAAACTGAGATGGTTGCATAAACCGTCGTGTTCTAAATGTTAACT GAGATGGT
Protein Sequence (1062 aa)
>BART1_0-u25331.010 1062 150831_barley_pseudomolecules CKKHLSMELKCLFQYIVNQLKKGLGTELVVLEVDAMAGSETLRLQSSLFGSTRNYKVLNK STNKLRDSLLPKDEPKLAIPLLLLVAQHRSKIIINADATYIKMVSEQFDRCHGILLQYAE FLSSAVTSSTYVQLVPPLEDLVYKYHIEPDIAFLIYRPVMRLFKSANGGEACWPLDDNEE GESVSCDEMILHGDSSQKLIMWSDLLNTIRTILPAKAWNGLSPELYATFWGLTLYDLHFP KDRYDAEIKKLHENLKQLEDNSDNSSIAISRRKKDKERIQDLLDKLNNESDKHQHHVLSV LQRLTREKDKWLSSSPDALKINMEFLQRCIYPRCVLSMQDAVYCATFVQMMHSLGTPFFN TVNHIDVFICKTLQPMICCCTEYEAGRLGRFLHETLKMAYHWKVHWKWSGRITKVLNQCM ESKEYMEIRNALIVLTKITSIFPVMRKSGINIEKRVAKLKGDEREDLKVLATGVAAALAA RKSSWVSEEEFGMGHLDLKPVLAKPIAGNQYADPSTAKDHSVRAKSVEGRHERSENAMKP DAQHKKNASTTNGSDSQIPSSSAQGKGSGIARGADEPPKLLSDDGVKVLKPTAEPETRAS QKRAVHNAAKVSKHDVVKEDAKPGRSTSRGLNQQASAIPVDKEVLSQAADGVLDTNPTSP LVGTNGNVHPAPRKQKRSVAVEEQERTGKRRKGEIEGRDGDLAEHHTDKEKKLDPRSVDK FRSVDHERGASEEQNLIRTEKLKEKFDEKYERDHREKADRSERRRGEDVVERPTDRSLER RERSIEKMQERVPEKGREDRNKEERNKIKHEPIDRAHTIKNEPIDRAHTIKHEPIDRAHT IKHEPIDRAHTSDERFRGQSLPPPPPLPTSFVPQSVAANRRDEDIDRRGSSTRHTQRLSP RRDEKERWHLEENAPLLQDDGKHRREEDLRDRKREDRDVSSSKVDDRDRDKGNTVKEDSD PNSASKRRKIKREQSALEAGEYAPSAPQPPSVGPGNSQYEIRERERKGAISQHRPSHADD LPRMHAKDSTSKTSRREADQTHDREWEEEKRPRTEAKRKHRK